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1.
T cell development in a dish.
Mukhopadhyay, Madhura.
Nat Methods ; 18(1): 35, 2021 01.
Article in English | MEDLINE | ID: mdl-33408394

ABSTRACT

Artificial thymic organoid systems recapitulate murine thymopoiesis in vitro.


Subject(s)
Hematopoietic Stem Cells , T-Lymphocytes , Animals , Cell Differentiation , Mice , Organoids
2.
Neural networks for biomechanics.
Mukhopadhyay, Madhura.
Nat Methods ; 21(3): 370, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38472462

Subject(s)
Artificial Intelligence , Neural Networks, Computer , Biomechanical Phenomena
3.
A map of mouse embryogenesis.
Mukhopadhyay, Madhura.
Nat Methods ; 21(4): 549, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38609558

Subject(s)
Animals , Mice
4.
Spotting T and B cell receptors.
Mukhopadhyay, Madhura.
Nat Methods ; 21(2): 157, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38347136
5.
Immune intestine interfaces in vitro.
Mukhopadhyay, Madhura.
Nat Methods ; 21(10): 1785, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39384988
6.
Ringside seats to a pandemic.
Mukhopadhyay, Madhura.
Nat Methods ; 21(10): 1783, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39384999

Subject(s)
COVID-19 , Pandemics , SARS-CoV-2 , COVID-19/epidemiology , COVID-19/virology , Humans
7.
Mechanics of morphogenesis.
Mukhopadhyay, Madhura.
Nat Methods ; 21(6): 929, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38866987

Subject(s)
Morphogenesis , Animals , Humans , Biomechanical Phenomena
8.
Multiplexed base editing.
Mukhopadhyay, Madhura.
Nat Methods ; 21(7): 1144, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38997592

Subject(s)
CRISPR-Cas Systems , Gene Editing , Gene Editing/methods , Humans
9.
CD4 T cell antigen discovery.
Mukhopadhyay, Madhura.
Nat Methods ; 21(1): 10, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38212552

Subject(s)
Antigens , CD4-Positive T-Lymphocytes , Antigen-Presenting Cells , Lymphocyte Activation , Receptors, Antigen, T-Cell
10.
Ex utero development of primate embryos.
Mukhopadhyay, Madhura.
Nat Methods ; 20(7): 982, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37434008
11.
Synthetic tissue environments.
Mukhopadhyay, Madhura.
Nat Methods ; 20(12): 1871, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38057515
12.
Exploring the embryo.
Mukhopadhyay, Madhura.
Nat Methods ; 20(1): 32, 2023 01.
Article in English | MEDLINE | ID: mdl-36635543

Subject(s)
Embryo, Mammalian , Embryonic Development
13.
Immunomechanics.
Mukhopadhyay, Madhura.
Nat Methods ; 20(1): 35, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36635550
14.
Modeling symmetry breaking.
Mukhopadhyay, Madhura.
Nat Methods ; 20(3): 347, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36899165
15.
ENTERing the world of immune cells.
Mukhopadhyay, Madhura.
Nat Methods ; 20(2): 177, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36765138
16.
Bat-virus entanglements.
Mukhopadhyay, Madhura.
Nat Methods ; 20(4): 483, 2023 04.
Article in English | MEDLINE | ID: mdl-37046017

Subject(s)
Chiroptera , Animals , Virus Replication
17.
A peek into early human embryogenesis.
Mukhopadhyay, Madhura.
Nat Methods ; 20(8): 1130, 2023 08.
Article in English | MEDLINE | ID: mdl-37553402

Subject(s)
Polyethylene Glycols , Polymers , Humans , Embryonic Development
18.
Modeling morphogenesis.
Mukhopadhyay, Madhura.
Nat Methods ; 20(11): 1622, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37935984

Subject(s)
Models, Biological , Morphogenesis
19.
Tracing lymphocyte development.
Mukhopadhyay, Madhura.
Nat Methods ; 20(6): 785, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37296341
20.
Machine learning for MHC II specificities.
Mukhopadhyay, Madhura.
Nat Methods ; 20(5): 632, 2023 05.
Article in English | MEDLINE | ID: mdl-37169926

Subject(s)
Histocompatibility Antigens Class II , Histocompatibility Antigens Class I , Machine Learning
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