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1.
Phys Chem Chem Phys ; 26(4): 3219-3228, 2024 Jan 24.
Article in English | MEDLINE | ID: mdl-38193631

ABSTRACT

A fundamental understanding of the acid gas (H2S and CO2) chemistry is key to efficiently implement the desulphurisation process and even the production of clean fuels such as hydrogen or syngas. In this work, we developed a new kinetic model for the pyrolysis and oxidation of hydrogen sulphide by merging two previously reported models with the goal of covering a wider range of conditions and including the effect of carbon dioxide. The resulting model, which consists of 75 species and 514 reactions, was used to conduct rate of production and sensitivity analysis in plug flow reactor simulations, and the results were used to determine the most prominent reactions in which hydrogen sulphide, molecular hydrogen, and sulphur monoxide are involved. The resulting list of important reactions was screened and the kinetics of three of them, i.e., SO2 + S2 → S2O + SO, S2O + S2 → S3 + SO, and SO + SH → S2 + OH, was found to warrant further investigation. With the goal of improving the accurancy of our new kinetic model, we carried out a robust quantum chemistry and Rice-Ramsperger-Kassel-Marcus master equation study to obtain, for the first time, the forward and reverse rate constants for those three reactions at temperatures and pressures of interest for combustion and atmospheric chemistry. This work is the first step of a kinetic study that is aimed at improving the understanding of the chemistry of the pyrolysis and oxidation of H2S, highlighting the importance of sulphur-sulphur interactions and providing a fundamental basis for future kinetic models of H2S not only in the field of combustion, but also in atmospheric chemistry.

2.
J Chem Phys ; 161(4)2024 Jul 28.
Article in English | MEDLINE | ID: mdl-39082372

ABSTRACT

The successful design and device integration of nanoscale heterointerfaces hinges upon precise manipulation of both ground- and excited-state charge carrier (electron and hole) densities. However, it is particularly challenging to quantify these charge carrier densities in nanoscale materials, leading to uncertainties in the mechanisms of many carrier density-dependent properties and processes. Here, we demonstrate a method that utilizes steady-state and transient absorption spectroscopies to correlate monolayer MoS2 electron density with the easily measured metric of excitonic optical absorption quenching in a variety of mixed-dimensionality s-SWCNT/MoS2 heterostructures. By employing a 2D phase-space filling model, the resulting correlation elucidates the relationship between charge density, local dielectric environment, and concomitant excitonic properties. The phase-space filling model is also able to describe existing trends from the literature on transistor-based measurements on MoS2, WS2, and MoSe2 monolayers that were not previously compared to a physical model, providing additional support for our method and results. The findings provide a pathway to the community for estimating both ground- and excited-state carrier densities in a wide range of TMDC-based systems.

3.
Phys Chem Chem Phys ; 24(20): 12601-12620, 2022 May 25.
Article in English | MEDLINE | ID: mdl-35579396

ABSTRACT

The presence of two functional groups (OH and double bond) in C5 methyl-substituted enols (i.e., isopentenols), such as 3-methyl-2-buten-1-ol (prenol) and 3-methyl-3-buten-1-ol (isoprenol), makes them excellent biofuel candidates as fuel additives. As OH radicals are abundant in both combustion and atmospheric environments, OH-initiated oxidation of these isopentenols over wide ranges of temperatures and pressures needs to be investigated. In alkenes, OH addition to the double bond is prominent at low temperatures (i.e., below ∼700 K), and H-atom abstraction dominates at higher temperatures. However, we find that the OH-initiated oxidation of prenol and isoprenol displays a larger role for OH addition at higher temperatures. In this work, the reaction kinetics of prenol and isoprenol with OH radicals was investigated over the temperature range of 900-1290 K and pressure of 1-5 atm by utilizing a shock tube and OH laser diagnostic. To rationalize these chemical systems, variational transition state theory calculations with multi-structural torsional anharmonicity and small curvature tunneling corrections were run using a potential energy surface characterized at the UCCSD(T)/jun-cc-pVQZ//M06-2X/6-311++G(2df,2pd) level of theory. A good agreement was observed between the experiment and theory, with both predicting a non-Arrhenius behavior and negligible pressure effects. OH additions to the double bond of prenol and isoprenol were found to be important, with at least 50% contribution to the total rate constants even at temperatures as high as 700 and 2000 K, respectively. This behavior was attributed to the stabilizing effect induced by hydrogen bonding between the reacting OH radical and the OH functional group of isopentenols at the saddle points. These stabilizing intermolecular interactions help mitigate the entropic effects that hinder association reactions as temperature increases, thus extending the prominent role of addition pathways to high temperatures. The site-specific rate constants were also found to be slower than their analogous reactions of OH + n-alkenes.

4.
J Phys Chem A ; 125(15): 3177-3188, 2021 Apr 22.
Article in English | MEDLINE | ID: mdl-33834773

ABSTRACT

Nicotine exposure results in health risks not only for smokers but also for second- and third-hand smokers. Unraveling nicotine's degradation mechanism and the harmful chemicals that are produced under different conditions is vital to assess exposure risks. We performed a theoretical study to describe the early chemistry of nicotine degradation by investigating two important reactions that nicotine can undergo: hydrogen abstraction by hydroxyl radicals and unimolecular dissociation. The former contributes to the control of the degradation mechanism below 800 K due to a non-Arrhenius kinetics, which implies an enhancement of reactivity as temperature decreases. The latter becomes important at higher temperatures due to its larger activation energy. This change in the degradation mechanism is expected to affect the composition of vapors inhaled by smokers and room occupants. Conventional cigarettes, which operate at temperatures higher than 1000 K, are more prone to yield harmful pyridinyl radicals via nicotine dissociation, while nicotine in electronic cigarettes and vaporizers, with operating temperatures below 600 K, will be more likely degraded by hydroxyl radicals, resulting in a vapor with a different composition. Although low-temperature nicotine delivery devices have been claimed to be less harmful due to their nonburning operating conditions, the non-Arrhenius kinetics that we observed for the degradation mechanism below 873 K suggests that nicotine degradation may be more rapidly initiated as temperature is reduced, indicating that these devices may be more harmful than it is commonly assumed.


Subject(s)
Nicotine/metabolism , Smokers , Smoking Devices , Tobacco Products , Hot Temperature , Humans , Kinetics , Molecular Conformation , Nicotine/chemistry , Quantum Theory
5.
BMC Urol ; 21(1): 56, 2021 Apr 07.
Article in English | MEDLINE | ID: mdl-33827527

ABSTRACT

BACKGROUND: Xanthogranulomatous pyelonephritis (XGP) is an inflammatory condition of the kidney and its treatment most often involves a combination of antibiotics and nephrectomy. This study aimed to define the clinical features and management of XGP, focusing on microbiological aspects and antibiotic therapy. METHODS: We performed a retrospective study of 27 cases of XGP diagnosed between January 2001 and January 2020 to analyse their clinical and management characteristics. In addition, a literature review was conducted of XGP case series covering the period from 2000-2020. We searched PubMed for case series through April 2020 without language restrictions. Studies reporting case series of XGP (more than ten cases) were included if they were relevant to this study. RESULTS: Twenty-seven patients were diagnosed with XGP, and 26 of them were histologically proven to have XGP. A total of 81.5% of the patients were female and the mean age was 59.6 years (SD 19.2). The most frequent symptoms were flank pain (70.4%) and fever (59.3%), while 77.8% of patients had renal stones. Proteus mirabilis was detected in the urine culture in 18.5% of patients, followed by detection of Escherichia coli in 14.8% of patients. The computed tomography (CT) findings included perirenal (29.6%) or pararenal (29.6%) involvement in the majority of patients. Twenty-six patients underwent nephrectomy. Piperacillin/tazobactam and ceftriaxone were the most commonly prescribed antibiotics for treatment. The reported piperacillin/tazobactam and ceftriaxone resistance rates were 14.3% and 16.6%, respectively. Twenty-six case series were included in the literature review, reporting 693 cases in total. CONCLUSION: We found well-established characteristics of XGP patients among series in terms of previous history, clinical, laboratory and imaging findings, and operative and postoperative outcomes. It is important to know the clinical presentation and potential severity of XGP, as well as the most frequently involved microorganisms and their antibiotic resistance profiles, to select the most appropriate antibiotic therapy.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Bacterial Infections/drug therapy , Drug Resistance, Bacterial , Pyelonephritis, Xanthogranulomatous/drug therapy , Pyelonephritis, Xanthogranulomatous/microbiology , Adult , Aged , Female , Humans , Male , Middle Aged , Retrospective Studies
6.
Int J Obes (Lond) ; 44(7): 1487-1496, 2020 07.
Article in English | MEDLINE | ID: mdl-32433603

ABSTRACT

BACKGROUND/OBJECTIVES: Excessive body mass index (BMI) has been linked to a low-grade chronic inflammation state. Unhealthy BMI has also been related to neuroanatomical changes in adults. Research in adolescents is relatively limited and has produced conflicting results. This study aims to address the relationship between BMI and adolescents' brain structure as well as to test the role that inflammatory adipose-related agents might have over this putative link. METHODS: We studied structural MRI and serum levels of interleukin-6, tumor necrosis factor alpha (TNF-α), C-reactive protein and fibrinogen in 65 adolescents (aged 12-21 years). Relationships between BMI, cortical thickness and surface area were tested with a vertex-wise analysis. Subsequently, we used backward multiple linear regression models to explore the influence of inflammatory parameters in each brain-altered area. RESULTS: We found a negative association between cortical thickness and BMI in the left lateral occipital cortex (LOC) and the right precentral gyrus as well as a positive relationship between surface area and BMI in the left rostral middle frontal gyrus and the right superior frontal gyrus. In addition, we found that higher fibrinogen serum concentrations were related to thinning within the left LOC (ß = -0.45, p < 0.001), while higher serum levels of TNF-α were associated to a greater surface area in the right superior frontal gyrus (ß = 0.32, p = 0.045). Besides, we have also identified a trend that negatively correlates the cortical thickness of the left fusiform gyrus with the increases in BMI. It was also associated to fibrinogen (ß = -0.33, p = 0.035). CONCLUSIONS: These results suggest that adolescents' body mass increases are related with brain abnormalities in areas that could play a relevant role in some aspects of feeding behavior. Likewise, we have evidenced that these cortical changes were partially explained by inflammatory agents such as fibrinogen and TNF-α.


Subject(s)
Body Mass Index , Inflammation/blood , Prefrontal Cortex/anatomy & histology , Adolescent , Biomarkers/blood , C-Reactive Protein/analysis , Child , Female , Fibrinogen/analysis , Humans , Interleukin-6/blood , Male , Spain , Tumor Necrosis Factor-alpha/blood , Young Adult
7.
Phys Chem Chem Phys ; 22(16): 9029-9039, 2020 Apr 29.
Article in English | MEDLINE | ID: mdl-32293625

ABSTRACT

Radical-radical association reactions are challenging to address theoretically due to difficulties finding the bottleneck that variationally minimizes the reactive flux. For this purpose, the variable reaction coordinate (VRC) formulation of the variational transition state theory (VTST) represents an appropriate tool. In this work, we revisited the kinetics of two radical-radical association reactions of importance in combustion modelling and poly-aromatic hydrocarbon (PAH) chemistry by performing VRC calculations: benzyl + HO2 and benzoxyl + OH, both forming the adduct benzyl hydroperoxide. Our calculated rate constants are significantly lower than those previously reported based on VTST calculations, which results from a more efficient minimization of the reactive flux through the bottleneck achieved by the VRC formulation. Both reactions show different trends in the variation of their rate constants with temperature. We observed that if the pair of single occupied molecular orbitals (SOMOs) of the associating radicals show a similar nature, i.e. similar character, and thereby a small energy gap, a highly stabilized transition state structure is formed as the result of a very efficient SOMO-SOMO overlap, which may cancel out the free energy bottleneck for the formation of the adduct and result in large rate constants with a negative temperature dependence. This is the case of the benzoxyl and OH radical pair, whose SOMOs show O2p nature with an energy gap of 20.2 kcal mol-1. On the other hand, the benzyl and HO2 radical pair shows lower rate constants with a positive temperature dependence due to the larger difference between both SOMOs (a 28.9 kcal mol-1 energy gap) as a consequence of the contribution of the multiple resonance structures of the benzyl radical. The reverse dissociation rate constants were also calculated using multi-structural torsional anharmonicity partition functions, which were not included in previous work, and the results show a much slower dissociation of benzyl hydroperoxide. Our work may help to improve kinetic models of interest in combustion and PAH formation, as well as to gain further understanding of radical-radical association reactions, which are ubiquitous in different environments.

8.
J Phys Chem A ; 124(31): 6277-6286, 2020 Aug 06.
Article in English | MEDLINE | ID: mdl-32663402

ABSTRACT

The system-specific quantum Rice-Ramsperger-Kassel (SS-QRRK) theory (J. Am. Chem. Soc. 2016, 138, 2690) is suitable to determine rate constants below the high-pressure limit. Its current implementation allows incorporating variational effects, multidimensional tunneling, and multistructural torsional anharmonicity in rate constant calculations. Master equation solvers offer a more rigorous approach to compute pressure-dependent rate constants, but several implementations available in the literature do not incorporate the aforementioned effects. However, the SS-QRRK theory coupled with a formulation of the modified strong collision model underestimates the value of unimolecular pressure-dependent rate constants in the high-temperature regime for reactions involving large molecules. This underestimation is a consequence of the definition for collision efficiency, which is part of the energy transfer model. Selection of the energy transfer model and its parameters constitutes a common issue in pressure-dependent calculations. To overcome this underestimation problem, we evaluated and implemented in a bespoke Python code two alternative definitions for the collision efficiency using the SS-QRRK theory and tested their performance by comparing the pressure-dependent rate constants with the Rice-Ramsperger-Kassel-Marcus/Master Equation (RRKM/ME) results. The modeled systems were the tautomerization of propen-2-ol and the decomposition of 1-propyl, 1-butyl, and 1-pentyl radicals. One of the tested definitions, which Dean et al. explicitly derived (Z. Phys. Chem. 2000, 214, 1533), corrected the underestimation of the pressure-dependent rate constants and, in addition, qualitatively reproduced the trend of RRKM/ME data. Therefore, the used SS-QRRK theory with accurate definitions for the collision efficiency can yield results that are in agreement with those from more sophisticated methodologies such as RRKM/ME.

9.
J Phys Chem A ; 124(31): 6270-6276, 2020 Aug 06.
Article in English | MEDLINE | ID: mdl-32648745

ABSTRACT

In spite of increasing importance of cyclic hydrocarbons in various chemical systems, studies on the fundamental properties of these compounds, such as enthalpy of formation, are still scarce. One of the reasons for this is the fact that the estimation of the thermodynamic properties of cyclic hydrocarbon species via cost-effective computational approaches, such as group additivity (GA), has several limitations and challenges. In this study, a machine learning (ML) approach is proposed using a support vector regression (SVR) algorithm to predict the standard enthalpy of formation of cyclic hydrocarbon species. The model is developed based on a thoroughly selected dataset of accurate experimental values of 192 species collected from the literature. The molecular descriptors used as input to the SVR are calculated via alvaDesc software, which computes in total 5255 features classified into 30 categories. The developed SVR model has an average error of approximately 10 kJ/mol. In comparison, the SVR model outperforms the GA approach for complex molecules and can be therefore proposed as a novel data-driven approach to estimate enthalpy values for complex cyclic species. A sensitivity analysis is also conducted to examine the relevant features that play a role in affecting the standard enthalpy of formation of cyclic species. Our species dataset is expected to be updated and expanded as new data are available to develop a more accurate SVR model with broader applicability.

11.
Health Qual Life Outcomes ; 17(1): 90, 2019 May 24.
Article in English | MEDLINE | ID: mdl-31126343

ABSTRACT

OBJECTIVE: The aim of this research was to assess university students' health-related quality of life whether they use some contraceptive method or not. METHODS: This research is a cross-sectional study. Female participants who studied a degree in health at the University of Seville (Spain) were recruited. Respondents completed a demographic questionnaire and health-related quality of life was measured with validated instrument SEC-QoL (Sociedad Española de Contracepción- Quality of Life) in Spanish that measured five dimensions: sexual, social, breast, menstrual and psychosocial. RESULTS: A total of 992 women aged 21.37 (3.6) years old participated in this study. Women who used a contraceptive method reached higher scores at the SEC-QoL questionnaire 47.09 (17.04) and 46.91 (18.73) than those that didn't. Likewise, women who chose a hormonal method showed a better overall health-related quality of life, compared to those who used a non-hormonal method. Participants who used hormonal contraceptives obtained higher scores in all health-related quality of life domains (social, menstrual, breast and sexual), except psychological domain when compared to those who used a non hormonal method or none. Furthermore, a moderated mediation model showed that the effect of the current contraceptive method on health-related quality of life was partially explained by the moderated mediation of the time using this method, the reason for using it and the existence of a partner. CONCLUSION: The usage of hormonal contraceptives increases health-related quality of life in young women. Several variables regarding the experience with contraceptive methods should be considered in order to examine the effect on health-related quality of life in undergraduate women.


Subject(s)
Contraception Behavior/psychology , Contraception/statistics & numerical data , Quality of Life , Adolescent , Adult , Case-Control Studies , Cross-Sectional Studies , Female , Humans , Sexual Behavior/statistics & numerical data , Spain , Surveys and Questionnaires , Young Adult
12.
J Phys Chem A ; 123(6): 1131-1139, 2019 Feb 14.
Article in English | MEDLINE | ID: mdl-30657678

ABSTRACT

We present a method based on kinetic molecular theory that identifies reactions of various molecularities in molecular dynamics (MD) simulations of bulk gases. The method allows characterization of the thermodynamic conditions at which higher than bimolecular reactions are a factor in the mechanisms of complex gas-phase chemistry. Starting with Bodenstein's definition of termolecular collisions we derive analytical expressions for the frequency of higher molecularity collisions. We have developed a relationship for the ratio of the frequencies of termolecular to bimolecular collisions in terms of the temperature, density, and collision times. To demonstrate the method, we used ReaxFF in LAMMPS to carry out MD simulations for NVT ensembles of mixtures of H2-O2 over the density range 120.2-332.7 kg m-3 and temperature range 3000-5000 K. The simulations yield ReaxFF-based predictions of the relative importance of termolecular collisions O2···H2···O2 and bimolecular collisions O2···H2 in the early chemistry of hydrogen combustion.

13.
J Phys Chem A ; 123(38): 8305-8313, 2019 Sep 26.
Article in English | MEDLINE | ID: mdl-31464441

ABSTRACT

Thermodynamic properites of molecules are used widely in the study of reactive processes. Such properties are typically measured via experiments or calculated by a variety of computational chemistry methods. In this work, machine learning (ML) models for estimation of standard enthalpy of formation at 298.15 K are developed for three classes of acyclic and closed-shell hydrocarbons, viz. alkanes, alkenes, and alkynes. Initially, an extensive literature survey is performed to collect standard enthalpy data for training ML models. A commercial software (Dragon) is used to obtain a wide set of molecular descriptors by providing SMILES strings. The molecular descriptors are used as input features for the ML models. Support vector regression (SVR) and artificial neural networks are used with a two-level K-fold cross-validation (K-fold CV) workflow. The first level is for estimation of accuracy of both the ML models, and the second level is for generation of the final models. The SVR model is selected as the best model based on error estimates over 10-fold CV. The final SVR model is compared against conventional Benson's group additivity for a set of octene isomers from the database, illustrating the advantages of the proposed ML modeling approach.

15.
Eur J Wildl Res ; 65(3): 39, 2019.
Article in English | MEDLINE | ID: mdl-32214947

ABSTRACT

Lethal interactions between members of the carnivore guild are well represented in literature. In the Iberian lynx, interspecific killing (without prey consumption) of some mesocarnivores, such as the Egyptian mongoose, genet, and red fox, has been reported. Although vaguely documented, evidence suggests feral cats fall victim to interactions with this apex predator. Here, we describe the first documented case of interspecific killing and partial consumption of a feral cat by an adult male Iberian lynx reintroduced in Southwestern Spain. Ulterior analyses demonstrated that the victim was viremic to feline leukemia virus. To prevent the dissemination of the virus and a potential outbreak in the Iberian lynx population, control measures, including the clinical evaluation of the male Iberian lynx, and intensive monitoring were implemented in order to detect intraspecific interactions. After 3 weeks, the lynx was evaluated, presented good condition and resulted negative to both ELISA and RT-PCR. Thanks to the long-term monitoring, this case could be detected and measures to prevent an outbreak could be implemented.

16.
Appl Environ Microbiol ; 84(11)2018 06 01.
Article in English | MEDLINE | ID: mdl-29625974

ABSTRACT

The Cuatro Ciénegas Basin (CCB) is located in the Chihuahuan desert in the Mexican state of Coahuila; it has been characterized as a site with high biological diversity despite its extreme oligotrophic conditions. It has the greatest number of endemic species in North America, containing abundant living microbialites (including stromatolites and microbial mats) and diverse microbial communities. With the hypothesis that this high biodiversity and the geographic structure should be reflected in the virome, the viral communities in 11 different locations of three drainage systems, Churince, La Becerra, and Pozas Rojas, and in the intestinal contents of 3 different fish species, were analyzed for both eukaryotic and prokaryotic RNA and DNA viruses using next-generation sequencing methods. Double-stranded DNA (dsDNA) virus families were the most abundant (72.5% of reads), followed by single-stranded DNA (ssDNA) viruses (2.9%) and ssRNA and dsRNA virus families (0.5%). Thirteen families had dsDNA genomes, five had ssDNA, three had dsRNA, and 16 had ssRNA. A highly diverse viral community was found, with an ample range of hosts and a strong geographical structure, with very even distributions and signals of endemicity in the phylogenetic trees from several different virus families. The majority of viruses found were bacteriophages but eukaryotic viruses were also frequent, and the large diversity of viruses related to algae were a surprise, since algae are not evident in the previously analyzed aquatic systems of this ecosystem. Animal viruses were also frequently found, showing the large diversity of aquatic animals in this oasis, where plants, protozoa, and archaea are rare.IMPORTANCE In this study, we tested whether the high biodiversity and geographic structure of CCB is reflected in its virome. CCB is an extraordinarily biodiverse oasis in the Chihuahuan desert, where a previous virome study suggested that viruses had followed the marine ancestry of the marine bacteria and, as a result of their long isolation, became endemic to the site. In this study, which includes a larger sequencing coverage and water samples from other sites within the valley, we confirmed the high virus biodiversity and uniqueness as well as the strong biogeographical diversification of the CCB. In addition, we also analyzed fish intestinal contents, finding that each fish species eats different prey and, as a result, presents different viral compositions even if they coexist in the same pond. These facts highlight the high and novel virus diversity of CCB and its "lost world" status.


Subject(s)
Bacteriophages/classification , Biodiversity , DNA Viruses/classification , Fishes/virology , Microbiota , RNA Viruses/classification , Animals , Bacteriophages/isolation & purification , DNA Viruses/isolation & purification , DNA, Bacterial/genetics , Genetic Variation , Geography , Intestines/virology , Mexico , Phylogeny , RNA Viruses/isolation & purification , RNA, Ribosomal, 16S/genetics , Water Microbiology
17.
Oecologia ; 188(2): 417-427, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29948313

ABSTRACT

Predicting multiple predator effects (MPEs) on shared prey remains one of the biggest challenges in ecology. Empirical evidence indicates that interactions among predators can alter predation rates and modify any expected linear effects on prey survival. Knowledge on predator density, identity and life-history traits is expected to help predict the behavioral mechanisms that lead to non-linear changes in predation. Yet, few studies have rigorously examined the effects of predator-predator interactions on prey survival, particularly with marine vertebrate predators. Using an additive-substitutive design, we experimentally paired reef piscivores with different hunting mode [active predator, Pseudochromis fuscus (F); ambush predators, Cephalopholis boenak (B), Epinephelus maculatus (M)] to determine how behavioral interactions modified their combined impacts on damselfish prey. Results showed that behavioral patterns among predators matched those predicted from their hunting mode. However, it was the identity of the predators what determined the strength of any positive or negative interactions, and thus the nature and magnitude of MPEs on prey survival (i.e., risk-enhancing effects: treatments BB, MM and FM; risk-reducing: BM; and linear effects: FF, FB). Given the specificity of predator-predator interactions, none of the predators were fully functionally redundant. Even when two species seemed substitutable (i.e., predators F and M), they led to vastly diverse effects when paired with additional predator species (i.e., B). We concluded that knowledge of the identity of the predator species and the behavioral interactions among them is crucial to successfully predict MPEs in natural systems.


Subject(s)
Bass , Food Chain , Animals , Ecology , Predatory Behavior
18.
Phys Chem Chem Phys ; 20(6): 4478-4489, 2018 Feb 07.
Article in English | MEDLINE | ID: mdl-29372728

ABSTRACT

Reactions of hydroxyl (OH) and hydroperoxyl (HO2) are important for governing the reactivity of combustion systems. We performed post-CCSD(T) ab initio calculations at the W3X-L//CCSD = FC/cc-pVTZ level to explore the triplet ground-state and singlet excited-state potential energy surfaces of the OH + HO2 → H2O + O2(3Σg-)/O2(1Δg) reactions. Using microcanonical and multistructural canonical transition state theories, we calculated the rate constant for the triplet and singlet channels over the temperature range 200-2500 K, represented by k(T) = 3.08 × 1012T0.07 exp(1151/RT) + 8.00 × 1012T0.32 exp(-6896/RT) and k(T) = 2.14 × 106T1.65 exp(-2180/RT) in cm3 mol-1 s-1, respectively. The branching ratios show that the yield of singlet excited oxygen is small (<0.5% below 1000 K). To ascertain the importance of singlet oxygen channel, our new kinetic information was implemented into the kinetic model for hydrogen combustion recently updated by Konnov (Combust. Flame, 2015, 162, 3755-3772). The updated kinetic model was used to perform H2O2 thermal decomposition simulations for comparison against shock tube experiments performed by Hong et al. (Proc. Combust. Inst., 2013, 34, 565-571), and to estimate flame speeds and ignition delay times in H2 mixtures. The simulation predicted a larger amount of O2(1Δg) in H2O2 decomposition than that predicted by Konnov's original model. These differences in the O2(1Δg) yield are due to the use of a higher ab initio level and a more sophisticated methodology to compute the rate constant than those used in previous studies, thereby predicting a significantly larger rate constant. No effect was observed on the rate of the H2O2 decomposition and on the flame speeds and ignition delay times of different H2-oxidizer mixtures. However, if the oxidizer is seeded with O3, small differences appear in the flame speed. Given that O2(1Δg) is much more reactive than O2(3Σg-), we do not preclude an effect of the singlet channel of the titled reaction in other combustion systems, especially in systems where excited oxygen plays an important role.

19.
Phys Chem Chem Phys ; 20(16): 10806-10814, 2018 Apr 25.
Article in English | MEDLINE | ID: mdl-29411814

ABSTRACT

We performed a theoretical study on the double hydrogen shift isomerization reaction of a six carbon atom Criegee intermediate (C6-CI), catalyzed by formic acid (HCOOH), to produce vinylhydroperoxide (VHP), C6-CI + HCOOH → VHP + HCOOH. This Criegee intermediate can serve as a surrogate for larger CIs derived from important volatile organic compounds like monoterpenes, whose reactivity is not well understood and which are difficult to handle computationally. The reactant HCOOH exerts a pronounced catalytic effect on the studied reaction by lowering the barrier height, but the kinetic enhancement is hindered by the multistructural anharmonicity. First, the rigid ring-structure adopted by the saddle point to facilitate simultaneous transfer of two atoms does not allow the formation of as many conformers as those formed by the reactant C6-CI. And second, the flexible carbon chain of C6-CI facilitates the formation of stabilizing intramolecular C-HO hydrogen bonds; this stabilizing effect is less pronounced in the saddle point structure due to its tightness and steric effects. Thus, the contribution of the reactant C6-CI conformers to the multistructural partition function is larger than that of the saddle point conformers. The resulting low multistructural anharmonicity factor partially cancels out the catalytic effect of the carboxylic acid, yielding in a moderately large rate coefficient, k(298 K) = 4.9 × 10-13 cm3 molecule-1 s-1. We show that carboxylic acids may promote the conversion of stabilized Criegee intermediates into vinylhydroperoxides in the atmosphere, which generates OH radicals and leads to secondary organic aerosols, thereby affecting the oxidative capacity of the atmosphere and ultimately the climate.

20.
J Phys Chem A ; 122(51): 9792-9805, 2018 Dec 27.
Article in English | MEDLINE | ID: mdl-30500199

ABSTRACT

Keto-enol tautomerisms are important reactions in gaseous and liquid systems with implications in different chemical environments, but their kinetics have not been widely investigated. These reactions can proceed via a unimolecular process or may be catalyzed by another molecule. This work presents a theoretical study of the HO2-catalyzed tautomerism that converts propen-2-ol into acetone at conditions relevant to combustion, atmospheric and interstellar chemistry. We performed CCSD(T)/aug-cc-pVTZ//M06-2X/cc-pVTZ ab initio and multistructural torsional variational transition state theory calculations to compute the forward and reverse rate constants. These rate constants have not been investigated previously, and modelers approximate the kinetics by comparison to analogue reactions. Two features of the potential energy surface of the studied tautomerism are highlighted. First, the HO2 radical exhibits a pronounced catalytic effect by inducing a double hydrogen atom transfer reaction with a much lower barrier than that of the unimolecular process. Second, a prereactive complex is formed with a strong OH···π hydrogen bond. The role of the studied reaction under combustion conditions has been assessed via chemical kinetic modeling of 2-butanol (a potential alternative fuel) oxidation. The HO2-assisted process was found to not be competitive with the unimolecular and HCOOH-assisted tautomerisms. The rate constants for the formation of the prereactive complex were calculated with the variable reaction coordinate transition state theory, and pressure effects were estimated with the system-specific quantum Rice-Ramsperger-Kassel theory; this allowed us to investigate the role of the complex by using the canonical unified statistical model. The formation and equilibration of the prereactive complex, which is also important at low pressures, enhances the reactivity by inducing a large tunneling effect that leads to a significant increase of the rate constants at cold and ultracold temperatures. These findings may help to understand and model the fate of complex organic molecules in the interstellar medium, and suggest an alternative route for the high energy barrier keto-enol tautomerism which otherwise is not kinetically favored at low temperatures.

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