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Cancer Invest ; 42(5): 390-399, 2024 May.
Article in English | MEDLINE | ID: mdl-38773925

ABSTRACT

Evaluation of the test performance of the Target enhanced whole-genome sequencing (TE-WGS) assay for comprehensive oncology genomic profiling. The analytical validation of the assay included sensitivity and specificity for single nucleotide variants (SNVs), insertions/deletions (indels), and structural variants (SVs), revealing a revealed a sensitivity of 99.8% for SNVs and 99.2% for indels. The positive predictive value (PPV) was 99.3% SNVs and 98.7% indels. Clinical validation was benchmarked against established orthogonal methods and demonstrated high concordance with reference methods. TE-WGS provides insights beyond targeted panels by comprehensive analysis of key biomarkers and the entire genome encompassing both germline and somatic findings.


Subject(s)
Genomics , INDEL Mutation , Whole Genome Sequencing , Humans , Whole Genome Sequencing/methods , Genomics/methods , Polymorphism, Single Nucleotide , Neoplasms/genetics , Female , Male , Genome, Human , Middle Aged , Sensitivity and Specificity , High-Throughput Nucleotide Sequencing/methods , Aged , Adult , Reproducibility of Results
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