Search | VHL CLAP/WR-PAHO/WHO

1.

Repeat polymorphisms underlie top genetic risk loci for glaucoma and colorectal cancer.

Mukamel, Ronen E; Handsaker, Robert E; Sherman, Maxwell A; Barton, Alison R; Hujoel, Margaux L A; McCarroll, Steven A; Loh, Po-Ru.

Cell ; 186(17): 3659-3673.e23, 2023 08 17.

Article in English | MEDLINE | ID: mdl-37527660

2.

Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions.

Thyme, Summer B; Pieper, Lindsey M; Li, Eric H; Pandey, Shristi; Wang, Yiqun; Morris, Nathan S; Sha, Carrie; Choi, Joo Won; Herrera, Kristian J; Soucy, Edward R; Zimmerman, Steve; Randlett, Owen; Greenwood, Joel; McCarroll, Steven A; Schier, Alexander F.

Cell ; 177(2): 478-491.e20, 2019 04 04.

Article in English | MEDLINE | ID: mdl-30929901

3.

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.

Saunders, Arpiar; Macosko, Evan Z; Wysoker, Alec; Goldman, Melissa; Krienen, Fenna M; de Rivera, Heather; Bien, Elizabeth; Baum, Matthew; Bortolin, Laura; Wang, Shuyu; Goeva, Aleksandrina; Nemesh, James; Kamitaki, Nolan; Brumbaugh, Sara; Kulp, David; McCarroll, Steven A.

Cell ; 174(4): 1015-1030.e16, 2018 08 09.

Article in English | MEDLINE | ID: mdl-30096299

4.

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.

Shekhar, Karthik; Lapan, Sylvain W; Whitney, Irene E; Tran, Nicholas M; Macosko, Evan Z; Kowalczyk, Monika; Adiconis, Xian; Levin, Joshua Z; Nemesh, James; Goldman, Melissa; McCarroll, Steven A; Cepko, Constance L; Regev, Aviv; Sanes, Joshua R.

Cell ; 166(5): 1308-1323.e30, 2016 Aug 25.

Article in English | MEDLINE | ID: mdl-27565351

5.

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Macosko, Evan Z; Basu, Anindita; Satija, Rahul; Nemesh, James; Shekhar, Karthik; Goldman, Melissa; Tirosh, Itay; Bialas, Allison R; Kamitaki, Nolan; Martersteck, Emily M; Trombetta, John J; Weitz, David A; Sanes, Joshua R; Shalek, Alex K; Regev, Aviv; McCarroll, Steven A.

Cell ; 161(5): 1202-1214, 2015 May 21.

Article in English | MEDLINE | ID: mdl-26000488

6.

A concerted neuron-astrocyte program declines in ageing and schizophrenia.

Ling, Emi; Nemesh, James; Goldman, Melissa; Kamitaki, Nolan; Reed, Nora; Handsaker, Robert E; Genovese, Giulio; Vogelgsang, Jonathan S; Gerges, Sherif; Kashin, Seva; Ghosh, Sulagna; Esposito, John M; Morris, Kiely; Meyer, Daniel; Lutservitz, Alyssa; Mullally, Christopher D; Wysoker, Alec; Spina, Liv; Neumann, Anna; Hogan, Marina; Ichihara, Kiku; Berretta, Sabina; McCarroll, Steven A.

Nature ; 627(8004): 604-611, 2024 Mar.

Article in English | MEDLINE | ID: mdl-38448582

7.

Genetic variation in human DNA replication timing.

Koren, Amnon; Handsaker, Robert E; Kamitaki, Nolan; Karlic, Rosa; Ghosh, Sulagna; Polak, Paz; Eggan, Kevin; McCarroll, Steven A.

Cell ; 159(5): 1015-1026, 2014 Nov 20.

Article in English | MEDLINE | ID: mdl-25416942

8.

Conserved and divergent gene regulatory programs of the mammalian neocortex.

Zemke, Nathan R; Armand, Ethan J; Wang, Wenliang; Lee, Seoyeon; Zhou, Jingtian; Li, Yang Eric; Liu, Hanqing; Tian, Wei; Nery, Joseph R; Castanon, Rosa G; Bartlett, Anna; Osteen, Julia K; Li, Daofeng; Zhuo, Xiaoyu; Xu, Vincent; Chang, Lei; Dong, Keyi; Indralingam, Hannah S; Rink, Jonathan A; Xie, Yang; Miller, Michael; Krienen, Fenna M; Zhang, Qiangge; Taskin, Naz; Ting, Jonathan; Feng, Guoping; McCarroll, Steven A; Callaway, Edward M; Wang, Ting; Lein, Ed S; Behrens, M Margarita; Ecker, Joseph R; Ren, Bing.

Nature ; 624(7991): 390-402, 2023 Dec.

Article in English | MEDLINE | ID: mdl-38092918

9.

Human DDK rescues stalled forks and counteracts checkpoint inhibition at unfired origins to complete DNA replication.

Jones, Mathew J K; Gelot, Camille; Munk, Stephanie; Koren, Amnon; Kawasoe, Yoshitaka; George, Kelly A; Santos, Ruth E; Olsen, Jesper V; McCarroll, Steven A; Frattini, Mark G; Takahashi, Tatsuro S; Jallepalli, Prasad V.

Mol Cell ; 81(3): 426-441.e8, 2021 02 04.

Article in English | MEDLINE | ID: mdl-33545059

10.

Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes.

Hammond, Timothy R; Dufort, Connor; Dissing-Olesen, Lasse; Giera, Stefanie; Young, Adam; Wysoker, Alec; Walker, Alec J; Gergits, Frederick; Segel, Michael; Nemesh, James; Marsh, Samuel E; Saunders, Arpiar; Macosko, Evan; Ginhoux, Florent; Chen, Jinmiao; Franklin, Robin J M; Piao, Xianhua; McCarroll, Steven A; Stevens, Beth.

Immunity ; 50(1): 253-271.e6, 2019 01 15.

Article in English | MEDLINE | ID: mdl-30471926

11.

Of rats and men.

Patil, Christopher K; McCarroll, Steven A.

Cell ; 154(3): 481-3, 2013 Aug 01.

Article in English | MEDLINE | ID: mdl-23911315

12.

Monogenic and polygenic inheritance become instruments for clonal selection.

Loh, Po-Ru; Genovese, Giulio; McCarroll, Steven A.

Nature ; 584(7819): 136-141, 2020 08.

Article in English | MEDLINE | ID: mdl-32581363

13.

Insights into variation in meiosis from 31,228 human sperm genomes.

Bell, Avery Davis; Mello, Curtis J; Nemesh, James; Brumbaugh, Sara A; Wysoker, Alec; McCarroll, Steven A.

Nature ; 583(7815): 259-264, 2020 07.

Article in English | MEDLINE | ID: mdl-32494014

14.

Chromosomal alterations among age-related haematopoietic clones in Japan.

Terao, Chikashi; Suzuki, Akari; Momozawa, Yukihide; Akiyama, Masato; Ishigaki, Kazuyoshi; Yamamoto, Kazuhiko; Matsuda, Koichi; Murakami, Yoshinori; McCarroll, Steven A; Kubo, Michiaki; Loh, Po-Ru; Kamatani, Yoichiro.

Nature ; 584(7819): 130-135, 2020 08.

Article in English | MEDLINE | ID: mdl-32581364

15.

Innovations present in the primate interneuron repertoire.

Krienen, Fenna M; Goldman, Melissa; Zhang, Qiangge; C H Del Rosario, Ricardo; Florio, Marta; Machold, Robert; Saunders, Arpiar; Levandowski, Kirsten; Zaniewski, Heather; Schuman, Benjamin; Wu, Carolyn; Lutservitz, Alyssa; Mullally, Christopher D; Reed, Nora; Bien, Elizabeth; Bortolin, Laura; Fernandez-Otero, Marian; Lin, Jessica D; Wysoker, Alec; Nemesh, James; Kulp, David; Burns, Monika; Tkachev, Victor; Smith, Richard; Walsh, Christopher A; Dimidschstein, Jordane; Rudy, Bernardo; S Kean, Leslie; Berretta, Sabina; Fishell, Gord; Feng, Guoping; McCarroll, Steven A.

Nature ; 586(7828): 262-269, 2020 10.

Article in English | MEDLINE | ID: mdl-32999462

16.

Author Correction: Innovations present in the primate interneuron repertoire.

Krienen, Fenna M; Goldman, Melissa; Zhang, Qiangge; Del Rosario, Ricardo C H; Florio, Marta; Machold, Robert; Saunders, Arpiar; Levandowski, Kirsten; Zaniewski, Heather; Schuman, Benjamin; Wu, Carolyn; Lutservitz, Alyssa; Mullally, Christopher D; Reed, Nora; Bien, Elizabeth; Bortolin, Laura; Fernandez-Otero, Marian; Lin, Jessica D; Wysoker, Alec; Nemesh, James; Kulp, David; Burns, Monika; Tkachev, Victor; Smith, Richard; Walsh, Christopher A; Dimidschstein, Jordane; Rudy, Bernardo; Kean, Leslie S; Berretta, Sabina; Fishell, Gord; Feng, Guoping; McCarroll, Steven A.

Nature ; 588(7837): E17, 2020 Dec.

Article in English | MEDLINE | ID: mdl-33230336

17.

Complement genes contribute sex-biased vulnerability in diverse disorders.

Kamitaki, Nolan; Sekar, Aswin; Handsaker, Robert E; de Rivera, Heather; Tooley, Katherine; Morris, David L; Taylor, Kimberly E; Whelan, Christopher W; Tombleson, Philip; Loohuis, Loes M Olde; Boehnke, Michael; Kimberly, Robert P; Kaufman, Kenneth M; Harley, John B; Langefeld, Carl D; Seidman, Christine E; Pato, Michele T; Pato, Carlos N; Ophoff, Roel A; Graham, Robert R; Criswell, Lindsey A; Vyse, Timothy J; McCarroll, Steven A.

Nature ; 582(7813): 577-581, 2020 06.

Article in English | MEDLINE | ID: mdl-32499649

18.

BCFtools/liftover: an accurate and comprehensive tool to convert genetic variants across genome assemblies.

Genovese, Giulio; Rockweiler, Nicole B; Gorman, Bryan R; Bigdeli, Tim B; Pato, Michelle T; Pato, Carlos N; Ichihara, Kiku; McCarroll, Steven A.

Bioinformatics ; 40(2)2024 01 02.

Article in English | MEDLINE | ID: mdl-38261650

19.

Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex.

Zemke, Nathan R; Armand, Ethan J; Wang, Wenliang; Lee, Seoyeon; Zhou, Jingtian; Li, Yang Eric; Liu, Hanqing; Tian, Wei; Nery, Joseph R; Castanon, Rosa G; Bartlett, Anna; Osteen, Julia K; Li, Daofeng; Zhuo, Xiaoyu; Xu, Vincent; Chang, Lei; Dong, Keyi; Indralingam, Hannah S; Rink, Jonathan A; Xie, Yang; Miller, Michael; Krienen, Fenna M; Zhang, Qiangge; Taskin, Naz; Ting, Jonathan; Feng, Guoping; McCarroll, Steven A; Callaway, Edward M; Wang, Ting; Lein, Ed S; Behrens, M Margarita; Ecker, Joseph R; Ren, Bing.

Nature ; 625(7996): E26, 2024 Jan.

Article in English | MEDLINE | ID: mdl-38200319

20.

Genetic predisposition to mosaic Y chromosome loss in blood.

Thompson, Deborah J; Genovese, Giulio; Halvardson, Jonatan; Ulirsch, Jacob C; Wright, Daniel J; Terao, Chikashi; Davidsson, Olafur B; Day, Felix R; Sulem, Patrick; Jiang, Yunxuan; Danielsson, Marcus; Davies, Hanna; Dennis, Joe; Dunlop, Malcolm G; Easton, Douglas F; Fisher, Victoria A; Zink, Florian; Houlston, Richard S; Ingelsson, Martin; Kar, Siddhartha; Kerrison, Nicola D; Kinnersley, Ben; Kristjansson, Ragnar P; Law, Philip J; Li, Rong; Loveday, Chey; Mattisson, Jonas; McCarroll, Steven A; Murakami, Yoshinori; Murray, Anna; Olszewski, Pawel; Rychlicka-Buniowska, Edyta; Scott, Robert A; Thorsteinsdottir, Unnur; Tomlinson, Ian; Moghadam, Behrooz Torabi; Turnbull, Clare; Wareham, Nicholas J; Gudbjartsson, Daniel F; Kamatani, Yoichiro; Hoffmann, Eva R; Jackson, Steve P; Stefansson, Kari; Auton, Adam; Ong, Ken K; Machiela, Mitchell J; Loh, Po-Ru; Dumanski, Jan P; Chanock, Stephen J; Forsberg, Lars A.

Nature ; 575(7784): 652-657, 2019 11.

Article in English | MEDLINE | ID: mdl-31748747

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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