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1.
Phys Chem Chem Phys ; 26(36): 23971-23978, 2024 Sep 18.
Article in English | MEDLINE | ID: mdl-39239967

ABSTRACT

Photoion mass-selected threshold photoelectron spectroscopy (ms-TPES) was used to identify the isoprene pyrolysis products in a SiC microreactor at 1400 °C with the help of literature and Franck-Condon simulated reference spectra for molecular species at the detected m/z ratios. The key observation is the presence of equimolar amounts of isoprene and cyclopentene at the pyrolysis temperature based on the m/z 68 ms-TPES, indicating kinetically allowed isoprene isomerization concurrently with fragmentation reactions. This isomerization was computationally explored and was found to take place via a short-lived vinylcyclopropane intermediate, which was previously proposed to isomerize into isoprene and cyclopentene, with the latter product being dominant. Cyclopentene then decomposes by loss of H2 to form m/z 66, cyclopentadiene (also observed). Previously postulated products of dimethylallene, methylallene, and allene were not observed. Of the possible C2-C4-products, the extracted ms-TPES confirmed only 1,3-butadiene and 2-butyne (m/z 54), 1-buten-3-yne (m/z 52), propene (m/z 42), propyne (m/z 40), propargyl radical (m/z 39), as well as C2H4, C2H2, CH4, and CH3. A trace amount of benzene was also observed at m/z 78, indicative of bimolecular chemistry. The results draw into question a number of the suggested unimolecular reaction products in the recent literature and thus the kinetic models for isoprene pyrolysis.

2.
Sensors (Basel) ; 24(5)2024 Feb 21.
Article in English | MEDLINE | ID: mdl-38474921

ABSTRACT

Integrated safety sensors for personal protection equipment increasingly attract research activities as there is a high need for workers in delicate situations to be physically monitored in order to avoid accidents. In this work, we present a simple approach to generate thin, homogeneous polypyrrole (PPy) layers on flexible textile polyamide fabrics. PPy layers of 0.5-1 µm were deposited on the fabric, which thus kept its flexibility. The conductive layers are multifunctional and can act as temperature and gas sensors for the detection of corrosive gases such as HCl and NH3. Using three examples of life-threatening environments, we were able to monitor temperature, atmospheric NH3 and HCl within critical ranges, i.e., 100 to 400 ppm for ammonia and 20 to 100 ppm for HCl. In the presence of HCl, a decrease in resistance was observed, while gaseous NH3 led to an increase in resistance. The sensor signal thus allows for distinguishing between these two gases and indicating critical concentrations. The simple and cheap manufacturing of such PPy sensors is of substantial interest for the future design of multifunction functional sensors in protective clothing.

3.
Environ Monit Assess ; 196(5): 437, 2024 Apr 09.
Article in English | MEDLINE | ID: mdl-38592553

ABSTRACT

Impervious surface cover increases peak flows and degrades stream health, contributing to a variety of hydrologic, water quality, and ecological symptoms, collectively known as the urban stream syndrome. Strategies to combat the urban stream syndrome often employ engineering approaches to enhance stream-floodplain reconnection, dissipate erosive forces from urban runoff, and enhance contaminant retention, but it is not always clear how effective such practices are or how to monitor for their effectiveness. In this study, we explore applications of longitudinal stream synoptic (LSS) monitoring (an approach where multiple samples are collected along stream flowpaths across both space and time) to narrow this knowledge gap. Specifically, we investigate (1) whether LSS monitoring can be used to detect changes in water chemistry along longitudinal flowpaths in response to stream-floodplain reconnection and (2) what is the scale over which restoration efforts improve stream quality. We present results for four different classes of water quality constituents (carbon, nutrients, salt ions, and metals) across five watersheds with varying degrees of stream-floodplain reconnection. Our work suggests that LSS monitoring can be used to evaluate stream restoration strategies when implemented at meter to kilometer scales. As streams flow through restoration features, concentrations of nutrients, salts, and metals significantly decline (p < 0.05) or remain unchanged. This same pattern is not evident in unrestored streams, where salt ion concentrations (e.g., Na+, Ca2+, K+) significantly increase with increasing impervious cover. When used in concert with statistical approaches like principal component analysis, we find that LSS monitoring reveals changes in entire chemical mixtures (e.g., salts, metals, and nutrients), not just individual water quality constituents. These chemical mixtures are locally responsive to restoration projects, but can be obscured at the watershed scale and overwhelmed during storm events.


Subject(s)
Rivers , Salts , Water Quality , Environmental Monitoring , Carbon , Sodium Chloride
4.
Molecules ; 28(11)2023 May 30.
Article in English | MEDLINE | ID: mdl-37298907

ABSTRACT

Ion-molecule reactions between the neutral ethyl- (EF), isopropyl- (IF), t-butyl- (TF) and phenyl formate (PF) and proton-bound water clusters W2H+ and W3H+ (W = H2O) showed that the major reaction product is water loss from the initial encounter complex, followed ultimately by the formation of the protonated formate. Collision-induced dissociation breakdown curves of the formate-water complexes were obtained as a function of collision energy and modeled to extract relative activation energies for the observed channels. Density functional theory calculations (B3LYP/6-311+G(d,p)) of the water loss reactions were consistent with reactions having no reverse energy barrier in each case. Overall, the results indicate that the interaction of formates with atmospheric water can form stable encounter complexes that will dissociate by sequential water loss to form protonated formates.


Subject(s)
Protons , Water , Formates
5.
J Phys Chem A ; 126(48): 9051-9058, 2022 Dec 08.
Article in English | MEDLINE | ID: mdl-36442159

ABSTRACT

Guaiacol (2-methoxyphenol) and its derivatives are a class of semivolatile polar organic molecules possessing low molecular weights. Owing to their volatility, guaiacol and its derivatives can interact with atmospheric water and form protonated methoxyphenols through proton transfer. The aim of the present work is to study the dissociation of these protonated ions and hence, potentially, their atmospheric fate. Tandem mass spectrometry was employed to analyze the unimolecular dissociation of the protonated forms of guaiacol (2-methoxyphenol, 1), creosol (2-methoxy-4-methylphenol, 2), 4-ethylguaiacol (4-ethyl-2-methoxyphenol, 3), 4-vinylguaiacol (2-methoxy-4-vinylphenol, 4), eugenol (2-methoxy-4-prop-2-enylphenol, 5), and vanillin (4-hydroxy-3-methoxybenzaldehyde, 6). Density functional theory at the B3LYP/6-31G(d) (1-5) and B3LYP/6-311+G(d,p) (6) levels of theory were applied to determine the observed minimum energy reaction pathways, and reliable energetics were acquired using CBS-QB3 single-point energy calculations. All the protonated ions, with the exception of 6, exhibit the loss of CH3OH via a series of hydrogen transfers, followed by ring contraction to lose CO. This common dissociation pathway leads to the formation of a cyclopentadienyl ion as the main dissociation product. Conversely, 6 first exhibits the loss of CO, followed by sequential losses of CH3OH and CO to generate a cyclopentadienyl ion. Additionally, minor fragmentation channels are also observed for the different protonated ions: CH2 loss in 1; CH4 and H2O losses in 3; CH3 loss in 4, 5, and 6; C2H4 and CH2CHCH2 losses in 5; H loss in 6. Altogether, the protonated ions primarily lose CH3OH and CO as neutral molecules and generate a cyclopentadienyl ion as a dissociation product.

6.
Nature ; 532(7600): 496-9, 2016 Apr 28.
Article in English | MEDLINE | ID: mdl-26982721

ABSTRACT

Problematic fossils, extinct taxa of enigmatic morphology that cannot be assigned to a known major group, were once a major issue in palaeontology. A long-favoured solution to the 'problem of the problematica', particularly the 'weird wonders' of the Cambrian Burgess Shale, was to consider them representatives of extinct phyla. A combination of new evidence and modern approaches to phylogenetic analysis has now resolved the affinities of most of these forms. Perhaps the most notable exception is Tullimonstrum gregarium, popularly known as the Tully monster, a large soft-bodied organism from the late Carboniferous Mazon Creek biota (approximately 309-307 million years ago) of Illinois, USA, which was designated the official state fossil of Illinois in 1989. Its phylogenetic position has remained uncertain and it has been compared with nemerteans, polychaetes, gastropods, conodonts, and the stem arthropod Opabinia. Here we review the morphology of Tullimonstrum based on an analysis of more than 1,200 specimens. We find that the anterior proboscis ends in a buccal apparatus containing teeth, the eyes project laterally on a long rigid bar, and the elongate segmented body bears a caudal fin with dorsal and ventral lobes. We describe new evidence for a notochord, cartilaginous arcualia, gill pouches, articulations within the proboscis, and multiple tooth rows adjacent to the mouth. This combination of characters, supported by phylogenetic analysis, identifies Tullimonstrum as a vertebrate, and places it on the stem lineage to lampreys (Petromyzontida). In addition to increasing the known morphological disparity of extinct lampreys, a chordate affinity for T. gregarium resolves the nature of a soft-bodied fossil which has been debated for more than 50 years.


Subject(s)
Fossils , Phylogeny , Vertebrates/classification , Animal Fins/anatomy & histology , Animals , Extinction, Biological , Eye/anatomy & histology , Gastrointestinal Tract/anatomy & histology , Illinois , Lampreys/classification , Notochord/anatomy & histology , Tooth/anatomy & histology , Vertebrates/anatomy & histology
7.
Agric Ecosyst Environ ; 332: 1-13, 2022 Jul 01.
Article in English | MEDLINE | ID: mdl-35400773

ABSTRACT

Nitrogen (N) fertilizer applications are important for agricultural yield, yet not all the applied N is taken up by crops, leading to surplus N storage in soil or leaching to groundwater and surface water. Leaching loss of fertilizer N represents a cost for farmers and has consequences for human health and the environment, especially in the southern Willamette Valley, Oregon, USA, where groundwater nitrate contamination is prevalent. While improved nutrient management and conservation practices have been implemented to minimize leaching, nitrate levels in groundwater continue to increase in many long-term monitoring wells. To elucidate controls on leaching rates and N dynamics in agricultural soils across soil depths, and in response to seasonal and annual variation in management (e.g., fertilizer input amount and summer irrigation), we intensively monitored the transport of water and nitrate every two weeks for four years through the vadose zone at three depths (0.8, 1.5, and 3.0 m) in a sweet corn (maize) field. Though nitrate leaching was highly variable among lysimeters at the same depth and across years, a strong pattern emerged: annual nitrate leaching significantly decreased with depth across the study, averaging ~104 kg N ha-1 yr-1 near the surface (0.8 m) versus ~56 kg N ha-1 yr-1 in the deep soil (3.0 m), a 54% reduction in leaching between the soil layers. Even though crops were irrigated in summer, most leaching (~72% below 3.0 m) occurred during the wet fall and winter. Based on steady state assumptions, a net equivalent of ~29% of surface N inputs leached below 3.0 m into the deeper soil and groundwater, while ~44% was removed in crop harvest, indicating considerable N retention in the soil (~27% of inputs or approximately 58 kg N ha-1 yr-1). The accumulation and long-term dynamics of deep soil N is a legacy of agricultural management that should be further studied to better manage and reduce nitrate loss to groundwater.

8.
Urban Ecosyst ; 25(3): 879-907, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35561157

ABSTRACT

Stream restoration is a popular approach for managing nitrogen (N) in degraded, flashy urban streams. Here, we investigated the long-term effects of stream restoration involving floodplain reconnection on riparian and in-stream N transport and transformation in an urban stream in the Chesapeake Bay watershed. We examined relationships between hydrology, chemistry, and biology using a Before/After-Control/Impact (BACI) study design to determine how hydrologic flashiness, nitrate (NO3 -) concentrations (mg/L), and N flux, both NO3 - and total N (kg/yr), changed after the restoration and floodplain hydrologic reconnection to its stream channel. We examined two independent surface water and groundwater data sets (EPA and USGS) collected from 2002-2012 at our study sites in the Minebank Run watershed. Restoration was completed during 2004 and 2005. Afterward, the monthly hydrologic flashiness index, based on mean monthly discharge, decreased over time from 2002 and 2008. However, from 2008-2012 hydrologic flashiness returned to pre-restoration levels. Based on the EPA data set, NO3 - concentration in groundwater and surface water was significantly less after restoration while the control site showed no change. DOC and NO3 - were negatively related before and after restoration suggesting C limitation of N transformations. Long-term trends in surface water NO3 - concentrations based on USGS surface water data showed downward trends after restoration at both the restored and control sites, whereas specific conductance showed no trend. Comparisons of NO3 - concentrations with Cl- concentrations and specific conductance in both ground and surface waters suggested that NO3 - reduction after restoration was not due to dilution or load reductions from the watershed. Modeled NO3 - flux decreased post restoration over time but the rate of decrease was reduced likely due to failure of restoration features that facilitated N transformations. Groundwater NO3 - concentrations varied among stream features suggesting that some engineered features may be functionally better at creating optimal conditions for N retention. However, some engineered features eroded and failed post restoration thereby reducing efficacy of the stream restoration to reduce flashiness and NO3 - flux. N management via stream restoration will be most effective where flashiness can be reduced and DOC made available for denitrifiers. Stream restoration may be an important component of holistic watershed management including stormwater management and nutrient source control if stream restoration and floodplain reconnection can be done in a manner to resist the erosive effects of large storm events that can degrade streams to pre-restoration conditions. Long-term evolution of water quality functions in response to degradation of restored stream channels and floodplains from urban stressors and storms over time warrants further study, however.

9.
Urban Ecosyst ; 25(3): 773-795, 2022 Jun 01.
Article in English | MEDLINE | ID: mdl-36310660

ABSTRACT

Riparian zones are a vital interface between land and stream and are often the focus of stream restoration efforts to reduce nutrient pollution in waterways. Restoration of degraded stream channels often requires the removal of mature trees during major physical alteration of the riparian zone to reshape streambank topography. We assessed the impact of tree removal on riparian groundwater quality over space and time. Twenty-nine wells were installed across 5 sites in watersheds of the Washington D.C. and Baltimore, Maryland, USA metropolitan areas. Study sites encompassed a chronosequence of restoration ages (5, 10 and 20 years) as well as unrestored comparisons. Groundwater wells were installed as transects of 3 perpendicular to the stream channel to estimate nutrient uptake along groundwater flow paths. Groundwater samples collected over a 2-year period (2018-2019) were analyzed for concentrations of dissolved inorganic carbon (DIC), dissolved organic carbon (DOC), total dissolved nitrogen (TDN), and dissolved components of calcium (Ca), potassium (K), magnesium (Mg), sodium (Na), sulfur (S) and other elements. Results showed some interesting patterns such as: (1) elevated concentrations of some nutrients and carbon in riparian groundwater of recently restored (5 year) sites; (2) decreasing linear trends in concentrations of TDN, K and S in groundwater during a 2 year shift from wet to dry conditions; (3) linear relationships between DOC (organic matter) and plant nutrients in groundwater suggesting the importance of plant uptake and biomass as sources and sinks of nutrients; (4) increasing concentrations in groundwater along hydrologic flow paths from uplands to streams in riparian zones where trees were recently cut, and opposite patterns where trees were not cut. Riparian zones appeared to act as sources or sinks of bioreactive elements based on tree removal. Mean TDN, DOC, and S, concentrations decreased by 78.6%, 12.3%, and 19.3% respectively through uncut riparian zones, but increased by 516.9%, 199.7%, and 34.5% respectively through the 5-year cut transects. Ecosystem recovery and an improvement in groundwater quality appeared to be achieved by 10-20 years after restoration. A better understanding of the effects of riparian tree removal on groundwater quality can inform strategies for minimizing unintended effects of stream restoration on groundwater chemistry.

10.
Hum Mol Genet ; 28(3): 448-458, 2019 02 01.
Article in English | MEDLINE | ID: mdl-30304512

ABSTRACT

Nicotinamide mononucleotide adenylyltransferase 2 (NMNAT2) is an endogenous axon maintenance factor that preserves axon health by blocking Wallerian-like axon degeneration. Mice lacking NMNAT2 die at birth with severe axon defects in both the peripheral nervous system and central nervous system so the complete absence of NMNAT2 in humans is likely to be similarly harmful but probably rare. However, there is evidence of widespread natural variation in human NMNAT2 mRNA expression so it is important to establish whether reduced levels of NMNAT2 have consequences that impact health. While mice that express reduced levels of NMNAT2, either those heterozygous for a silenced Nmnat2 allele or compound heterozygous for one silenced and one partially silenced Nmnat2 allele, remain overtly normal into old age, we now report that Nmnat2 compound heterozygote mice present with early and age-dependent peripheral nerve axon defects. Compound heterozygote mice already have reduced numbers of myelinated sensory axons at 1.5 months and lose more axons, likely motor axons, between 18 and 24 months and, crucially, these changes correlate with early temperature insensitivity and a later-onset decline in motor performance. Slower neurite outgrowth and increased sensitivity to axonal stress are also evident in primary cultures of Nmnat2 compound heterozygote superior cervical ganglion neurons. These data reveal that reducing NMNAT2 levels below a particular threshold compromises the development of peripheral axons and increases their vulnerability to stresses. We discuss the implications for human neurological phenotypes where axons are longer and have to be maintained over a much longer lifespan.


Subject(s)
Axons/metabolism , Nicotinamide-Nucleotide Adenylyltransferase/metabolism , Age Factors , Animals , Female , Male , Mice , Nerve Degeneration , Neurogenesis , Neurons/metabolism , Nicotinamide-Nucleotide Adenylyltransferase/genetics , Primary Cell Culture
11.
J Phys Chem A ; 125(23): 5096-5102, 2021 Jun 17.
Article in English | MEDLINE | ID: mdl-34086463

ABSTRACT

Formates are a class of organic molecules emitted into the atmosphere from fuel additives and industrial solvents. Formate-derived esters can undergo a vast range of chemical reactions in the atmosphere, most of which are initiated by oxidation by hydroxyl radicals. One potential reaction upon their interaction with atmospheric water is proton transfer to form protonated formates. The goal of the present work is to explore the dissociation of these protonated species and thus their possible atmospheric fate. Tandem mass spectrometry was employed to study the unimolecular dissociation of the protonated forms of methyl- (1), ethyl- (2), isopropyl- (3), tert-butyl- (4), and phenylformate (5). 1 and 2 lose CO as a common fragmentation product, forming a protonated alcohol, and 2 also generates neutral ethanol (forming protonated CO). 3 and 4 readily lose the stable isopropyl and tert-butyl radicals as well as neutral alkenes propene and isobutene. Methanol loss is also observed from both ions. 5 exhibits both phenyl radical loss (similar to 3 and 4) and CO loss (like 1 and 2). Density functional theory was used to explore the observed minimum energy reaction pathways for each ion, and CBS-QB3 single-point energy calculations provided reliable energetics.

12.
J Environ Manage ; 281: 111882, 2021 Mar 01.
Article in English | MEDLINE | ID: mdl-33421937

ABSTRACT

Three of the primary functions of green roofs in urban areas are to delay rainwater runoff, moderate building temperatures, and ameliorate the urban heat island (UHI) effect. A major impediment to the survival of plants on an unirrigated extensive green roof (EGR) is the harsh rooftop environment, including high temperatures and limited water during dry periods. Factors that influence EGR thermal and hydrologic performance include the albedo (reflectivity) of the roof and the composition of the green roof substrate (growing media). In this study we used white, reflective shading structures and three different media formulations to evaluate EGR thermal and hydrologic performance in the Pacific Northwest, USA. Shading significantly reduced daytime mean and maximum EGR media temperatures and significantly increased nighttime mean and minimum temperatures, which may provide energy benefits to buildings. Mean media moisture was greater in shaded trays than in exposed (unshaded) trays but differences were not statistically significant. Warmer nighttime media temperatures and lack of dew formation in shaded trays may have partially compensated for greater daytime evaporation from exposed trays. Media composition did not significantly influence media temperature or moisture. Results of this study suggest that adding shade structures to green roofs will combine thermal, hydrologic, and ecological benefits, and help achieve temperature and light regimes that allow for greater plant diversity on EGRs.


Subject(s)
Conservation of Natural Resources , Hot Temperature , Cities , Northwestern United States , Temperature
13.
J Environ Manage ; 277: 111418, 2021 Jan 01.
Article in English | MEDLINE | ID: mdl-33080432

ABSTRACT

Green roofs are among the most popular type of green infrastructure implemented in highly urbanized watersheds due to their low cost and efficient utilization of unused or under-used space. In this study, we examined the effectiveness of green roofs to attenuate stormwater runoff across a large metropolitan area in the Pacific Northwest, United States. We utilized a spatially explicit ecohydrological watershed model called Visualizing Ecosystem Land Management Assessments (VELMA) to simulate the resulting stormwater hydrology of implementing green roofs over 25%, 50%, 75%, and 100% of existing buildings within four urban watersheds in Seattle, Washington, United States. We simulated the effects of two types of green roofs: extensive green roofs, which are characterized by shallow soil profiles and short vegetative cover, and intensive green roofs, which are characterized by deeper soil profiles and can support larger vegetation. While buildings only comprise approximately 10% of the total area within each of the four watersheds, our simulations showed that 100% implementation of green roofs on these buildings can achieve approximately 10-15% and 20-25% mean annual runoff reductions for extensive and intensive green roofs, respectively, over a 28-year simulation. These results provide an upper limit for volume reductions achievable by green roofs in these urban watersheds. We also showed that stormwater runoff reductions are proportionately smaller during higher flow regimes caused by increased precipitation, likely due to the limited storage capacity of saturated green roofs. In general, green roofs can be effective at reducing stormwater runoff, and their effectiveness is limited by both their areal extent and storage capacity. Our results showed that green roof implementation can be an effective stormwater management tool in highly urban areas, and we demonstrated that our modeling approach can be used to assess the watershed-scale hydrologic impacts of the widespread adoption of green roofs across large metropolitan areas.


Subject(s)
Hydrology , Water Movements , Conservation of Natural Resources , Ecosystem , Rain , Washington
14.
Appl Geochem ; 119: 1-104632, 2020 Aug 01.
Article in English | MEDLINE | ID: mdl-33746355

ABSTRACT

Urbanization contributes to the formation of novel elemental combinations and signatures in terrestrial and aquatic watersheds, also known as 'chemical cocktails.' The composition of chemical cocktails evolves across space and time due to: (1) elevated concentrations from anthropogenic sources, (2) accelerated weathering and corrosion of the built environment, (3) increased drainage density and intensification of urban water conveyance systems, and (4) enhanced rates of geochemical transformations due to changes in temperature, ionic strength, pH, and redox potentials. Characterizing chemical cocktails and underlying geochemical processes is necessary for: (1) tracking pollution sources using complex chemical mixtures instead of individual elements or compounds; (2) developing new strategies for co-managing groups of contaminants; (3) identifying proxies for predicting transport of chemical mixtures using continuous sensor data; and (4) determining whether interactive effects of chemical cocktails produce ecosystem-scale impacts greater than the sum of individual chemical stressors. First, we discuss some unique urban geochemical processes which form chemical cocktails, such as urban soil formation, human-accelerated weathering, urban acidification-alkalinization, and freshwater salinization syndrome. Second, we review and synthesize global patterns in concentrations of major ions, carbon and nutrients, and trace elements in urban streams across different world regions and make comparisons with reference conditions. In addition to our global analysis, we highlight examples from some watersheds in the Baltimore-Washington DC region, which show increased transport of major ions, trace metals, and nutrients across streams draining a well-defined land-use gradient. Urbanization increased the concentrations of multiple major and trace elements in streams draining human-dominated watersheds compared to reference conditions. Chemical cocktails of major and trace elements were formed over diurnal cycles coinciding with changes in streamflow, dissolved oxygen, pH, and other variables measured by high-frequency sensors. Some chemical cocktails of major and trace elements were also significantly related to specific conductance (p<0.05), which can be measured by sensors. Concentrations of major and trace elements increased, peaked, or decreased longitudinally along streams as watershed urbanization increased, which is consistent with distinct shifts in chemical mixtures upstream and downstream of other major cities in the world. Our global analysis of urban streams shows that concentrations of multiple elements along the Periodic Table significantly increase when compared with reference conditions. Furthermore, similar biogeochemical patterns and processes can be grouped among distinct mixtures of elements of major ions, dissolved organic matter, nutrients, and trace elements as chemical cocktails. Chemical cocktails form in urban waters over diurnal cycles, decades, and throughout drainage basins. We conclude our global review and synthesis by proposing strategies for monitoring and managing chemical cocktails using source control, ecosystem restoration, and green infrastructure. We discuss future research directions applying the watershed chemical cocktail approach to diagnose and manage environmental problems. Ultimately, a chemical cocktail approach targeting sources, transport, and transformations of different and distinct elemental combinations is necessary to more holistically monitor and manage the emerging impacts of chemical mixtures in the world's fresh waters.

15.
J Phys Chem A ; 123(16): 3569-3574, 2019 Apr 25.
Article in English | MEDLINE | ID: mdl-30939003

ABSTRACT

The reaction mechanisms for the loss of C2H2 from the ions of anthracene, phenanthrene, tetracene, and pyrene were calculated at the B3-LYP/6-311++G(2d,p) level of theory and compared to that previously published for ionized naphthalene. A common pathway emerged involving the isomerization of the molecular ions to azulene-containing analogues, followed by the contraction of the seven-member ring into a five- and four-member fused ring system, leading to the cleavage of C2H2. The key transition state was found to be for this last process, and its relative energy was consistent going from naphthalene to tetracene. That for pyrene, though, was significantly higher due to the inability of the azulene moiety to achieve a stable conformation because of the presence of the three fused rings. Thus, C2H2 loss is discriminated against in pericondensed PAHs. For catacondensed PAHs, C2H2 loss also drops in relative abundance as the PAH gets larger due to the increase in the number of available hydrogen atoms, increasing the rate constant for H atom loss over that for C2H2 loss as PAH size increases. The unimolecular reactions of four cyano-substituted polycyclic aromatic hydrocarbon (PAH) ions were also probed as a function of collision energy by collision-induced dissociation tandem mass spectrometry. As the size of the ring system increases, HCN loss decreases in importance relative to other processes (H and C2H2 loss). 9-Cyanophenanthrene ions were chosen for further exploration by theory and imaging photoelectron photoion coincidence (iPEPICO) spectroscopy. The calculated reaction pathway and energetics for C2H2 loss were consistent with those found above. The calculations suggest that larger PAHs of interest in the interstellar environment will behave independently of a CN substituent.

16.
J Phys Chem A ; 123(51): 10885-10892, 2019 Dec 26.
Article in English | MEDLINE | ID: mdl-31794665

ABSTRACT

The unimolecular dissociation of ionized tetralin was probed by tandem mass spectrometry, imaging photoelectron photoion coincidence (iPEPICO) spectroscopy, and theory. The major reactions observed were the loss of the hydrocarbons CH3•, C2H4, and C3H5• together with H•-atom loss. RRKM modeling of the iPEPICO data suggested a two-well potential energy surface. Ionized tetralin can lose all four neutrals via H-shift and ring-opening reactions or CH3• and C2H4 after interconversion to the 1-methylindane ion, a process similar to that found for ionized 1,2-dihydronaphthalene (isomerizing to form the 1-methylindene ion structure). This was confirmed at the B3LYP/6-31+G(d,p) level of theory, and potential mechanisms for all reactions are described. The ionization energy of tetralin was established from the threshold photoelectron spectrum to be 8.46 ± 0.01 eV.

17.
J Phys Chem A ; 123(24): 5027-5034, 2019 Jun 20.
Article in English | MEDLINE | ID: mdl-31150240

ABSTRACT

Collision-energy resolved tandem mass spectrometry was used to probe the trends in unimolecular fragmentation in a series of ionized amino-substituted polycyclic aromatic hydrocarbons ranging from naphthalene to pyrene. As the ring system expands, the dominant dissociation process changes from HNC loss (aniline) to H loss for 1-aminopyrene. Imaging photoelectron photoion coincidence spectroscopy of 1-aminopyrene yielded threshold photon-energy resolved breakdown curves, the Rice-Ramsperger-Kassel-Marcus modeling of which gave a 0 K activation energy, E0, for H loss of 3.8 ± 0.4 eV. Calculations at the CCSD/6-31G(d)//B3LYP/6-31G(d) level of theory were used to explore the possible reaction mechanisms for H, HNC, and C,N,H2 losses, and details of the reaction pathways are presented. The H atom loss was found to be due both to direct N-H bond cleavage and isomerization to form an azepine derivative.

18.
J Phys Chem A ; 123(50): 10694-10699, 2019 Dec 19.
Article in English | MEDLINE | ID: mdl-31765149

ABSTRACT

Tandem mass spectrometry was used to explore the trends in the unimolecular fragmentation of the ionized hydroxy-substituted polycyclic aromatic hydrocarbons 1-naphthol, 9-hydroxyphenanthrene, and 1-hydroxypyrene. The main dissociation reactions across all ring systems were CO- and HCO-losses, with ionized 1-naphthol also losing H atoms. Both ionized 1-naphthol and 9-hydroxyphenanthrene displayed the sequential loss of C2H2 and C4H2 from the [M-HCO]+ ions, reminiscent of unsubstituted PAH ions. CO-loss is slightly favored for 1-naphthol and 9-hydroxyphenanthrene, at low collision energy, but less so for 1-hydroxypyrene. Reaction mechanisms for HCO- and CO-losses from 1-hydroxypyrene were derived from CCSD/6-31G(d)//B3-LYP/6-31G(d) calculations. The CO-loss mechanism is dominated by two transition states: TS-A governing a 1,3-H shift in the molecular ion and TS-C which governs a ring-closing step to form a five-member ring in the product ion. HCO-loss occurs over a much flatter potential energy surface with the intermediate being the product ion bound to the carbon atom of HCO. Imaging photoelectron photoion coincidence spectroscopy of 1-hydroxypyrene yielded threshold photon-energy resolved breakdown curves and time-of-flight distributions that were modeled with RRKM theory to give 0 K reaction energies for HCO- and CO-losses of 3.92 ± 0.05 and 2.91 ± 0.05 eV, respectively. The entropies of activation for the two channels were very different, 14 and 95 JK-1 mol-1, respectively, a result consistent with the calculated mechanisms. The threshold photoelectron spectrum yielded an IE value of 7.14 ± 0.01 eV for 1-hydroxypyrene.

19.
J Phys Chem A ; 123(29): 6313-6318, 2019 Jul 25.
Article in English | MEDLINE | ID: mdl-31251045

ABSTRACT

The threshold photoelectron spectra (TPES) and ion dissociation breakdown curves for trifluoroacetic acid (TFA) and trifluoroacetic anhydride (TFAN) were measured by imaging photoelectron photoion coincidence spectroscopy employing both effusive room-temperature samples and samples introduced in a seeded molecular beam. The fine structure in the breakdown diagram of TFA mirroring the vibrational progression in the TPES suggests that direct ionization to the X̃+ state leads to parent ions with a lower "effective temperature" than nonresonant ionization in between the vibrational progression. Composite W1U, CBS-QB3, CBS-APNO, G3, and G4 calculations yielded an average ionization energy (IE) of 11.69 ± 0.06 eV, consistent with the experimental value of 11.64 ± 0.01 eV, based on Franck-Condon modeling of the TPES. The measured 0 K appearance energies (AE0K) for the reaction forming CO2H+ + CF3 from TFA were 11.92 for effusive data and 11.94 ± 0.01 eV for molecular beam data, consistent with the calculated composite method 0 K reaction energy of 11.95 ± 0.08 eV. Together with the 0 K heats of formation (ΔfH0K) of CO2H+ and CF3, this yields a ΔfH0K of neutral TFA of -1016.6 ± 1.5 kJ mol-1 (-1028.3 ± 1.5 kJ mol-1 at 298 K). TFAN did not exhibit a molecular ion at room-temperature conditions, but a small signal was observed when rovibrationally cold species were probed in a molecular beam. The two observed dissociation channels were CF3C(O)OC(O)+ + CF3 and the dominant, sequential reaction CF3CO+ + CF3 + CO2. Calculations revealed a low-energy isomer of ionized TFAN, incorporating the three moieties CF3CO+, CF3, and CO2 joined in a noncovalent complex, mediating its unimolecular dissociation.

20.
Ecol Eng ; 129: 123-133, 2019 Apr 01.
Article in English | MEDLINE | ID: mdl-32982067

ABSTRACT

Restoration and reconnection of floodplain systems provide multiple societal and ecosystem benefits, while providing municipalities the opportunity to attempt alternative approaches to maintain infrastructure protection and function. In some restored floodplains, treated wastewater effluent discharge is redirected over land instead of directly into rivers to allow natural flow and infiltration, to facilitate restoration designs such as levee setback, and to provide additional freshwater to floodplain ecosystems. However, indirect discharge of treated effluent over land may pose risks to surface and groundwater when pollutants like excess nutrients enter the floodplain and undergo transformation. We investigated the consequences for groundwater and surface water quality when effluent was redirected as open water channels over a floodplain surface. In this study, seasonal floodplain nutrient concentrations in groundwater and surface water were observed for more than 5 years as a floodplain and wastewater treatment plant underwent a major restoration project that included river-floodplain reconnection with levee setback and redirection of effluent discharge from a river channel to open flow across the restored floodplain. Nutrient loading to the surrounding floodplain groundwater and surface water was observed, but based on measures of hydrological connectivity, groundwater flow paths, and biogeochemistry, nutrients from the effluent moved within the floodplain with minimal effect to the surrounding floodplain water quality. We did not find evidence of substantial additional processing that could replace advanced nutrient treatment in this system, however we did observe evidence of diverse nutrient processes that may support enhanced retention if treatment channels were designed to enhance these processes. We suggest that indirect discharge of high quality treated effluent in a restored floodplain is a viable alternative to direct discharge into a river when groundwater flow directs that discharge to habitats where minimal nutrient sensitivity is expected.

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