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1.
Opt Express ; 27(16): 23558-23575, 2019 Aug 05.
Article in English | MEDLINE | ID: mdl-31510631

ABSTRACT

We introduce a new coherent anti-Stokes Raman scattering (CARS) suppression scheme based on measuring a non-resonant CARS loss signal by three-beam (pump-Stokes-depletion) double stimulated Raman scattering (SRS) processes, which can be potentially of use for super-resolution Raman microscopy. In the converging configuration with employing both pump-depletion and Stokes-depletion SRS processes, we obtained approximately 94% suppression of non-resonant CARS signal, which is about 1.5 times more efficient than that with the parallel configuration with pump-Stokes and pump-depletion SRS processes. Such an enhanced suppression efficiency in the converging configuration results from a simultaneous loss of photons both in the pump and Stokes beams by double SRS processes, leading to an efficient suppression of the pump-Stokes-pump CARS signal. Based on the present method, we further propose two potential applications: (1) non-resonant background-free CARS imaging and (2) label-free super-resolution Raman imaging, and carry out simple numerical simulations to show their feasibility.

2.
Nano Lett ; 16(3): 1760-7, 2016 Mar 09.
Article in English | MEDLINE | ID: mdl-26854830

ABSTRACT

We report that reduced graphene-coated gold nanoparticles (r-GO-AuNPs) are excellent visible-light-responsive photocatalysts for the photoconversion of CO2 into formic acid (HCOOH). The wavelength-dependent quantum and chemical yields of HCOOH shows a significant contribution of plasmon-induced hot electrons for CO2 photoconversion. Furthermore, the presence and reduced state of the graphene layers are critical parameters for the efficient CO2 photoconversion because of the electron mobility of graphene. With an excellent selectivity toward HCOOH (>90%), the quantum yield of HCOOH using r-GO-AuNPs is 1.52%, superior to that of Pt-coated AuNPs (quantum yield: 1.14%). This indicates that r-GO is a viable alternative to platinum metal. The excellent colloidal stability and photocatalytic stability of r-GO-AuNPs enables CO2 photoconversion under more desirable reaction conditions. These results highlight the role of reduced graphene layers as highly efficient electron acceptors and transporters to facilitate the use of hot electrons for plasmonic photocatalysts. The femtosecond transient spectroscopic analysis also shows 8.7 times higher transport efficiency of hot plasmonic electrons in r-GO-AuNPs compared with AuNPs.

3.
Phys Chem Chem Phys ; 18(7): 5192-202, 2016 Feb 21.
Article in English | MEDLINE | ID: mdl-26813691

ABSTRACT

Femtosecond vibrational spectroscopy was used to probe the rebinding kinetics of NO to microperoxidase-8 (Mp), an ideal model system for the active site of ligand-binding heme proteins, including myoglobin and hemoglobin, after the photodeligation of MpNO in glycerol/water (G/W) solutions at 294 K. The geminate rebinding (GR) of NO to Mp in viscous solutions was highly efficient and ultrafast and negligibly dependent on the solution viscosity, which was adjusted by changing the glycerol content from 65% to 90% by volume in G/W mixtures. The kinetics of the GR of NO to Mp in viscous solutions was well represented by an exponential function with a time constant of ca. 11 ps. Although the kinetic traces of the GR of NO to Mp in solutions with three different viscosities (18, 81, and 252 cP) almost overlap, they show a slight difference early in the decay process. The kinetic traces were also described by the diffusion-controlled reaction theory with a Coulomb potential. Since the ligand is deligated in a neutral form, an ionic pair of NO(-) and Mp(+) may be produced before forming the Mp-NO bond by an electron transfer from Mp to NO as the deligated NO is sufficiently near to the Fe atom of Mp. The strong reactivity between NO and ferrous heme may arise from the Coulomb interaction between the reacting pair, which is consistent with the harpooning mechanism for NO binding to heme.


Subject(s)
Nitric Oxide/chemistry , Peroxidase/chemistry , Spectrum Analysis/methods
4.
Phys Chem Chem Phys ; 18(4): 3244-9, 2016 Jan 28.
Article in English | MEDLINE | ID: mdl-26742685

ABSTRACT

The excited-state energy relaxation processes of a Zn(II)porphyrin­[26]hexaphyrin­Zn(II)porphyrin triply linked hybrid tape, FZn, have been investigated by femtosecond transient absorption spectroscopy (TA), using a directly meso­meso linked hybrid trimer, HZn, as a reference compound. FZn has a very small S1­S0 energy gap through the expansion of π-conjugation and the absorption band at 1897 nm corresponds to its lowest singlet excited-state as a consequence of enhanced transition dipole moment that lies parallel to the long molecular axis. In TA measurements, we observe an energy transfer process (0.4 ps) from the Zn(II)porphyrin moiety to the [26]hexaphyrin core in HZn. In contrast to HZn, a biexponential decay with the time constants of 0.25 and 6.5 ps was observed in the decay profile of FZn. The detailed analysis of excitation wavelength, temperature and solvent dependent TA in FZn revealed that the electronic relaxation process (0.25 ps) from S1 to S0 is faster than the vibrational relaxation processes (5.9 ps) in the excited and ground states due to a very small S1­S0 energy gap through the expansion of π-conjugation. Accordingly, we demonstrate that electronic deactivation overtakes vibrational relaxation processes in a highly conjugated FZn.

5.
Angew Chem Int Ed Engl ; 55(39): 11930-4, 2016 09 19.
Article in English | MEDLINE | ID: mdl-27510963

ABSTRACT

Aromaticity reversal in the lowest triplet state, or Baird's rule, has been postulated for the past few decades. Despite numerous theoretical works on aromaticity reversal, experimental study is still at a rudimentary stage. Herein, we investigate the aromaticity reversal in the lowest excited triplet state using a comparable set of [26]- and [28]hexaphyrins by femtosecond time-resolved infrared (IR) spectroscopy. Compared to the relatively simple IR spectra of [26]bis(rhodium) hexaphyrin (R26H), those of [28]bis(rhodium) hexaphyrin (R28H) show complex IR spectra the region for the stretching modes of conjugated rings. Whereas time-resolved IR spectra of R26H in the excited triplet state are dominated by excited state IR absorption peaks, while those of R28H largely show ground state IR bleaching peaks, reflecting the aromaticity reversal in the lowest triplet state. These contrasting IR spectral features serve as new experimental aromaticity indices for Baird's rule.

6.
Photochem Photobiol Sci ; 12(6): 1008-15, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23512239

ABSTRACT

Femtosecond mid-infrared (mid-IR) spectroscopy was used to probe geminate rebinding (GR) dynamics of photo-released nitric oxide (NO) to ferric hemoglobin (Hb(III)) in D2O solution at room temperature. Time-resolved vibrational spectra exhibit two overlapping NO bands for NO-bound Hb(III) (Hb(III)NO), a major band at 1925 cm(-1) (89%) and a minor one at 1905 cm(-1) (11%), suggesting that Hb(III)NO has at least two conformational substates. Both bands decay nonexponentially, each with a different time scale, and the decays are described by a stretched exponential function; the major band's decay is described by 0.96 exp(-t/40 ps)(0.86) + 0.04 and the minor band's decay is described by exp(-t/85 ps)(0.75). These decays arise mainly from the GR of the photo-released NO to Hb(III), indicating that the bound state's conformer influences the NO binding. In particular, the His64 residue, known to have inward conformation in the major band and outward conformation in the minor band, plays a significant role in controlling the binding of NO to Hb(III). The GR of NO to ferric Hb is slower than that to ferrous Hb, which shows fast and efficient GR due to the high reactivity of NO to the heme Fe(ii). The slower GR of NO to Hb(III) may be caused by the lower reactivity of NO to the heme Fe(iii).


Subject(s)
Heme/metabolism , Hemoglobins/metabolism , Nitric Oxide/metabolism , Deuterium Oxide/metabolism , Ferric Compounds/chemistry , Ferric Compounds/metabolism , Heme/chemistry , Hemoglobins/chemistry , Humans , Light , Models, Molecular , Protein Binding , Protein Conformation , Spectrophotometry, Infrared
7.
J Phys Chem Lett ; 12(41): 10218-10224, 2021 Oct 21.
Article in English | MEDLINE | ID: mdl-34647735

ABSTRACT

Vibrational sum-frequency generation (VSFG) spectroscopy, a surface-specific technique, was shown to be useful even for characterizing the vibrational optical activity of chiral molecules in isotropic bulk liquids. However, accurately determining the spectroscopic parameters is still challenging because of the spectral congestion of chiroptical VSFG peaks with different amplitudes and phases. Here, we show that a time-variable infrared-visible chiroptical three-wave-mixing technique can be used to determine the spectroscopic parameters of second-order vibrational response signals from chiral chemical liquids. For varying the delay time between infrared and temporally asymmetric visible laser pulses, we measure the chiral VSFG, achiral VSFG, and their interference spectra of bulk R-(+)-limonene liquid and perform a global fitting analysis for those time-variable spectra to determine their spectroscopic parameters accurately. We anticipate that this time-variable VSFG approach will be useful for developing nearly background-free chiroptical characterization techniques with enhanced spectral resolution.

8.
J Phys Chem B ; 124(39): 8640-8650, 2020 10 01.
Article in English | MEDLINE | ID: mdl-32892624

ABSTRACT

The photodissociation dynamics of CF2ICF2I in solution was investigated from 0.3 ps to 100 µs, after the excitation of CF2ICF2I with a femtosecond UV pulse. Upon excitation, one I atom is eliminated within 0.3 ps, producing a haloethyl radical having a classical structure: anti-CF2ICF2 and gauche-CF2ICF2. All the nascent gauche-CF2ICF2 radicals reacted with the dissociated I atom within the solvent cage to produce a complex, I2··C2F4, in <1 ps. The quasi-stable I2··C2F4 complex in CCl4 (CH3CN or CD3OH) further dissociated into I2 and C2F4 with a time constant of 180 ± 5 (46 ± 3) ps. Some of the anti-CF2ICF2 radicals also formed the I2··C2F4 complex with a time constant of 1.5 ± 0.3 ps, while the remaining radicals underwent secondary elimination of I atom in a few nanoseconds. The time constant for the secondary dissociation of I atom from the anti-CF2ICF2 radical was independent of the excitation wavelength, indicating that the excess energy in the nascent radical is relaxed and that the secondary dissociation proceeds thermally. The formation of the I2··C2F4 complex and the thermal dissociation of the anti-CF2ICF2 radical clearly demonstrate that even a weakly interacting solvent plays a significant role in the modification and creation of reaction.

9.
J Phys Chem B ; 113(1): 260-6, 2009 Jan 08.
Article in English | MEDLINE | ID: mdl-19072185

ABSTRACT

Rebinding dynamics of CO to carboxymethyl cytochrome c (Ccytc), a chemically modified cytochrome c to bind ligands in its ferrous form, in D(2)O solution at 283 K after photodeligation, was investigated using femtosecond vibrational spectroscopy. The stretching mode of CO bound to the protein shows four stretching bands near 1962 cm(-1). Time-resolved spectra of the bound CO revealed a slight band-position-dependent rebinding kinetics, suggesting that the geminate rebinding of CO depends on the conformation of the protein. The overall rebinding kinetics of CO to Ccytc was more than 1000 times faster than that to myoglobin (Mb), a ligand-binding protein, and is also faster than a model heme, microperoxidase-8 in viscous solvent. The efficient rebinding of CO to Ccytc was attributed to the longer retention of the dissociated CO near the active binding site by the organized protein matrix of Ccytc. The spectra of the dissociated CO reveal a fast-growing band in the picosecond time scale that is assigned to CO in D(2)O solvent. The ultrafast CO escape to bulk solution is consistent with its 3D structure showing a sizable opening in the active site. It appears that most of the dissociated CO rebinds within 1 ns, except for those that escape to the bulk solution through the opening. The CO rebinding in Ccytc indicates that the primary heme pocket in Mb, located near the active site and holding the dissociated ligand for longer than tens of nanoseconds, has a specific structure to suppress CO rebinding.


Subject(s)
Carbon Monoxide/chemistry , Cytochromes c/chemistry , Kinetics , Myoglobin/chemistry , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Time
10.
J Phys Chem B ; 113(17): 6158-63, 2009 Apr 30.
Article in English | MEDLINE | ID: mdl-19348439

ABSTRACT

We show that the equilibrium unfolding transition of horse carbonmonoxy myoglobin monitored by the stretching vibration of the CO ligand, a local environmental probe, is very sharp and, thus, quite different from those measured by global conformational reporters. In addition, the denatured protein exhibits an A(0)-like CO band. We hypothesize that this sharp transition reports penetration of water into the heme pocket of the protein. Parallel experiments on horse apomyoglobin, wherein an environment-sensitive fluorescent probe, nile red, was used, also reveals a similar putative hydration event. Given the importance of dehydration in protein folding and also the recent debate over the interpretation of probe-dependent unfolding transitions, these results have strong implications on the mechanism of protein folding.


Subject(s)
Apoproteins/chemistry , Carbon Monoxide/chemistry , Myoglobin/chemistry , Protein Folding , Water/chemistry , Animals , Horses , Ligands , Time Factors , Vibration
11.
Biophys J ; 94(11): L84-6, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18359796

ABSTRACT

Femtosecond vibrational spectroscopy was used to probe a functionally important dynamics and residual structure of myoglobin unfolded by 4 M guanidine HCl. The spectra of the dissociated CO indicated that the residual structure of unfolded myoglobin (Mb) forms a few hydrophobic cavities that could accommodate the dissociated ligand. Geminate rebinding (GR) of CO to the unfolded Mb is three-orders-of-magnitude faster and more efficient than the native Mb but similar to a model heme in a viscous solvent, suggesting that the GR of CO to heme is accelerated by the longer retention of the dissociated ligand near the Fe atom by the poorly-structured protein matrix of the unfolded Mb or viscous solvent. The inefficient GR of CO in native Mb, while dissociated CO is trapped in the primary heme pocket located near the active binding site, indicates that the tertiary structure of the pocket in native Mb plays a functionally significant role.


Subject(s)
Carbon Dioxide/chemistry , Guanidine/chemistry , Models, Chemical , Models, Molecular , Myoglobin/chemistry , Binding Sites , Computer Simulation , Kinetics , Ligands , Protein Binding , Protein Denaturation , Protein Folding
12.
J Phys Chem Lett ; 9(23): 6723-6730, 2018 Dec 06.
Article in English | MEDLINE | ID: mdl-30403871

ABSTRACT

Vibrationally resonant optically active (VOA) sum-frequency generation (SFG) is a second-order nonlinear process sensitive to the stereospecific vibrational structure of chiral molecules. We demonstrate that a femtosecond VOA SFG signal can be measured in the isotropic bulk of a chiral liquid. The chiral, achiral, and VOA SFG spectra of R- and S-limonene and their racemic mixture in the C-H stretching frequency region are characterized. In particular, it is shown that the observed circular intensity difference (CID) signal, which can provide distinguishable stereochemical vibrational information between enantiomers, arises from interference of the electric-dipole allowed antisymmetric Raman tensor-induced and Raman optical activity (ROA) tensor-induced SFG fields. Furthermore, we show that the CID and linear polarization intensity difference (LID) SFG spectra are connected to the real and imaginary parts of the effective chiral VOA SFG susceptibility, respectively. We anticipate that the present technique will be of use in transient chiroptical spectroscopy and stereochemical vibrational imaging studies.

13.
J Phys Chem B ; 119(5): 1814-22, 2015 Feb 05.
Article in English | MEDLINE | ID: mdl-25573267

ABSTRACT

Like nitric oxide (NO), nitroxyl (HNO), a reduced form of NO, plays many biologically important roles including neurological function and vascular regulation. Although HNO is unstable in aqueous solution, it is exceptionally stable on binding to ferrous myoglobin (Mb) to form MbHNO. Various experimental and theoretical investigations has been carried out to unveil the structure of the active site and binding characteristics of MbHNO that can explain its functioning mechanism and the origin of its unusual stability. However, the binding dynamics of HNO to Mb, as well as the photochemical and photophysical processes associated with binding, have not been fully established. Herein, femtosecond vibrational spectroscopy was used to probe the photoexcitation dynamics of excited MbDNO in D2O solution at 294 K with a 575 nm pulse. Time-resolved spectra were described by three vibrational bands near 1380 cm(-1), in the expected N-O stretching (νN-O) mode of MbDNO, and all three bands showed instantaneous bleach that decays on a picosecond time scale. The three bands were assigned based on isotope shifts upon (15)N substitution and ab initio calculation of the vibrational frequency on a DNO-bound model heme. These three bands likely arise from Fermi interactions between the strong νN-O mode and the weak overtone and combination modes of the N atom-related modes. The immediate appearance of the bleach in these bands and the picosecond decay of the bleach indicate that most of the photoexcited MbDNO undergoes picosecond geminate rebinding (GR) of DNO to Mb subsequent to its immediate deligation. Ultrafast and efficient GR of DNO likely arises from the bonding structure of the ligand and high reactivity between DNO and Mb.


Subject(s)
Myoglobin/chemistry , Heme/chemistry , Light , Myoglobin/metabolism , Nitric Oxide/chemistry , Nitrogen Oxides/chemistry , Spectrophotometry, Infrared , Time Factors
14.
J Phys Chem B ; 117(40): 12039-50, 2013 Oct 10.
Article in English | MEDLINE | ID: mdl-24041332

ABSTRACT

Nitrosylated ferric heme is autoreduced readily to the more stable Fe(II)-NO adduct, but it is stabilized in NO-carrier heme proteins where maintaining the Fe(III) oxidation state is crucial for efficient NO delivery. Density functional theory calculations by Lehnert and co-workers have shown that a NO-bound ferric model heme has a low-spin (LS) Fe(III)-NO(radical) state that might be critical for efficient NO transport by NO-carrier heme proteins. Recently, the elusive LS Fe(III)-NO(radical) state was observed as an electronic intermediate state during geminate rebinding (GR) of NO to ferric myoglobin (Mb(III)). Cytochrome c (Cytc), a ubiquitous heme protein, is useful for generalizing the presence of the LS Fe(III)-NO(radical) state. Photoexcitation dynamics of NO-bound ferric Cytc (Cytc(III)NO) was probed after excitation of Cytc(III)NO in D2O solution at 294 K with a 575 nm pulse using femtosecond vibrational spectroscopy. The time-resolved spectra displayed several weak absorption bands in the 1900-1800 cm(-1) range and a dominant bleach at 1917 cm(-1), the position of the absorption at equilibrium. Two absorptions, with 37 cm(-1) isotope shift of (15)NO, shifted toward higher energy and narrowed with an average time constant of 8 ps, indicating that they arose from thermally and/or vibrationally excited NO in the ground electronic state of Cytc(III)NO. Three absorption bands, showing 33 cm(-1) isotope shift of (15)NO and peaked at 1865, 1836, and 1807 cm(-1), were assigned to the deligated NO residing in the interior of the protein, to the rebound Cytc(III)NO in the LS Fe(III)-NO(radical) state, and to the vibrationally excited NO of Cytc(III)NO in the LS Fe(III)-NO(radical) state, respectively. The quantum yield for NO deligation of Cytc(III)NO by a 575 nm photon was 0.8 ± 0.1. Most of the deligated NO showed non-exponential GR, and the GR kinetics was described by exp(-(t/7 ps)(0.7)). Every rebound Cytc(III)NO formed the LS Fe(III)-NO(radical) state that relaxed into the ground state, with the relaxation kinetics described by exp(-(t/2.5 ps)(0.7)). The GR of NO to ferric Cytc was as fast as the thermal relaxation of hot heme, and the relaxation of the rebound Cytc(III)NO in the intermediate LS Fe(III)-NO(radical) state was faster than the thermal relaxation of hot heme, generating the rebound Cytc(III)NO in a thermally excited ground electronic state. For both Cytc(III)NO and Mb(III)NO, the relaxation rate of the LS Fe(III)-NO(radical) state was similar to the upper rate limit of the domed-to-planar heme transition observed in NO-rebound ferrous-heme proteins, suggesting that the change in the Fe-NO bond length is coupled to the doming motion of the heme Fe.


Subject(s)
Cytochromes c/metabolism , Ferric Compounds/chemistry , Nitric Oxide/metabolism , Cytochromes c/chemistry , Deuterium Oxide/chemistry , Kinetics , Light , Nitric Oxide/chemistry , Nitrogen Isotopes/chemistry , Quantum Theory , Spectrophotometry, Infrared , Temperature
15.
J Phys Chem B ; 117(10): 2850-63, 2013 Mar 14.
Article in English | MEDLINE | ID: mdl-23432208

ABSTRACT

Femtosecond vibrational spectroscopy was used to investigate the photoexcitation dynamics of NO-bound ferric myoglobin (Mb(III)NO) in D2O solution at 294 K after excitation with a 575 nm pulse. The stretching mode of NO in Mb(III)NO consists of a major band at 1922 cm(-1) (97.7%) and a minor band at 1902 cm(-1) (2.3%), suggesting that Mb(III)NO in room temperature solution has two conformational substates. The time-resolved spectra show small but significant new absorption features at the lower-energy side of the main band (1920-1800 cm(-1)). One new absorption feature in the region of 1920-1880 cm(-1) exhibits the (15)NO isotope shift (37 cm(-1)) the same as that of the NO band in the ground electronic state of Mb(III)NO. This absorption shifts toward higher energy and narrows with a time constant of 2.4 ps, indicating that it evolves with rapid electronic and thermal relaxation of the photoexcited Mb(III)NO without photodeligation of the NO from the heme. Absorption features assigned to proteins undergoing thermal relaxation without NO deligation add up to 14 ± 1% of the total bleach, implying that the photolysis quantum yield of Mb(III)NO with a Q-band excitation is ≤0.86 ± 0.01. The remaining absorption bands peaked near 1867, 1845, and 1815 cm(-1), each showing the (15)NO isotope shift the same as that of the free NO radical (33 cm(-1)), were assigned to the vibrational band of the photodeligated NO, the NO band of Mb(III)NO in an intermediate electronic state with low-spin Fe(III)-NO(radical) character (denoted as the R state), and the NO band of the vibrationally excited NO in the R state, respectively. A kinetics model successfully reproducing the time-dependent intensity changes of the transient bands suggests that every rebound NO forms the R state that eventually relaxes into the ground electronic state nonexponentially. Most of the photodissociated NO undergoes fast geminate recombination (GR), and the rebinding kinetics depends on the conformation of the protein. GR of NO to Mb(III) in the major conformation shows highly nonexponential kinetics described by a stretched exponential function, exp(-(t/290 ps)(0.44). The NO rebinding to Mb(III) in the minor conformation is exponential, exp(-t/1.8 ns), suggesting that the distal histidine, the interaction of which dictates the conformation of Mb(III)NO, participates in mediating the binding of NO to Mb(III). In Mb(III)NO, the elusive low-spin Fe(III)-NO(radical) state, proposed in electronic structure calculations, indeed exists at >12 kJ/mol above the ground state and takes part in the bond formation of Fe(III)-NO, suggesting that it plays a significant role in the function of NO-bound ferric protein. Time-resolved vibrational spectra with high sensitivity reveal rich photophysical and photochemical processes of photoexcited Mb(III)NO.


Subject(s)
Ferric Compounds/metabolism , Myoglobin/metabolism , Nitric Oxide/metabolism , Animals , Ferric Compounds/chemistry , Heme/chemistry , Heme/metabolism , Horses , Models, Molecular , Myoglobin/chemistry , Nitric Oxide/chemistry , Photochemical Processes , Protein Binding , Protein Conformation , Spectrophotometry, Infrared
16.
J Phys Chem B ; 117(17): 4934-44, 2013 May 02.
Article in English | MEDLINE | ID: mdl-23590118

ABSTRACT

Femtosecond vibrational spectroscopy was used to probe the rebinding dynamics of CO to cytochrome c (Cytc) in 1.8 and 7 M guanidine HCl (GdnHCl) after photodeligation of the corresponding CO-bound protein in D2O buffer (pD = 7.4) at 283 K. Geminate rebinding (GR) dynamics of CO to the folded Cytc in 1.8 M GdnHCl (nCytc) is similar to that to chemically modified cytochrome c (cCytc), suggesting that the overall conformations of nCytcCO and cCytcCO are similar. About 86% of the dissociated CO molecules were geminately rebound to nCytc nonexponentially within 1 ns. The efficient GR of CO to the folded Cytc can be attributed to the organized protein matrix near the active site of nCytc that provides an efficient trap for the diffusing CO ligand after photodissociation. Although the concentration of nCytc did not affect its GR yield of CO, GR yield of CO to the unfolded Cytc in 7 M GdnHCl (uCytc) increased from 5 to 30% as the protein concentration increased from 0.3 to 9 mM. Time-resolved spectra of the (13)CO dissociated from both 9 mM nCytc(13)CO and 9 mM uCytc(13)CO showed a growing band with a peak at 2090 cm(-1) on the picosecond time scale, which was assigned to (13)CO in D2O solvent. At 1 ns, the fraction of the CO band in the solvent was about 10% of the nascent photodeligated protein in nCytc and more than 50% in the concentrated uCytc. Whereas a small opening in the active site of nCytc is responsible for the ultrafast escape of CO to solution in the folded protein, a large fraction of the CO escape to the solvent in uCytc results from the denatured structure of the active site in the unfolded protein. The spectrum of the CO dissociated from the concentrated uCytcCO contained a band that decayed as efficiently as that for the folded protein, suggesting that some fraction of uCytcCO might form aggregates even in 7 M denaturant, such that the aggregate acts as an efficient trap for the diffusing CO after deligation. No hint of precipitate in the concentrated uCytcCO and protein refolding upon dilution of the GdnHCl indicate that the aggregate does not grow continuously but remains as a soluble oligomer. The delayed appearance of the solvated CO and the inefficient GR of CO in uCytcCO suggest that the monomeric unfolded CytcCO so loosely arranged that the protein matrix cannot trap CO efficiently but the bound CO is still buried within hydrophobic residues even under the harsh denaturation condition.


Subject(s)
Carbon Monoxide/chemistry , Cytochromes c/chemistry , Guanidine/chemistry , Carbon Isotopes/chemistry , Cytochromes c/metabolism , Deuterium Oxide/chemistry , Protein Binding , Protein Denaturation , Spectroscopy, Fourier Transform Infrared , Time Factors
17.
J Phys Chem B ; 116(22): 6346-55, 2012 Jun 07.
Article in English | MEDLINE | ID: mdl-22587393

ABSTRACT

The dynamics of NO rebinding in hemoglobin (Hb) was directly observed using femtosecond mid-IR spectroscopy after photodeligation of NO from HbNO in D(2)O at 283 K. Time-resolved spectra of bound NO appeared to have a single feature peaked at 1616 cm(-1) but were much better described by two Gaussians with equal intensities but different rebinding kinetics, where the feature at 1617 cm(-1) rebinds faster than the one at 1614 cm(-1). It is possible that the two bands each correspond to one of two subunit constituents of the tetrameric Hb. Transient absorption spectra of photodeligated NO revealed three evolving bands near 1858 cm(-1) and their red-shifted replicas. The red-shifted replicas arise from photodeligated NO in the vibrationally excited v = 1 state. More than 10% of the NO was dissociated into the vibrationally excited v = 1 state when photolyzed by a 580 nm pulse. The three absorption bands for the deligated NO could be attributed to three NO sites in or near the heme pocket. The kinetics of the three transient bands for the deligated NO, as well as the recovery of the bound NO population, was most consistent with a kinetics scheme that incorporates time-dependent rebinding from one site that rapidly equilibrates with the other two sites. The time dependence results from a time-dependent rebinding barrier due to conformational relaxation of protein after deligation. By assigning each absorption band to a site in the heme pocket of Hb, a pathway for rebinding of NO to Hb was proposed.


Subject(s)
Hemoglobins/chemistry , Nitric Oxide/chemistry , Binding Sites , Ligands , Models, Molecular , Molecular Dynamics Simulation , Spectrophotometry, Infrared , Time Factors
18.
J Phys Chem B ; 116(46): 13663-71, 2012 Nov 26.
Article in English | MEDLINE | ID: mdl-23113639

ABSTRACT

Using femtosecond vibrational spectroscopy, we investigated the rebinding dynamics of NO to cytochrome c (Cytc) and a model heme, microperoxidase-8 (Mp), after photodeligation of CytcNO in D(2)O solution and MpNO in an 81% glycerol/water (v/v) mixture at room temperature. Whereas the stretching mode of the NO band in MpNO was described by a Gaussian centered at 1653 cm(-1) with a full width at half-maximum (fwhm) of 41 cm(-1), that in CytcNO revealed an asymmetric structured band that peaked at 1619 cm(-1) with an fwhm of about 27 cm(-1). The structured NO band in CytcNO was well described by the sum of three Gaussians, and its shape did not evolve with time but its amplitude decayed exponentially with a time constant of 7 ± 1 ps. The transient NO band in MpNO also decayed exponentially with a time constant of 8 ± 1 ps. Rebinding of NO to Cytc was slightly faster than that of NO to Mp and was almost complete by 30 ps, which was much faster than the rebinding of NO to myoglobin (Mb). When the deligated NO was constrained near the Fe atom either by a viscous solvent or by the protein matrix, it rebound to heme Fe much faster than CO, suggesting that NO has a higher propensity for binding to heme Fe and the high reactivity governed the rebinding kinetics. Moreover, the faster ligand rebinding in Cytc than in Mb suggests that Cytc does not have a primary docking site (PDS)-like structure found in Mb that suppresses rebinding by restraining ligand motion and the PDS can also hold the deligated NO in a manner that impedes NO rebinding; however, due to higher NO reactivity with heme Fe, the impediment is not as efficient as for CO.


Subject(s)
Cytochromes c/chemistry , Nitric Oxide/chemistry , Water/chemistry , Cytochromes c/metabolism , Nitric Oxide/metabolism , Spectroscopy, Near-Infrared , Vibration
19.
Br J Ophthalmol ; 95(4): 518-23, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20679080

ABSTRACT

PURPOSE: To evaluate the short-term efficacy of photodynamic therapy (PDT) for steroid-associated chronic or recurrent central serous chorioretinopathy (CSC). DESIGN: Interventional case series. METHODS: Retrospective review of nine consecutive cases of steroid-associated CSC treated with PDT using half-fluence for fovea involving treatments (n=4) and full-fluence for extrafoveal treatments (n=5). The main outcome measures included anatomical changes measured on optical coherence tomography (OCT) and changes in best-corrected visual acuity (BCVA) after PDT. RESULTS: All eyes had fovea involving serous retinal detachment on OCT, and six (67%) eyes had a history of three or more recurrences. The mean duration of current episode of CSC prior to PDT was 45 months (range: 3-131 months). The mean follow-up after PDT was 8 months (range: 3-18 months). Serous retinal detachment disappeared in all cases following PDT without any complications. One patient had a recurrence and was re-treated. Compared to the mean BCVA of 20/83 (logMAR 0.62) at baseline, the mean BCVA was 20/40 (logMAR 0.33) at 3 months (p=0.018), and 20/47 (logMAR 0.37) at last follow up (p=0.075). Visual acuity improved by at least two lines in three (33%) eyes. CONCLUSIONS: Despite chronicity and recurrences seen in steroid-associated CSC, serous retinal detachment resolved in all cases, and a modest improvement in visual acuity was observed following PDT, at least for the short term. Given the difficulty of managing these cases, PDT as applied in this study may be an effective treatment.


Subject(s)
Central Serous Chorioretinopathy/drug therapy , Photochemotherapy/methods , Photosensitizing Agents/administration & dosage , Porphyrins/administration & dosage , Adult , Aged , Central Serous Chorioretinopathy/chemically induced , Drug Administration Schedule , Female , Fluorescein Angiography , Humans , Male , Middle Aged , Retrospective Studies , Tomography, Optical Coherence , Treatment Outcome , Verteporfin , Visual Acuity
20.
J Phys Chem B ; 114(33): 10897-904, 2010 Aug 26.
Article in English | MEDLINE | ID: mdl-20684499

ABSTRACT

Rebinding kinetics of CO to microperoxidase-8 (Mp), an excellent model system for the active site of heme proteins such as myoglobin and hemoglobin, was measured after photolysis of MpCO in solutions with various viscosities and temperatures, using femtosecond vibrational spectroscopy. Whereas the geminate rebinding of CO to Mp in water is negligible, significant fractions of CO rebind nonexponentially within 1 ns at room temperature in a glycerol/water solution. The geminate yield of the CO rebinding increases and its rate accelerates as the viscosity of the solution increases either by increasing glycerol content in glycerol/water mixtures at 294 K or by decreasing temperature of the solution from 323 to 283 K. The nonexponential rebinding kinetics can be described by the theory of a diffusion-controlled reaction and the data are well reproduced by the pair survival probability function in the absence of any interaction potential between the pair. The rebinding kinetics was also successfully described by the SRC model, a distributed linear coupling model for the CO rebinding.


Subject(s)
Carbon Monoxide/metabolism , Glycerol/chemistry , Peroxidases/metabolism , Water/chemistry , Animals , Catalytic Domain , Heme/metabolism , Kinetics , Models, Molecular , Peroxidases/chemistry , Protein Binding , Solutions , Temperature , Viscosity
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