Automated Flood Depth Estimates from Online Traffic Sign Images: Explorations of a Convolutional Neural Network-Based Method.

Flood depth monitoring is crucial for flood warning systems and damage control, especially in the event of an urban flood. Existing gauge station data and remote sensing data still has limited spatial and temporal resolution and coverage. Therefore, to expand flood depth data source taking use of online image resources in an efficient manner, an automated, low-cost, and real-time working frame called FloodMask was developed to obtain flood depth from online images containing flooded traffic signs. The method was built on the deep learning framework of Mask R-CNN (regional convolutional neural network), trained by collected and manually annotated traffic sign images. Following further the proposed image processing frame, flood depth data were retrieved more efficiently than manual estimations. As the main results, the flood depth estimates from images (without any mirror reflection and other inference problems) have an average error of 0.11 m, when compared to human visual inspection measurements. This developed method can be further coupled with street CCTV cameras, social media photos, and on-board vehicle cameras to facilitate the development of a smart city with a prompt and efficient flood monitoring system. In future studies, distortion and mirror reflection should be tackled properly to increase the quality of the flood depth estimates.

Nitrogen Emissions-Based Assessment of Anthropogenic Regional Ecological Risk: An Example of Taiwanese Urbanization, 1990-2015.

This study proposes a framework for evaluating anthropogenic nitrogen emissions and local vulnerability in order to assess regional ecological risk of human activity during a stable urbanization process. Taiwan, an isolated island with a unique environment, intensive agriculture, concentrated industries, and stable urbanization, was an ideal location for testing this framework. Local vulnerability is influenced by social characteristics, economic development, environmental protection, and other indicators related to these. Within the context of urbanization, therefore, and using official statistical data, human metabolism, agricultural and industrial production, and transportation were evaluated. The results indicate that the rate of anthropogenic nitrogen emissions decreased as the process of urbanization in Taiwan stabilized. While nitrogen emissions from agricultural production, household and industrial wastewater gradually decreased due to a reduction in the area of arable farmland, a reduction in the use of fertilizers and increased sewage treatment, nitrogen emissions from transportation increased due to higher energy consumption from vehicle use. Taiwan exhibited a higher degree of regional vulnerability in 1998 because motor vehicle density increased significantly, while rates of per capita green area and resource recovery remained relatively low. The study found that if Taiwan maintains its current conditions with respect to standard of living, agriculture, industry, and transportation, nitrogen emissions from human metabolism and agricultural and industrial production will not increase regional ecological risk, while nitrogen emissions from transportation will likely increase this risk. Therefore, this paper suggests that future environmental planning in Taiwan should prioritize low-emissions sustainable transportation.

THBS2 is a biomarker for AJCC stages and a strong prognostic indicator in colorectal cancer.

PURPOSE: To investigate the expression of thrombospondin 2 (THBS2) in colorectal cancer (CRC) and its relationship with clinicopathological features and prognosis. METHODS: THBS2 expression was evaluated with tissue microarrays (TMAs) immunohistochemistry (IHC) staining in 100 CRC samples. RESULTS: High THBS2 expression was found in 73 patients (45 male and 28 female). THBS2 expression was significantly correlated to TNM stages (p=4.1×10-5), T classification (p=0.005), lymph node metastasis (p=3×10-4) and AJCC stages (p=0), while no significant association was found in gender, age, distant metastasis or tumor size. In both univariate and multivariate analyses, THBS2 showed statistically prognostic significance [p<0.001, HR (hazard ratio) = 0.237, 95% CI (0.101-0.557) and p<0.001, HR=0.158, 95% CI (0.062-0.401)]. Kaplan-Meier survival analysis further confirmed that THBS2 expression was significantly correlated with clinical outcomes (p<0.001). CONCLUSIONS: All the results indicated THBS2 expression might become a prognostic marker for CRC.

A Wearable Asynchronous Brain-Computer Interface Based on EEG-EOG Signals With Fewer Channels.

OBJECTIVE: Brain-computer interfaces (BCIs) have tremendous application potential in communication, mechatronic control and rehabilitation. However, existing BCI systems are bulky, expensive and require laborious preparation before use. This study proposes a practical and user-friendly BCI system without compromising performance. METHODS: A hybrid asynchronous BCI system was developed based on an elaborately designed wearable electroencephalography (EEG) amplifier that is compact, easy to use and offers a high signal-to-noise ratio (SNR). The wearable BCI system can detect P300 signals by processing EEG signals from three channels and operates asynchronously by integrating blink detection. RESULT: The wearable EEG amplifier obtains high quality EEG signals and introduces preprocessing capabilities to BCI systems. The wearable BCI system achieves an average accuracy of 94.03±4.65%, an average information transfer rate (ITR) of 31.42±7.39 bits/min and an average false-positive rate (FPR) of 1.78%. CONCLUSION: The experimental results demonstrate the feasibility and practicality of the developed wearable EEG amplifier and BCI system. SIGNIFICANCE: Wearable asynchronous BCI systems with fewer channels are possible, indicating that BCI applications can be transferred from the laboratory to real-world scenarios.

The mutagenic effect of cold plasma on Medicago sativa L.

To explore the feasibility of using cold plasma as a mutagenesis breeding technology for forage crops, in this study we used the Medicago sativa L. cultivar, Zhongcao No. 3, as the experimental material. The effects of plasma treatments on Medicago sativa L. were analyzed through the use of plasma and activated water. Treatments with plasma and activated water inhibited plant height but promoted root growth. By creating a closed environment, adding a dielectric barrier plate, and combining these two treatment methods, the greatest impact can be had on the growth of Medicago sativa L. seeds. After treatment, the plant heights were approximately half those of the control group, and the root lengths were approximately 1.6 times those of the control group. Through emission spectroscopy, it was found that active particles such as O, NO2, and N2* were present and could be considered to have produced plasma-activated water through contact with the water surface, thus affecting the survival and growth of the seeds. Whole-genome resequencing (WGRS) was performed on the wild-type and selected mutants after treatment, with an average sequencing depth of 115.93×, an average genome alignment rate of 91.72 %, and an average genome coverage rate of 91.85 %. Various types of mutations were detected and annotated. After filtering, 7,822,324 SNP (single nucleotide polymorphisms) sites, 2,161,917 indel sites, 200,544 SV sites, 238 CNV (copy number variation) sites. The SNPs, indels (insertions/deletions), and SVs (structural variations) were mainly heterozygous, with heterozygosity rates of 87.13 %, 92.16 %, and 83.49 %, respectively. The CNVs were dominated by low copy numbers, accounting for 53.77 %. These results indicate that plasma treatment has significant effects on plant growth and genome of Medicago sativa L.

Effect of Plasma-Activated Water on the Cellulase-Producing Strain Aspergillus niger A32.

To investigate the effect and mechanism of plasma-activated water (PAW) on Aspergillus niger, PAW was prepared using a needle array-plate dielectric barrier discharge plasma system. The concentrations of long-lived reactive oxygen and nitrogen species (RONS), namely, H2O2, NO2-, and NO3-, in the PAW were 48.76 mg/L, 0.046 mg/L, and 172.36 mg/L, respectively. Chemically activated water (CAW) with the same concentration of long-lived RONS was also prepared for comparison. A. niger A32 was treated with PAW and CAW. After treatment, the treated strains were observed and analyzed with scanning electron microscopy (SEM) and transmission electron microscopy (TEM) to screen probable mutants. The results indicated that the pH, conductivity, and ORP values of PAW were 2.42, 1935 µS/cm, and 517.07 mV, respectively. In contrast, the pH and ORP values of CAW were 6.15 and 301.73 mV, respectively, which differed significantly from those of PAW. In addition, the conductivity of CAW showed no change. SEM and TEM analyses revealed that A. niger A32 treated with CAW exhibited less damage compared with the control. In contrast, A. niger A32 treated with PAW showed significant shrinkage, deformation, and exudate attachment over time. Following PAW treatment, after four passages, a high cellulase-producing stable mutant strain A-WW5 was screened, exhibiting a filter paper enzyme activity of 29.66 U/mL, a cellulose endonuclease activity of 13.79 U/mL, and a ß-glucosidase activity of 27.13 U/mL. These values were found to be 33%, 38%, and 2.1% higher than those of the original fungus sample, respectively. In total, 116 SNPs and 61 InDels were present in the genome of the mutant strain A-WW5. The above findings indicate that the impact of PAW on A. niger is not only attributed to long-lasting H2O2, NO2-, and NO3- particles but also to other short-lived active particles; PAW is expected to become a new microbial breeding mutagen.

Aperiodic Component Analysis in Quantification of Steady-State Visually Evoked Potentials.

OBJECTIVE: In this study, we aimed to investigate whether and how the aperiodic component in electroencephalograms affects different quantitative processes of steady-state visually evoked potentials and the performance of corresponding brain-computer interfaces. METHODS: We applied the Fitting Oscillations & One-Over-F method to parameterize power spectra as a combination of periodic oscillations and an aperiodic component. Electroencephalographic responses and system performance were measured and compared using four prevailing methods: power spectral density analysis, canonical correlation analysis, filter bank canonical correlation analysis and the state-of-the-art method, task discriminant component analysis. RESULTS: We found that controlling for the aperiodic component prominently downgraded the performance of brain-computer interfaces measured by canonical correlation analysis (94.9% to 82.8%), filter bank canonical correlation analysis (94.1% to 87.6%), and task discriminant component analysis (96.5% to 70.3%). However, it had almost no effect on that measured by power spectral density analysis (80.4% to 78.7%). This was accompanied by a differential aperiodic impact between power spectral density analysis and the other three methods on the differentiation of the target and non-target stimuli. CONCLUSION: The aperiodic component distinctly impacts the quantification of steady-state visually evoked potentials and the performance of corresponding brain-computer interfaces. SIGNIFICANCE: Our work underscores the significance of taking into account the dynamic nature of aperiodic activities in research related to the quantification of steady-state visually evoked potentials. The source code for our approach is available at https://github.com/didi226/scut_ssvep_aperiod.

Effect of electrohydrodynamic (EHD) drying on active ingredients, textural properties and moisture distribution of yam (Dioscorea opposita).

This paper systematically investigates the changes in material properties during electrohydrodynamic (EHD) drying, the discharge characteristics of the EHD system as well as the active ingredients, textural properties (hardness, adhesiveness, etc.) and moisture distribution of yam under EHD, air drying and hot air drying were investigated. The results showed that the active particles and the ionized wind generated during the discharge process of the electrohydrodynamic drying device had a significant effect on the drying. Compared to thermal drying, 21 kV drying resulted in the most complete cellular structure, the best internal bound water content as well as textural properties of yam. It played a positive role in the retention of internal nutrients in yam, and the total phenol and allantoin contents were increased by 25.74% and 81.99%, respectively. These results elucidate the advantages of electrohydrodynamic drying in yam drying and provide a reference for the application of EHD in drying.

Effects of discharge plasma on seed germination and volatile compounds content of Agropyron Mongolicum.

To investigate the effects of discharge plasma on Agropyron mongolicum seeds, various treatments including direct exposure to discharge plasma, combined treatment with discharge plasma and plasma-activated water (PAW) were applied to the seeds. The changes in germination rate, MDA content, and volatile compound levels of Agropyron mongolicum seeds after different treatments were examined. The results showed that the direct effect of plasma had no significant effect on the MDA content or germination rate of Agropyron mongolicum seeds due to the limited penetration depth. However, the combined effect of plasma and activated water could cause active nitrogen and oxygen particles to enter the seeds and cause oxidative stress damage. After 18 h of combined treatment, the MDA content increased significantly, and the germination rate decreased to below the semilethal dose, which was 33.44 %. After plasma treatment, 55 volatile compounds, mainly alcohols, aldehydes and ketones, were identified from the seeds of Agropyron mongolicum. Due to the oxidation and modification of the plasma, the content of most aldehydes increased with increasing reaction time. After screening, 13 volatile organic compounds could be used as potential markers to distinguish between different treatment methods. These results reveal the mechanism underlying the biological effects of plasma treatment on Agropyron mongolicum seeds.

Influence of electrohydrodynamics on the drying characteristics, microstructure and volatile composition of apricot abalone mushroom (Pleurotus eryngii).

The study explored the use of current fluid dynamics drying technology for apricot abalone mushroom, examining how different output voltages (15, 25, and 35 kV) affected drying characteristics, microstructure, and volatile components. Comparisons were made with samples dried using hot air drying (HAD) and natural air drying (AD). Results revealed that HAD had the fastest drying rate at 0.29664(g·h-1). However, apricot abalone mushroom treated with electrohydrodynamic drying (EHD) maintained a color closer to fresh samples, exhibited a 21% increase in the ordered structure of protein secondary structure, a 12.5-fold increase in bound water content, and the most stable cell structure compared to HAD and AD treatments. A total of 83 volatile organic compounds were identified in the apricot abalone mushroom, with alcohols and aldehydes being the most prominent in terms of threshold and relative content, peaking in the 35 kV treatment group. These findings provide both experimental and theoretical insights into applying current fluid dynamics for drying apricot abalone mushroom.

Screening Universal Stress-Response Terpenoids and Their Biosynthetic Genes via Volatile and Transcriptomic Profiling in Citrus.

Volatile terpenoids accumulate in citrus and play important roles in plant defense against various stressors. However, the broad-spectrum response of terpenoid biosynthesis to ubiquitous stressors in citrus has not been comparatively investigated. In this study, volatile terpenoids were profiled under six stressors: high temperature, citrus miner, citrus red mite, citrus canker, Alternaria brown spot, and huanglongbing (HLB). Significant content changes in 15 terpenoids, including ß-ocimene, were observed in more than four of the six stressors, implying their possibly universal stress-response effects. Notably, the emission of terpenoids, including ß-caryophyllene, ß-ocimene, and nerolidol glucoside, was significantly increased by HLB in HLB-tolerant "Shatian" pomelo leaves. The upregulation of CgTPS1 and CgTPS2 and their characterization in vivo identified them as mono- or sesquiterpenoid biosynthetic genes. This study provides a foundation for determining stress resistance mechanisms in citrus and biopesticide designations for future industrial applications.

Study on the thawing characteristics of beef in ultrasound combined with plasma-activated water.

The effects of deionized water thawing (DT), plasma-activated water thawing (PT), ultrasound (150 W, 40 kHz) combined with deionized water thawing (UDT), and ultrasound combined with plasma-activated water thawing (UPT) on the thawing characteristics and the physicochemical properties of the beef were investigated. The results showed that the UPT group had a faster thawing rate (38 % higher compared to the PT group) and good bactericidal ability (75 % higher compared to the UDT group), and had no adverse effect on the color and pH value of the beef. Plasma-activated water (PAW) can maintain the stability of the beef fiber, improve the water holding capacity (WHC), inhibit lipid oxidation, and reduce the loss of soluble substances such as protein. Therefore, UPT thawing is a promising meat thawing technology, which provides practical guidance and methods for the wide application of UPT in the field of meat thawing.

A novel methylation-detection panel for HPV associated high-grade squamous intraepithelial lesion and cervical cancer screening.

Cervical cancer (CC) was considered to be the most common gynaecological cancer, with an estimated 342,000 deaths worldwide each year, as the majority of patients were diagnosed at an advanced stage of the disease. The purpose of this study was to evaluate the predictive value of multi-locus methylation assay for the early detection of CC. The cervical exfoliated cell samples from 492 HPV-positive females with cervical lesions were collected and subjected to methylation detection of gene FAM19A4, EPB41L3 and PAX1 after bisulfite conversion. The levels of gene methylation in patients with different severity of cervical lesions were evaluated and compared. The receiver-operating characteristic (ROC) curve was established and efficacy indexes such as sensitivity, specificity and area under the curve (AUC) were calculated to assess the diagnostic value of DNA methylation detection at multiple gene loci for CC. The methylation levels of FAM19A4, EPB41L3 and PAX1 were significantly increased with the grade of cervical squamous intraepithelial lesions. The sensitivities of FAM19A4, EPB41L3 and PAX1 alone for high-grade squamous intraepithelial lesion (HSIL) and CC diagnosis were 84.6%, 86.3% and 88.0%, respectively; when three markers were combined by a logistic regression model, the sensitivity was 88.0%, with a high specificity of 97.7% and AUC of 0.957 (95% CI 0.937-0.977). Methylation status of FAM19A4, EPB41L3 and PAX1 were highly specific and effective for monitoring the progression of cervical lesions and the tri-gene methylation assay could be used as a triage tool for CC early screening.

Influence of electrohydrodynamics on the drying characteristics and physicochemical properties of garlic.

Electrohydrodynamic (EHD) drying, natural air drying (AD) and hot air drying (HAD) were used to comprehensively study the drying characteristics and physicochemical properties of garlic, and low-field nuclear magnetic resonance (NMR), infrared spectroscopy, scanning electron microscopy and other technologies were used as detection methods. In terms of drying characteristics, HAD has the largest effective diffusion coefficient of moisture and the shortest average drying time. EHD-treated garlic slices had the most attractive color, the highest rehydration rate, the most stable cell structure, the highest content of active ingredients, and the most stable protein secondary structure. Therefore, electrohydrodynamic drying is a promising garlic slice drying technology and provides an effective method for the large-scale production of high-quality garlic.

Influence of electrohydrodynamics on the drying characteristics and volatile components of iron stick yam.

The drying characteristics, rehydration capacity, color, infrared spectra and volatile components of iron stick yam slices were investigated under different alternating current (AC) voltages (13, 17, 21 kV), hot air drying (HAD) (60 °C) and natural drying (AD) by electrohydrodynamic (EHD) drying and HAD experimental devices. The results showed that slices of iron stick yam dried the quickest with HAD, which also had the fastest drying rate; while drying the slices of iron stick yam with EHD led to a better rehydration capacity, higher brightness L* and whiteness, a more stable protein secondary structure, and a greater variety and content of volatile components compared with AD and HAD. These finding indicated that EHD is a more promising method for drying iron stick yam.

Gene expression variation of Astragalus adsurgens Pall. through discharge plasma and its activated water.

To explore the effects of plasma-activated water (PAW) on gene expression, the combined treatment of PAW and discharge plasma on Astragalus adsurgens Pall seeds were performed, and then the gene expression of seedlings after treatmentwas analyzed at the molecular level. A needle array-plate dielectric-barrier discharge plasma was used to treat Astragalus adsurgens Pall seeds for 1, 2, and 3 h, and PAW was prepared at the same time to cultivate seeds. When the treatment time was 3 h, the survival rate of Plasma + PAW seedlings was only 9.2% of that of the CK. The Astragalus adsurgens Pall seedlings were analyzed using reactive oxygen species (ROS) and RNA-Seq. The ROS content of the seedlings in treatment group was significantly higher than that in the CK after 3 days of culture, that PAW cultivated can cause oxidative stress damage to Astragalus adsurgens Pall. The enzyme activity of the treated plant increased and the metabolic rate was accelerated. It helped to regulate the growth process of plants and improve the yield and quality of crops. This study discussed the gene expression of plasma and PAW induced Astragalus adsurgens Pall at the molecular level, and provided experimental data support for plasma and PAW treatment and selection of Astragalus adsurgens Pall.

C323 of SR-BI is required for SR-BI-mediated HDL binding and cholesteryl ester uptake.

Scavenger receptor BI (SR-BI) is an HDL receptor. It binds HDL and mediates the uptake of cholesteryl ester from HDL. Early studies have pointed out that the extracellular domain of SR-BI is critical for SR-BI-mediated cholesteryl ester uptake. However, the extracellular loop of SR-BI is large: it contains 403 amino acids. The HDL binding site and the modulation of SR-BI-mediated cholesteryl ester uptake remain to be identified. In this study, using C323G mutant SR-BI, we showed that C323G mutant SR-BI lost its HDL binding and cholesteryl ester uptake activity, indicating that the highly conserved C323 is required for SR-BI-mediated HDL binding and cholesteryl ester uptake. Using a blocking antibody against C323 region, we demonstrated that C323 is directly involved in HDL binding and likely an HDL binding site. Using C323G mutant transgenic mouse model, we further demonstrated that C323 of SR-BI is required for regulating plasma cholesterol levels in vivo. Using redox reagents, we showed that physiological relevant levels of H(2)O(2) upregulated the SR-BI-mediated cholesteryl ester uptake activity by 65%, whereas GSH or DTT significantly downregulated SR-BI-mediated cholesteryl ester uptake activity by 45%. C323 of SR-BI is critical for SR-BI-mediated HDL binding and cholesteryl ester uptake, and changes in redox status may be a regulatory factor modulating SR-BI-mediated cholesterol transport.

Caveolin-1 protects against sepsis by modulating inflammatory response, alleviating bacterial burden, and suppressing thymocyte apoptosis.

Sepsis is a leading cause of death, which is characterized by uncontrolled inflammatory response. In this study, we report that caveolin-1, a major component of caveolae, is a critical survival factor of sepsis. We induced sepsis using a well established sepsis animal model, cecal ligation and puncture (CLP). CLP induced 67% fatality in caveolin-1 null mice, but only 27% fatality in wild type littermates (p = 0.015). Further studies revealed that mice deficient in caveolin-1 exhibited marked increase in tumor necrosis factor-alpha and interleukin-6 production 20 h following CLP treatment, indicating uncontrolled inflammatory responses in the absence of caveolin-1. Caveolin-1 null mice also had a significant increase in bacteria number recovered from liver and spleen, indicating elevated bacterial burdens. In addition, caveolin-1 null mice had a 2-fold increase in thymocyte apoptosis compared with wild type littermates, indicating caveolin-1 as a critical modulator of thymocyte apoptosis during sepsis. In conclusion, our findings demonstrate that caveolin-1 is a critical protective modulator of sepsis in mice. Caveolin-1 exerts its protective function likely through its roles in modulating inflammatory response, alleviating bacterial burdens, and suppressing thymocyte apoptosis.

[Retracted] MicroRNA-33b suppresses the proliferation and metastasis of hepatocellular carcinoma cells through the inhibition of Sal-like protein 4 expression.

Following the publication of this paper, it was drawn to the Editors' attention by a concerned reader that certain of the Transwell cell migration data shown in Figs. 2D and 4C were strikingly similar to data appearing in different form in other articles by different authors. Owing to the fact that the contentious data in the above article had already been published elsewhere, or were already under consideration for publication, prior to its submission to International Journal of Molecular Medicine, the Editor has decided that this paper should be retracted from the Journal. The authors were asked for an explanation to account for these concerns, but the Editorial Office did not receive any reply. The Editor apologizes to the readership for any inconvenience caused. [the original article was published in International Journal of Molecular Medicine 38: 1587­1595, 2016; DOI: 10.3892/ijmm.2016.2754].

Spectral characteristics on increasing hydrophilicity of Alfalfa seeds treated with alternating current corona discharge field.

In this study, corona discharge at atmospheric pressure under an alternating current (AC) field with a multi-needle plate electrode structure was used as mutagen to study the effects of corona discharge field on the hydrophilicity of alfalfa seeds, especially the effects of non-uniform electric field that is frequently ignored. Alfalfa seed were divided into two groups, one group was covered with 1 mm-thick polypropylene petri dish cover that can be approximated as a single factor effect of non-uniform electric field, the other group was directly irradiated by corona discharge field under different parameters. Fourier transform infrared spectroscopy (FTIR) and dual-index sequence analysis were used to detect and compare the spectra of alfalfa seed coats with different treatments. Results showed that the peaks of the seed coat at 2856 and 1727 cm-1 in the treatment group changed, indicating that hydrophobic wax, lipid, and cellulose may be cracked or degraded. Corona discharge field treatment can change the chemical structure of alfalfa seed coats, resulting in the changes in their hydrophilicity. The results of the apparent contact angle and scanning electron microscopy (SEM) and other experiments showed that the change in 19 kV non-covered treatment group was greatest, the petri dish cover can effectively reduce the physicochemical etching of ionic wind, the hydrophilicity of alfalfa seeds improved after corona discharge field treatment regardless of whether there is an ionic effect during irradiation, and the ionic wind has a greater influence on the hydrophilicity of alfalfa seeds than the non-uniform electric field. This study revealed the biological effect mechanism of corona discharge field from the perspective of spectral characteristics and provided experimental data support for the analysis of alfalfa seed surface modification and chemical structure after corona discharge field treatment.