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1.
Nature ; 607(7918): 313-320, 2022 07.
Article in English | MEDLINE | ID: mdl-35768506

ABSTRACT

The grey wolf (Canis lupus) was the first species to give rise to a domestic population, and they remained widespread throughout the last Ice Age when many other large mammal species went extinct. Little is known, however, about the history and possible extinction of past wolf populations or when and where the wolf progenitors of the present-day dog lineage (Canis familiaris) lived1-8. Here we analysed 72 ancient wolf genomes spanning the last 100,000 years from Europe, Siberia and North America. We found that wolf populations were highly connected throughout the Late Pleistocene, with levels of differentiation an order of magnitude lower than they are today. This population connectivity allowed us to detect natural selection across the time series, including rapid fixation of mutations in the gene IFT88 40,000-30,000 years ago. We show that dogs are overall more closely related to ancient wolves from eastern Eurasia than to those from western Eurasia, suggesting a domestication process in the east. However, we also found that dogs in the Near East and Africa derive up to half of their ancestry from a distinct population related to modern southwest Eurasian wolves, reflecting either an independent domestication process or admixture from local wolves. None of the analysed ancient wolf genomes is a direct match for either of these dog ancestries, meaning that the exact progenitor populations remain to be located.


Subject(s)
Dogs , Genome , Genomics , Phylogeny , Wolves , Africa , Animals , DNA, Ancient/analysis , Dogs/genetics , Domestication , Europe , Genome/genetics , History, Ancient , Middle East , Mutation , North America , Selection, Genetic , Siberia , Tumor Suppressor Proteins/genetics , Wolves/classification , Wolves/genetics
2.
Rapid Commun Mass Spectrom ; 24(21): 3146-50, 2010 Nov 15.
Article in English | MEDLINE | ID: mdl-20941761

ABSTRACT

The extinct woolly rhinoceros Coelodonta antiquitatis is a prominent member of the Mammuthus-Coelodonta faunal complex, but its biology is poorly known, partly because very few specimens with well-preserved soft tissues have been discovered to date. However, the permafrost-preserved horns of the woolly rhinoceros are recording structures which contain isotopic records of the diet, environmental conditions and physiological status of the animal during most of its life. In this study we report the first data on the pattern of carbon ((13)C/(12)C) and nitrogen ((15)N/(14)N) isotopic composition along the nasal horn of woolly rhinoceros. We found systematic variations in δ(13)C and δ(15)N values associated with morphologically expressed transverse banding of the horn. The comparative analysis of isotopic variation in keratinous tissues of extant and extinct herbivores suggests that the oscillation in isotopic composition of the horn was induced by seasonal changes in the diet. Although the compiled evidence is in part contradictory, we suggest that more positive δ(13)C and δ(15)N values associated with dark-colored and less dense zones of the horn indicate a summer diet. More dense and light-colored zones of the horn have lower δ(13)C and δ(15)N values possibly indicating a larger proportion of woody and shrub vegetation in the winter diet. The validity of these conclusions has to be proven in further investigations, but our data underline the potential of isotopic analysis for studies on diet and habitat use by extinct members of Pleistocene fauna.


Subject(s)
Carbon Isotopes/analysis , Fossils , Horns/chemistry , Nitrogen Isotopes/analysis , Perissodactyla/metabolism , Animals , Diet , Mass Spectrometry , Reproducibility of Results , Russia , Seasons
3.
Comput Methods Biomech Biomed Engin ; 19(3): 297-305, 2016 Feb.
Article in English | MEDLINE | ID: mdl-25740671

ABSTRACT

The biomechanical model of human coronary arteries was modified for improving the quality of diagnosis and surgical treatment for coronary heart disease. The problem of hemodynamics in the left coronary artery with multivessel bed disease - 45% stenosis of the anterior descending branch and 75% stenosis of the circumflex branch - was particularly considered. Numerical simulation of the coronary arterial bypass of the main trunk was carried out to estimate the functional condition of the coronary arteries after restoring myocardial blood supply by surgery.


Subject(s)
Coronary Artery Bypass/methods , Coronary Artery Disease/surgery , Adult , Aged , Biomechanical Phenomena , Coronary Artery Disease/diagnosis , Hemodynamics , Humans , Middle Aged , Models, Biological
4.
J Mol Model ; 20(10): 2452, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25311722

ABSTRACT

We present a new hybrid molecular dynamics model of chitosan oligomers which is constructed specifically for studying chitosan + carbon nanostructures composites, their structure and mechanical properties. The model is derived for application within the modified molecular mechanics force field AMBER. Method of virtual sites mapping allowed to retain hexagonal rings of chitosan backbone. Mass and structural disposition of virtual atoms has been found as function of joined groups' atoms masses and coordinates. Geometrical parameters (e.g., bond length, valence angles, torsional angles and van der Waals distances) were found using semi-empirical methods. Parameters of interaction within the AMBER force field were estimated according to structural and energy characteristics of chitosan dimers and oligomers. Model has successfully passed multilevel verification based on comparison of its behaviour with atomistic chitosan within the same force field. It appeared that the model reproduces structural and energy characteristics of chitosan and its composites with carbon nanostructures. Moreover, it allows estimation of their mechanical properties. Dynamical characteristics of composite components are also well reproduced.


Subject(s)
Carbon/chemistry , Chitosan/chemistry , Molecular Dynamics Simulation , Nanocomposites , Chitosan/analogs & derivatives , Molecular Structure , Nanotechnology , Reproducibility of Results , Structure-Activity Relationship
5.
Vasc Endovascular Surg ; 43(6): 533-41, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19828588

ABSTRACT

INTRODUCTION: The hemodynamic effects of carotid artery patching are not well known. Our objective was to develop a fluid-solid finite element model of the endarterectomized and patched carotid artery. METHODS: Hyperelastic materials parameters were determined from studies of 8 cadaveric carotids. Blood flow characteristics were based on intraoperative data from a patient undergoing endarterectomy. Wall shear stress, cyclic strain and effective stress were computed as hemodynamic parameters with known association with endothelial injury, neointimal hyperplasia and atherogenesis. RESULTS: Low wall shear stress, high cyclic strain and high effective stress were identified diffusely in the carotid bulb, at the margins around the patch and in the flow divider. CONCLUSION: Endarterectomy and polytetrafluoroethylene patching produce considerable abnormalities in the hemodynamics of the repaired carotid. Advanced mechanical modeling can be used to evaluate different carotid revascularization approaches to obtain optimized biomechanical and hemodynamic results for the care of patients with carotid bifurcation disease.


Subject(s)
Carotid Arteries/surgery , Carotid Stenosis/surgery , Endarterectomy, Carotid , Finite Element Analysis , Hemodynamics , Models, Cardiovascular , Adult , Aged , Aged, 80 and over , Biomechanical Phenomena , Blood Flow Velocity , Cadaver , Carotid Arteries/diagnostic imaging , Carotid Arteries/physiopathology , Carotid Stenosis/diagnostic imaging , Carotid Stenosis/physiopathology , Elasticity , Endarterectomy, Carotid/instrumentation , Female , Humans , Male , Middle Aged , Polytetrafluoroethylene , Regional Blood Flow , Stress, Mechanical , Tomography, X-Ray Computed , Ultrasonography, Doppler, Duplex
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