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1.
Comparison of methods proposed for monitoring cefotaxime-resistant Escherichia coli in the water environment.
Appl Environ Microbiol
; 90(5): e0212823, 2024 May 21.
Article
in English
| MEDLINE | ID: mdl-38572968
2.
Arctic plasmidome analysis reveals distinct relationships among associated antimicrobial resistance genes and virulence genes along anthropogenic gradients.
Glob Chang Biol
; 30(5): e17293, 2024 May.
Article
in English
| MEDLINE | ID: mdl-38687495
3.
Every fifth published metagenome is not available to science.
PLoS Biol
; 18(4): e3000698, 2020 04.
Article
in English
| MEDLINE | ID: mdl-32243442
4.
Shotgun Metagenomics Reveals Impacts of Copper and Water Heater Anodes on Pathogens and Microbiomes in Hot Water Plumbing Systems.
Environ Sci Technol
; 57(36): 13612-13624, 2023 09 12.
Article
in English
| MEDLINE | ID: mdl-37643149
5.
Premise Plumbing Pipe Materials and In-Building Disinfectants Shape the Potential for Proliferation of Pathogens and Antibiotic Resistance Genes.
Environ Sci Technol
; 57(50): 21382-21394, 2023 Dec 19.
Article
in English
| MEDLINE | ID: mdl-38071676
6.
Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples.
Environ Sci Technol
; 57(26): 9713-9721, 2023 07 04.
Article
in English
| MEDLINE | ID: mdl-37310875
7.
Metagenomic tracking of antibiotic resistance genes through a pre-harvest vegetable production system: an integrated lab-, microcosm- and greenhouse-scale analysis.
Environ Microbiol
; 24(8): 3705-3721, 2022 08.
Article
in English
| MEDLINE | ID: mdl-35466491
8.
mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements.
Appl Environ Microbiol
; 88(18): e0099122, 2022 09 22.
Article
in English
| MEDLINE | ID: mdl-36036594
9.
Inhalable Antibiotic Resistome from Wastewater Treatment Plants to Urban Areas: Bacterial Hosts, Dissemination Risks, and Source Contributions.
Environ Sci Technol
; 56(11): 7040-7051, 2022 06 07.
Article
in English
| MEDLINE | ID: mdl-35038864
10.
Antimicrobial Resistance Monitoring of Water Environments: A Framework for Standardized Methods and Quality Control.
Environ Sci Technol
; 56(13): 9149-9160, 2022 07 05.
Article
in English
| MEDLINE | ID: mdl-35732277
11.
Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes.
Environ Sci Technol
; 56(21): 14982-14993, 2022 11 01.
Article
in English
| MEDLINE | ID: mdl-35759608
12.
AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata.
BMC Bioinformatics
; 22(1): 117, 2021 Mar 10.
Article
in English
| MEDLINE | ID: mdl-33691615
13.
Towards risk assessment for antibiotic resistant pathogens in recycled water: a systematic review and summary of research needs.
Environ Microbiol
; 23(12): 7355-7372, 2021 12.
Article
in English
| MEDLINE | ID: mdl-34632683
14.
Manure-Based Amendments Influence Surface-Associated Bacteria and Markers of Antibiotic Resistance on Radishes Grown in Soils with Different Textures.
Appl Environ Microbiol
; 87(10)2021 04 27.
Article
in English
| MEDLINE | ID: mdl-33712421
15.
Natural Organic Matter, Orthophosphate, pH, and Growth Phase Can Limit Copper Antimicrobial Efficacy for Legionella in Drinking Water.
Environ Sci Technol
; 55(3): 1759-1768, 2021 02 02.
Article
in English
| MEDLINE | ID: mdl-33428375
16.
Interplay of Biologically Active Carbon Filtration and Chlorine-Based Disinfection in Mitigating the Dissemination of Antibiotic Resistance Genes in Water Reuse Distribution Systems.
Environ Sci Technol
; 55(12): 8329-8340, 2021 06 15.
Article
in English
| MEDLINE | ID: mdl-34080846
17.
Data Analytics for Environmental Science and Engineering Research.
Environ Sci Technol
; 55(16): 10895-10907, 2021 08 17.
Article
in English
| MEDLINE | ID: mdl-34338518
18.
Mapping the Terrain for Pathogen Persistence and Proliferation in Non-potable Reuse Distribution Systems: Interactive Effects of Biofiltration, Disinfection, and Water Age.
Environ Sci Technol
; 55(18): 12561-12573, 2021 09 21.
Article
in English
| MEDLINE | ID: mdl-34448580
19.
Source-to-Tap Assessment of Microbiological Water Quality in Small Rural Drinking Water Systems in Puerto Rico Six Months After Hurricane Maria.
Environ Sci Technol
; 55(6): 3775-3785, 2021 03 16.
Article
in English
| MEDLINE | ID: mdl-33645970
20.
A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent Infection in Children.
Antimicrob Agents Chemother
; 64(4)2020 03 24.
Article
in English
| MEDLINE | ID: mdl-32015040