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1.
Int J Syst Evol Microbiol ; 67(8): 2903-2909, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28820096

ABSTRACT

A Gram-stain-positive, facultatively anaerobic, and catalase- and oxidase-negative bacterial strain designated MOZM2T, having 98.4 % 16S rRNA gene sequence identity with Lactobacillus reuteri DSM 20016T, was isolated from a swab of the oral cavity of a home-bred guinea pig. Comparative analyses based on the hsp60, pheS and tuf genes confirmed L. reuteri as its closest relative species, with calculated sequence similarities of 92.8, 88.8 and 96.9 %, respectively. DNA-DNA hybridisation revealed a 42 % degree of genetic similarity between the novel strain and L. reuteri DSM 20016T. Strain MOZM2T degrades carbohydrates via the 6-phosphogluconate/phosphoketolase pathway, evidenced by its production of gas from glucose and the end products of hexose catabolism. Comparative analysis of the cellular fatty acid profiles determined significant differences between MOZM2T and L. reuteri DSM 20016T in their proportions of C8 : 0, C14 : 1, C17 : 0, C18 : 2ω6t and C20 : 0 fatty acids. Results of genotypic analyses also demonstrated differences between these two strains. They also differed in DNA G+C content, and some biochemical and physiological characteristics. We therefore believe that the examined bacterial isolate should be considered as a new taxon within the group of obligately heterofermentative lactobacilli. The species name Lactobacillus caviae sp. nov. is proposed, of which the type strain is MOZM2T (=CCM 8609T=DSM 100239T=LMG 28780T).


Subject(s)
Guinea Pigs/microbiology , Lactobacillus/classification , Mouth/microbiology , Phylogeny , Animals , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Fermentation , Genes, Bacterial , Lactobacillus/genetics , Lactobacillus/isolation & purification , Nucleic Acid Hybridization , Peptidoglycan/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
2.
Int J Syst Evol Microbiol ; 67(8): 2842-2847, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28820091

ABSTRACT

A slightly irregular, short rod-shaped bacterial strain, MOZIV/2T, showing activity of fructose 6-phosphate phosphoketolase was isolated from the oral cavity of a home-bred guinea-pig. Based on comparative 16S rRNA gene sequence analyses, its closest relatives were Alloscardovia omnicolens DSM 21503T and Alloscardovia criceti DSM 17774T with 96.0 and 95.6 % pairwise similarities, respectively. Completeness of the compared sequences was 97.3 and 96.9 %, respectively. Growth was found only under anaerobic conditions. Activities of α- and ß-gluco(galacto)sidases were detected in strain MOZIV/2T, which is characteristic for almost all members of the family Bifidobacteriaceae. Sequencing of other molecular markers (fusA, gyrB and xfp) revealed low gene sequence similarities to A. omnicolens DSM 21503T ranging from 72.7 to 87.5 %. Strain MOZIV/2T differed from other species within the genus Alloscardovia by the presence of C18 : 1ω9t. In addition, much higher proportions of C8 : 0, C11 : 0, C12 : 0, C14 : 1, C16 : 1 and C17 : 0 fatty acids were found in cells of strain MOZIV/2T. The peptidoglycan structure was of type A4α [l-Lys(l-Orn)-d-Asp], which is consistent with its classification within the genus Alloscardovia. The DNA G+C content (45.8 mol%) was lower than those found in other alloscardovia. Phylogenetic studies and evaluation of phenotypic characteristics including the results of biochemical, physiological and chemotaxonomic analyses confirmed the novel species status for strain MOZIV/2T, for which the name Alloscardovia venturai sp. nov. is proposed. The type strain is MOZIV/2T (=DSM 100237T=CCM 8604T=LMG 28781T).


Subject(s)
Actinobacteria/classification , Aldehyde-Lyases/metabolism , Guinea Pigs/microbiology , Mouth/microbiology , Phylogeny , Actinobacteria/genetics , Actinobacteria/isolation & purification , Animals , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Fructose , Genes, Bacterial , Peptidoglycan/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
3.
Curr Microbiol ; 74(11): 1324-1331, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28756573

ABSTRACT

Occurrence of bifidobacteria, known as health-promoting probiotic microorganisms, in the digestive tract of wild pigs (Sus scrofa) has not been examined yet. One hundred forty-nine fructose-6-phosphate phosphoketolase positive bacterial strains were isolated from colonic content of twenty-two individuals of wild pigs originated from four localities in the Czechia. Based on PCR-DGGE technique targeting the variable V3 region of the 16S rRNA genes, strains were initially differentiated into four groups represented by: (i) probably a new Bifidobacterium species (89 strains), (ii) B. boum/B. thermophilum/B. thermacidophilum subsp. porcinum/B. thermacidophilum subsp. thermacidophilum (sub)species (49 strains), (iii) Pseudoscardovia suis (7 strains), and (iv) B. pseudolongum subsp. globosum/B. pseudolongum subsp. pseudolongum (4 strains), respectively. Given the fact that DGGE technique did not allow to differentiate the representatives of thermophilic bifidobacteria and B. pseudolongum subspecies, strains were further classified by the 16S rRNA and thrS gene sequences. Primers targeting the variable regions of the latter gene were designed to be applicable in identification and phylogeny of Bifidobacteriaceae family. The 16S rRNA-derived phylogenetic study classified members of the first group into five subgroups in a separated cluster of thermophilic bifidobacteria. Comparable results were obtained by the thrS-derived phylogenetic analysis. Remarkably, variability among thrS sequences was higher compared with 16S rRNA gene sequences. Overall, molecular genetic techniques application allowed to identify a new Bifidobacterium phylotype which is predominant in the digestive tract of examined wild pigs.


Subject(s)
Animals, Wild , Bifidobacterium/classification , Bifidobacterium/genetics , Molecular Typing , Sus scrofa/microbiology , Animals , Bifidobacterium/chemistry , Bifidobacterium/isolation & purification , Gastrointestinal Tract/microbiology , Genes, Bacterial , Molecular Typing/methods , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Swine
4.
Anaerobe ; 44: 40-47, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28108391

ABSTRACT

Strains of Bifidobacterium animalis subsp. lactis are well-known health-promoting probiotics used commercially. B. animalis subsp. lactis has been isolated from different sources, and little is known about animal isolates of this taxon. The aim of this study was to examine the genotypic and phenotypic diversity between B. animalis subsp. lactis strains different animal hosts including Cameroon sheep, Barbary sheep, okapi, mouflon, German shepard and to compare to BB12, food isolates and the collection strain DSM 10140. Ten strains of B. animalis subsp. lactis from different sources were characterised by phenotyping, fingerprinting, and multilocus sequence typing (MLST). Regardless of origin, MLST and phylogenetic analyses revealed a close relationship between strains of B. animalis subsp. lactis with commercial and animal origin with the exception of isolates from ovine cheese, mouflon and German Shepard dog. Moreover, isolates from dog and mouflon showed significant differences in fermentation profiles and peptide mass fingerprints (MALDI-TOF). Results indicated phenotypic and genotypic diversity among strains of B. animalis subsp. lactis.


Subject(s)
Bifidobacterium animalis/classification , Bifidobacterium animalis/genetics , Food Microbiology , Genetic Variation , Genotype , Mammals/microbiology , Phenotype , Animals , Bacterial Typing Techniques , Bifidobacterium animalis/chemistry , Bifidobacterium animalis/isolation & purification , Bifidobacterium animalis/physiology , Molecular Typing , Phylogeny , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
5.
Pharm Biol ; 54(11): 2369-2376, 2016 Nov.
Article in English | MEDLINE | ID: mdl-26984176

ABSTRACT

Context Some mushrooms of the order Polyporales are known for their immunomodulatory actions. Objective The objective of this study is to evaluate the in vitro phagocytic and cytotoxic effects of extracts from polyporales native to Central Europe. Materials and methods The effects of ethanol extracts from 27 polypore species on opsonized zymosan-induced phagocytosis of isolated human neutrophils were tested by a chemiluminescence method. Colon epithelial cell lines, Caco-2 and HT-29, were used for cytotoxicity assays, and extracts were chemically characterized in terms of total phenolic and ß-glucan content. Results We observed phagocytosis or respiratory burst enhancing activity in 17 extracts, of which five species, namely Aurantiporus fissilis (Berk. & M.A. Curtis) H. Jahn ex Ryvarden, Trametes gibbosa (Pers.) Fr., Piptoporus betulinus (Bull.) P. Karst, Neolentinus lepideus (Fr.) Redhead & Ginns, Polyporus squamosus (Huds.) Fr., significantly increased phagocytosis in granulocytes by 205, 181, 158, 155 and 141%, respectively. The ß-glucan content of the three most potent extracts was 58, 42 and 74 mg/g, respectively, and the polyphenol content was 155.6, 133.5 and 155.2 µmol of gallic acid equivalent/g, respectively. Some extracts showed cytotoxic activity, with higher cytotoxicity in Caco-2 than in HT-29 cells. Pycnoporus cinnabarinus (Jacq.) P. Karst. extract was cytotoxic to both cell lines, with IC50 values of 81 and 31 µg/mL, respectively. Discussion and conclusion The most promising extracts were from N. lepideus and Polyporus squamosus, which are edible species and may be considered safe. Our findings support their use as culinary preparations or food supplements for various immunological gut disorders.


Subject(s)
Antineoplastic Agents/pharmacology , Immunologic Factors/pharmacology , Polyporales , Caco-2 Cells , Cell Survival/drug effects , HT29 Cells , Humans , Phagocytosis/drug effects , Phenols/analysis , Polyporales/chemistry , Polyporales/classification , beta-Glucans/analysis
6.
Anaerobe ; 34: 27-33, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25865525

ABSTRACT

Various culture media have been proposed for the isolation and selective enumeration of bifidobacteria. Mupirocin is widely used as a selective factor along with glacial acetic acid. TOS (transgalactosylated oligosaccharides) medium supplemented with mupirocin is recommended by the International Dairy Federation for the detection of bifidobacteria in fermented milk products. Mupirocin media with acetic acid are also reliable for intestinal samples in which bifidobacteria predominate. However, for complex samples containing more diverse microbiota, the selectivity of mupirocin media is limited. Resistance to mupirocin has been demonstrated by many anaerobic bacteria, especially clostridia. The objective was to identify an antibiotic that inhibits the growth of clostridia and allows the growth of bifidobacteria, and to use the identified substance to develop a selective cultivation medium for bifidobacteria. The susceptibility of bifidobacteria and clostridia to 12 antibiotics was tested on agar using the disk diffusion method. Only norfloxacin inhibited the growth of clostridia and did not affect the growth of bifidobacteria. Using both pure cultures and faecal samples from infants, adults, calves, lambs, and piglets, the optimal concentration of norfloxacin in solid cultivation media was determined to be 200 mg/L. Our results showed that solid medium containing norfloxacin (200 mg/L) in combination with mupirocin (100 mg/L) and glacial acetic acid (1 mL/L) is suitable for the enumeration and isolation of bifidobacteria from faecal samples of different origins.


Subject(s)
Acetic Acid/metabolism , Bacteriological Techniques/methods , Bifidobacterium/growth & development , Bifidobacterium/isolation & purification , Culture Media/chemistry , Mupirocin/metabolism , Norfloxacin/metabolism , Adult , Animals , Cattle , Humans , Infant , Microbial Sensitivity Tests , Middle Aged , Ships , Swine
7.
Anaerobe ; 22: 134-6, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23770542

ABSTRACT

8-Hydroxyquinoline (8HQ) inhibited Clostridium tertium, Clostridium clostridioforme, Clostridium difficile and Clostridium perfringens in vitro with MICs of 8, 16, 32 and 32 µg/mL, respectively. In contrast, MICs of most bifidobacteria (84%) were 512 µg/mL or higher. Thus, 8HQ could be used as anti-clostridial agent or in selective media for bifidobacteria isolation.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bifidobacterium/drug effects , Clostridium/drug effects , Feces/microbiology , Oxyquinoline/pharmacology , Bifidobacterium/isolation & purification , Clostridium/isolation & purification , Humans , Infant , Microbial Sensitivity Tests
8.
Anaerobe ; 18(1): 166-8, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21986032

ABSTRACT

In our previous experiment, the ten calves originated bifidobacterial strains were administered to calves and re-isolated. Fingerprinting techniques used in this study enabled us to distinguish the surviving and non-surviving strains. Only the species Bifidobacterium animalis ssp. animalis and Bifidobacterium longum ssp. suis were found to survive in the intestine.


Subject(s)
Bifidobacterium/classification , Cattle/microbiology , Probiotics , Animals , Bacterial Proteins/genetics , Bifidobacterium/genetics , Bifidobacterium/isolation & purification , Chaperonin 60/genetics , Feces/microbiology , Intestines/microbiology , Phylogeny , RNA, Ribosomal, 16S
9.
Anaerobe ; 17(5): 223-5, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21839845

ABSTRACT

For healthy infants, which were born normally and fully breastfed, the dominant component of the intestinal microflora are bifidobacteria. However, infants born by caesarean section possess clostridia as a dominant intestinal bacterial group. The aim of the present study was to determine whether bifidobacteria and clostridia are able to grow on human milk oligosaccharides (HMOs) and other carbon sources - lactose, cow milk (CM) and human milk (HM). Both bifidobacteria and clostridia grew on lactose and in CM. Bifidobacteria grew in HM and on HMOs. In contrast, 3 out of 5 strains of clostridia were not able to grow in HM. No clostridial strain was able to utilise HMOs. While both bifidobacterial strains were resistant to lysozyme, 4 out of 5 strains of clostridia were lysozyme-susceptible. It seems that HMOs together with lysozyme may act as prebiotic-bifidogenic compounds inhibiting intestinal clostridia.


Subject(s)
Bifidobacterium/growth & development , Clostridium butyricum/growth & development , Milk, Human/chemistry , Milk/chemistry , Oligosaccharides/metabolism , Animals , Bacterial Load , Bifidobacterium/classification , Bifidobacterium/isolation & purification , Bifidobacterium/metabolism , Clostridium butyricum/isolation & purification , Clostridium butyricum/metabolism , Culture Media , Feces/microbiology , Humans , Lactose/metabolism
11.
Anaerobe ; 16(2): 165-70, 2010 Apr.
Article in English | MEDLINE | ID: mdl-19651224

ABSTRACT

Bifidobacteria and other bacterial groups (lactobacilli, facultative anaerobes, anaerobes) from the digestive tract of three bumblebee species (Bombus lucorum (34 samples), Bombus pascuorum (18 samples) and Bombus lapidarius (9 samples)) were enumerated and characterised. Counts of facultative anaerobic bacteria and lactobacilli (5.41+/-2.92 and 2.69+/-3.02 log CFU/g of digestive tract content) were lower than those of anaerobes (7.66+/-0.86 log CFU/g). Counts of bifidobacteria were determined using two selective media: MTPY (Modified Trypticase Phytone Yeast extract agar) and a new medium with pollen extract. There was no significant difference between the counts of bifidobacteria from both media, 5.00+/-2.92 log CFU/g on MTPY and 5.00+/-2.87 on the pollen medium. Subsequently, 187 bacterial strains of the family Bifidobacteriaceae (fructose-6-phosphate phosphoketolase-positive) were isolated from three different localities and from all three species of bumblebees. Bifidobacteria were found in 42 out of 61 specimens (69%). Twenty-three (38%) specimens had counts of bifidobacteria higher than 7.0 log CFU/g. Bifidobacteria represented the dominant group of anaerobes (>70% of total anaerobes), i.e., the principal group of bacteria in the bumblebee digestive tract, in only fourteen specimens (23% of total). For the first time, bifidobacteria were isolated from the digestive tract of bumblebees. In addition, we suggest, on the basis of biochemical tests (API 50 CHL and RAPID ID 32) and genetic methods (PCR and DGGE), that these bacteria may represent new species within the family of Bifidobacteriaceae.


Subject(s)
Actinobacteria/classification , Actinobacteria/isolation & purification , Bees/microbiology , Aldehyde-Lyases/metabolism , Animals , Bacterial Proteins/metabolism , Bacterial Typing Techniques , Bacteriological Techniques/methods , Cluster Analysis , Colony Count, Microbial , Culture Media/chemistry , DNA Fingerprinting , DNA, Bacterial/genetics , Electrophoresis, Polyacrylamide Gel , Gastrointestinal Tract/microbiology , Nucleic Acid Denaturation , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
12.
J Sci Food Agric ; 90(14): 2352-7, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20661929

ABSTRACT

BACKGROUND: The meat alternatives market offers a wide range of products resembling meat in taste, flavour or texture but based on vegetable protein sources. These high protein-low purine foods may find application in a low purine or purine-free diet, which is sometimes suggested for subjects with increased serum urate levels, i.e. hyperuricaemia. RESULTS: We determined purine content (uric acid, adenine, guanine, hypoxanthine, xanthine) in 39 commercially available meat substitutes and evaluated them in relation to their protein content. Some of the products contained a comparable sum of adenine and hypoxanthine per protein as meat. Analysis of variance showed an influence of protein source used. Mycoprotein-based products had significantly higher contents (2264 mg kg(-1)) of adenine and hypoxanthine per kg of 100% protein than soybean-based products (1648 mg kg(-1)) or mixtures consisting of soybean protein and wheat protein (1239 mg kg(-1)). CONCLUSION: Protein-rich vegetable-based meat substitutes might be generally accepted as meat alternatives for individuals on special diets. The type of protein used to manufacture these products determines the total content of purines, which is relatively higher in the case of mycoprotein or soybean protein, while appearing lower in wheat protein and egg white-based products. These are therefore more suitable for dietary considerations in a low-purine diet for hyperuricaemic subjects.


Subject(s)
Diet, Vegetarian , Dietary Proteins/analysis , Plant Proteins/chemistry , Purines/analysis , Analysis of Variance , Fungi/chemistry , Meat , Glycine max/chemistry , Triticum/chemistry
13.
Anaerobe ; 14(4): 205-8, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18583163

ABSTRACT

Our aim was to isolate bifidobacteria and clostridia from infant faeces and to test the growth of bifidobacteria and clostridia on prebiotic oligosaccharides. Seventy breast-fed infants aged between 3 and 253 days were tested for the presence of bifidobacteria and clostridia in their faeces. Ten strains of clostridia and 10 strains of bifidobacteria were isolated from infant faecal samples. Four strains of bifidobacteria originated from culture collections and 1 strain from fermented milk product were also tested. Subsequently, bacterial isolates were tested for their growth on prebiotic oligosaccharides in, in vitro conditions. Forty-six infants exhibited high numbers of bifidobacteria (usually higher than 9 logCFU/g) in their faeces. There were undetectable amounts of bifidobacteria in faecal samples in 24 of the studied infants (34%), these babies on the other hand possessed significant amounts of clostridia in their faecal flora. Both bifidobacteria and clostridia utilized all substrates tested. Bifidobacteria grew significantly better in the medium with galactooligosaccharides. Higher growth of clostridia was observed on raffinose and lactulose. Conversely, bifidobacteria grew slightly better in the medium with stachyose, inulin, Raftilose P85 and P95. However, these differences were not significant. Our results suggest that commercially available prebiotics support the growth of infant faecal clostridia. It is therefore questionable if bifidobacteria-deficient infants should be supplemented with prebiotics.


Subject(s)
Bifidobacterium/growth & development , Bifidobacterium/metabolism , Clostridium/growth & development , Clostridium/metabolism , Cultured Milk Products/microbiology , Feces/microbiology , Oligosaccharides/metabolism , Bifidobacterium/isolation & purification , Clostridium/isolation & purification , Colony Count, Microbial , Female , Humans , Infant , Infant, Newborn , Male
14.
Folia Microbiol (Praha) ; 63(3): 391-399, 2018 May.
Article in English | MEDLINE | ID: mdl-29270873

ABSTRACT

Gram-stain-positive, catalase and oxidase-negative and short rod-shaped bacterium C10 with occasional branching was isolated under strictly anaerobic conditions from the rumen fluid of a red deer (Cervus elaphus) in the course of study attempting to uncover new xylanolytic and cellulolytic rumen bacteria inhabiting the digestive tract of wild ruminants in the Czech Republic. The anaerobic M10 medium containing bovine rumen fluid and carboxymethylcellulose as a defined source of organic carbon was used in the process of bacterial isolation. The 16S rRNA gene similarity revealed recently characterized new species Actinomyces succiniciruminis Am4T (GenBank accession number of the gene retrieved from the complete genome: LK995506) and Actinomyces glycerinitolerans G10T (GenBank accession number from the complete genome: NZFQTT01000017) as the closest relatives (99.7 and 99.6% gene pairwise identity, respectively), followed by the Actinomyces ruminicola DSM 27982T (97.2%, in all compared fragment of 41468 pb). Due to the taxonomic affinity of the examined strain to both species A. succiniciruminis and A. glycerinitolerans, its taxonomic status towards these species was evaluated using variable regions of rpsA (length of 519 bp) and rplB (597 bp) gene sequences amplified based on specific primers designed so as to be applicable in differentiation, classification, and phylogeny of Actinomyces species/strains. Comparative analyses using rpsA and rplB showed 98.5 and 97.9% similarities of C10 to A. succiniciruminis, respectively, and 97.5 and 97.6% similarities to A. glycerinitolerans, respectively. Thus, gene identities revealed that the evaluated isolate C10 (=DSM 100236 = LMG 28777) is a little more related to the species A. succiniciruminis isolated from the rumen of a Holstein-Friesian cow than A. glycerinitolerans. Phylogenetic analyses confirmed affinity of strain C10 to both recently characterized species. Unfortunately, they did not allow the bacterial strain to be classified into a particular species. Phenotypic characterization suggested similar conclusions. This brief contribution is aimed at classification and detailed phenotypic characterization of bacterial strain C10 isolated from the rumen of a wild red deer exhibiting, from the point of view of Actinomyces species, noteworthy cellulolytic and xylanolytic activities.


Subject(s)
Actinomyces/isolation & purification , Actinomyces/metabolism , Deer/microbiology , Rumen/microbiology , Actinomyces/classification , Actinomyces/genetics , Animals , Base Composition , Cellulose/metabolism , DNA, Bacterial/genetics , Fatty Acids/analysis , Genes, Bacterial/genetics , Peptidoglycan/analysis , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Xylans/metabolism
15.
Acta Microbiol Immunol Hung ; 64(4): 415-422, 2017 Dec 01.
Article in English | MEDLINE | ID: mdl-28859498

ABSTRACT

Adhesion of gut bacteria to the intestinal epithelium is the first step in their colonization of the neonatal immature gut. Bacterial colonization of the infant gut is influenced by several factors, of which the most important are the mode of delivery and breast-feeding. Breast-fed infants ingest several grams of human milk oligosaccharides (HMOs) per day, which can become receptor decoys for intestinal bacteria. The most abundant intestinal bacteria in vaginally delivered infants are bifidobacteria, whereas infants born by cesarean section are colonized by clostridia. The influence of HMOs on the adhesion of five strains of intestinal bacteria (three bifidobacterial strains and two clostridial strains) to mucus-secreting and non-mucus-secreting human epithelial cells was investigated. Bifidobacterium bifidum 1 and Bifidobacterium longum displayed almost the same level of adhesion in the presence and absence of HMOs. By contrast, adhesion of Clostridium butyricum 1 and 2 decreased from 14.41% to 6.72% and from 41.54% to 30.91%, respectively, in the presence of HMOs. The results of this study indicate that HMOs affect bacterial adhesion and are an important factor influencing bacterial colonization of the gut. Adhesion of the tested bacteria correlates with their ability to autoaggregate.


Subject(s)
Bacterial Adhesion , Bifidobacterium/physiology , Clostridium/physiology , Milk, Human/chemistry , Oligosaccharides/metabolism , Adult , Bifidobacterium/genetics , Bifidobacterium/isolation & purification , Cell Line , Clostridium/genetics , Clostridium/isolation & purification , Feces/microbiology , Female , Gastrointestinal Microbiome , Humans , Infant , Intestinal Mucosa/metabolism , Intestines/microbiology , Male
16.
FEMS Microbiol Lett ; 258(1): 25-8, 2006 May.
Article in English | MEDLINE | ID: mdl-16630250

ABSTRACT

Sixty-four breast-fed infants and 23 calves were investigated for bacteria and enzymatic activity in their faecal samples. The bacteria were measured using cultivation and fluorescence in situ hybridization. Enzymatic activity was also examined. Forty-seven (64%) infants and all the calves had high numbers of bifidobacteria (usually >9 log CFU g-1) in their faeces, but 17 infants (36%) did not have a detectable amount of the bacteria. Most of the bifidobacteria-negative infants had significant quantities of clostridia in their faecal flora. While the infants did not have significantly higher counts of bifidobacteria, the samples from calves contained significantly (P<0.05) more coliform bacteria and lactobacilli. There were also significant differences in their enzymatic activities. Bifidobacteria-positive samples had a greater alpha-glucosidase activity, while bifidobacteria-negative samples had a lower activity of alpha-galactosidase, and calf samples had the highest beta-glucuronidase activity. A significant increase in bifidobacteria in calf faeces between days 3 and 7 was accompanied by a decrease in Escherichia coli. Our results show that the faecal flora of calves is similar to that of infants with regard to the occurrence of bifidobacteria as a dominant bacterial group.


Subject(s)
Bifidobacterium/isolation & purification , Colony Count, Microbial , Feces/enzymology , Feces/microbiology , Animals , Cattle , Female , Humans , In Situ Hybridization, Fluorescence , Male , alpha-Galactosidase/metabolism , alpha-Glucosidases/metabolism , beta-Galactosidase/metabolism
17.
J Microbiol Methods ; 109: 106-9, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25542994

ABSTRACT

An international standard already exists for the selective enumeration of bifidobacteria in milk products. This standard uses Transgalactosylated oligosaccharides (TOS) propionate agar supplemented with mupirocin. However, no such standard method has been described for the selective enumeration of bifidobacteria in probiotic supplements, where the presence of bifidobacteria is much more variable than in milk products. Therefore, we enumerated bifidobacteria by colony count technique in 13 probiotic supplements using three media supplemented with mupirocin (Mup; 100mg/l): TOS, Bifidobacteria selective medium (BSM) and modified Wilkins-Chalgren anaerobe agar with soya peptone (WSP). Moreover, the potential growth of bifidobacterial strains often used in probiotic products was performed in these media. All 13 products contained members of the genus Bifidobacterium, and tested mupirocin media were found to be fully selective for bifidobacteria. However, the type strain Bifidobacterium bifidum DSM 20456 and collection strain B. bifidum DSM 20239 showed statistically significant lower counts on TOS Mup media, compared to BSM Mup and WSP Mup media. Therefore, the TOS Mup medium recommended by the ISO standard cannot be regarded as a fully selective and suitable medium for the genus Bifidobacterium. In contrast, the BSM Mup and WSP Mup media supported the growth of all bifidobacterial species.


Subject(s)
Anti-Bacterial Agents/metabolism , Bacterial Load/methods , Bifidobacterium/growth & development , Colony Count, Microbial/methods , Culture Media/chemistry , Mupirocin/metabolism , Probiotics/analysis , Bifidobacterium/drug effects
18.
J Med Food ; 18(6): 685-9, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25525835

ABSTRACT

Prebiotics are used for stimulating the growth of beneficial microorganisms in the gut. However, it is very difficult to find a suitable prebiotic mixture that exclusively supports the growth of beneficial microbes such as bifidobacteria and lactobacilli. We tested the effects of a prebiotic mixture in vitro by incubating it with fecal samples and in vivo by administration of the prebiotic supplement to healthy adult volunteers, followed by analysis of their fecal microbiota. The effect of the oligosaccharides on bacterial metabolism was studied by analyzing short-chain fatty acid (SCFA) production in vitro and the SCFA pattern for the stool samples of volunteers. In the in vitro test, a higher proportion of bifidobacteria (25.77%) was seen in the total bacterial population after cultivation on a prebiotic mixture than on the control medium (7.94%). The gram-negative anaerobe count significantly decreased from 8.70 to 6.40 log CFU/g (from 35.21% to 0.60%) and the Escherichia coli count decreased from 7.41 to 6.27 log CFU/g (from 1.78% to 0.44%). Administration of a prebiotic mixture in vivo (9 g of galactooligosaccharides [GOS]+1 g of maltodextrins; daily for 5 days) significantly increased the fecal bifidobacterial count from 9.45 to 9.83 log CFU/g (from 40.80% to 53.85% of total bacteria) and reduced the E. coli count from 7.23 to 6.28 log CFU/g (from 55.35% to 45.06% of total bacteria). The mixture comprising GOS and maltodextrins thus exhibited bifidogenic properties, promoting the performance of bifidobacteria by boosting their growth and inhibiting the growth of undesirable bacteria.


Subject(s)
Bifidobacterium/drug effects , Escherichia coli/drug effects , Gastrointestinal Microbiome/drug effects , Intestines/drug effects , Oligosaccharides/pharmacology , Polysaccharides/pharmacology , Prebiotics , Adult , Bifidobacterium/growth & development , Bifidobacterium/metabolism , Drug Combinations , Escherichia coli/growth & development , Escherichia coli/metabolism , Fatty Acids, Volatile/metabolism , Feces/microbiology , Female , Galactose/pharmacology , Humans , Intestinal Mucosa/metabolism , Intestines/microbiology , Male , Middle Aged
19.
Carbohydr Res ; 411: 15-21, 2015 Jun 26.
Article in English | MEDLINE | ID: mdl-25950401

ABSTRACT

The polysaccharide inulin has great importance in the food and pharmaceutical industries. The degree of polymerization (DP) of inulin influences important properties, such as, solubility, thermal stability, sweetness power and prebiotic activity. Molecules with a high degree of polymerization are obtained through physical techniques for enrichment of the inulin chains because they are not commonly obtained from plants extract. Gas chromatography/Mass Spectrometry and (1)H Nuclear Magnetic Resonance analysis showed that inulin from Stevia rebaudiana roots has a degree of polymerization (DPn 28) higher than the value of DPn 12-15 for inulins from other plant species. Furthermore, the methodology of freeze/thaw to enrich the chains allowed us to increase the DP, similarly to other methodologies used for the enrichment of inulin chains. The prebiotic assays confirm that inulin from S. rebaudiana has a high DP. The combined use of these molecules with low degree of polymerization fructans seems to be advantageous to prolong the prebiotic effect in the colon. Our results suggest that S. rebaudiana roots are a promising source of high degree polymerization inulins.


Subject(s)
Inulin/chemistry , Stevia/chemistry , Bifidobacterium/growth & development , Bifidobacterium/metabolism , Culture Media , Fermentation , Inulin/isolation & purification , Lactobacillus/growth & development , Lactobacillus/metabolism , Polymerization , Prebiotics
20.
PLoS One ; 10(3): e0118707, 2015.
Article in English | MEDLINE | ID: mdl-25768309

ABSTRACT

Social honey bees, Apis mellifera, host a set of distinct microbiota, which is similar across the continents and various honey bee species. Some of these bacteria, such as lactobacilli, have been linked to immunity and defence against pathogens. Pathogen defence is crucial, particularly in larval stages, as many pathogens affect the brood. However, information on larval microbiota is conflicting. Seven developmental stages and drones were sampled from 3 colonies at each of the 4 geographic locations of A. mellifera carnica, and the samples were maintained separately for analysis. We analysed the variation and abundance of important bacterial groups and taxa in the collected bees. Major bacterial groups were evaluated over the entire life of honey bee individuals, where digestive tracts of same aged bees were sampled in the course of time. The results showed that the microbial tract of 6-day-old 5th instar larvae were nearly equally rich in total microbial counts per total digestive tract weight as foraging bees, showing a high percentage of various lactobacilli (Firmicutes) and Gilliamella apicola (Gammaproteobacteria 1). However, during pupation, microbial counts were significantly reduced but recovered quickly by 6 days post-emergence. Between emergence and day 6, imago reached the highest counts of Firmicutes and Gammaproteobacteria, which then gradually declined with bee age. Redundancy analysis conducted using denaturing gradient gel electrophoresis identified bacterial species that were characteristic of each developmental stage. The results suggest that 3-day 4th instar larvae contain low microbial counts that increase 2-fold by day 6 and then decrease during pupation. Microbial succession of the imago begins soon after emergence. We found that bacterial counts do not show only yearly cycles within a colony, but vary on the individual level. Sampling and pooling adult bees or 6th day larvae may lead to high errors and variability, as both of these stages may be undergoing dynamic succession.


Subject(s)
Bacteria/genetics , Bees/microbiology , Gastrointestinal Microbiome , Animals , Bacteria/classification , Bacteria/isolation & purification , Bees/embryology , Bees/growth & development , DNA, Bacterial/genetics , Denaturing Gradient Gel Electrophoresis , Ecosystem , Gastrointestinal Tract/microbiology , Lactobacillaceae/genetics , RNA, Ribosomal, 16S/genetics , Real-Time Polymerase Chain Reaction
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