ABSTRACT
Xanthomonas citri pv. citri (Xcc) causes the devastating citrus canker disease. Xcc is known to have been introduced into Florida, USA in at least three different events in 1915, 1986 and 1995 with the first two claimed to be eradicated. It was questioned whether the Xcc introduction in 1986 has been successfully eradicated. Furthermore, it is unknown how Xcc has spread throughout the citrus groves in Florida. In this study, we investigated the population structure of Xcc to address these questions. We sequenced the whole genome of 343 Xcc strains collected from Florida groves between 1997 and 2016. Our analysis revealed two distinct clusters of Xcc. Our data strongly indicate that the claimed eradication of the 1986 Xcc introduction was not successful and Xcc strains from 1986 introduction were present in samples from at least 8 counties collected after 1994. Importantly, our data revealed that the Cluster 2 strains, which are present in all 20 citrus-producing counties sampled in Florida, originated from the Xcc introduction event in the Miami area in 1995. Our data suggest that Polk County is the epicenter of the dispersal of Cluster 2 Xcc strains, which is consistent with the fact that three major hurricanes passed through Polk County in 2004. As copper-based products have been extensively used to control citrus canker, we also investigated whether Xcc strains have developed resistance to copper. Notably, none of the 343 strains contained known copper resistance genes. Twenty randomly selected Xcc strains displayed sensitivity to copper. Overall, this study provides valuable insights into the introduction, eradication, spread, and copper resistance of Xcc in Florida.
Subject(s)
Citrus , Xanthomonas , Copper , Phylogeny , Xanthomonas/genetics , Plant Diseases/geneticsABSTRACT
Watermelon silver mottle virus (WSMoV), a potentially invasive virus, is known to reduce the yield and degrade the quality of infected crops in Cucurbitaceae and Solanaceae families, resulting in significant economic losses in limited areas of several Asian countries. WSMoV, previously detected on various crops in southern China, has now become more prevalent on watermelon and sweet pepper in the northern cities of China for the first time. A sequencing-based phylogenetic analysis has confirmed that the viral strains infecting cucumber, watermelon, and sweet pepper plants in Shandong Province are most closely related to those isolated from Guangdong, Guangxi, and Taiwan, suggesting a farther and continuous spread of WSMoV throughout China. To develop a fast, accurate, and practical protocol for WSMoV detection, we designed a set of primers from the conserved sequence of the WSMoV nucleocapsid protein (N) gene for a one-step assay based on reverse transcription loop-mediated isothermal amplification (RT-LAMP). The RT-LAMP assay was performed successfully for 50 min at 61°C and exhibited a highly specific result without cross-reactions with other similar viruses and a sensitivity that is 100-fold higher than that of the traditional RT-PCR. The confirmation of 26 WSMoV suspect samples collected from various regions in Shandong through the RT-LAMP testing has demonstrated that the assay is suitable and practical for detection of WSMoV in both laboratory and field settings.
Subject(s)
Citrullus , Nucleic Acid Amplification Techniques , Phylogeny , Plant Diseases , Plant Diseases/virology , Nucleic Acid Amplification Techniques/methods , Citrullus/virology , China , Reverse Transcription , Tospovirus/genetics , Tospovirus/isolation & purification , Tospovirus/classification , RNA, Viral/genetics , Capsicum/virology , Molecular Diagnostic TechniquesABSTRACT
Hexafluoropropylene oxide dimer acid (HFPO-DA) is widely used as a substitute for perfluorooctanoic acid (PFOA). HFPO-DA exhibits high water solubility and low adsorption potential, conferring significant fluidity in aquatic environments. Given that the toxicity of HFPO-DA is similar to PFOA, it is necessary to control its content in aquatic environments. Electrochemical and thermally-activated persulfates have been successfully used to degrade HFPO-DA, but UV-activated persulfates cannot degrade the compound. Given that research on degradation mechanisms is still incomplete and lacks kinetic research, the mechanism and kinetic calculations of oxidative degradation were studied in detail using DFT calculations. And the toxicity of HFPO-DA degradation intermediates and products was evaluated to reveal the feasibility of using advanced oxidation process (AOP) technology based on persulfate to degrade HFPO-DA in wastewater. The results showed that the committed step of HFPO-DA degradation was initiated by the electron transfer reaction of SO4â¢- radicals. This reaction is not spontaneous at room temperature and requires sufficient electrical or thermal energy to be absorbed from the external environment. The perfluoroalcohol produced during this reaction can subsequently undergo four possible reactions: H atom abstraction from alcohol groups by an OH radical; H atom abstraction by SO4â¢-; direct HF removal; and HF removal with water as the catalyst. The final degradation products of HFPO-DA mainly include CO2, CF3CF2COOH, CF3COOH, FCOOH and HF, which has been identified through previous experimental analysis. Ecotoxicity assessment indicates that degradation does not produce highly toxic intermediates, and that the final products are non-toxic, supporting the feasibility of persulfate-based AOP technologies.
Subject(s)
Fluorocarbons , Water Pollutants, Chemical , Oxidation-Reduction , Fluorocarbons/toxicity , Water , Water Pollutants, Chemical/toxicity , Risk AssessmentABSTRACT
Metamaterial perfect absorbers (MPAs) are attractive platforms for the unique manipulation of electromagnetic waves from near-field to far-field. Narrow-band MPAs are particularly intriguing for their potential applications as thermal emitters or biosensors. In this work, we proposed ultra-narrow-band MPAs based on surface lattice resonance (SLR) modes of WS2 nanodisk arrays on gold films. The SLR modes stem from the coupling between the magnetic dipole modes of individual nanodisks and the Rayleigh anomaly of the array giving rise to high quality-factor resonances. With proper design of the nanodisk array, an ultra-narrow-band of 15 nm is achieved in the near infrared wavelength range. The underneath gold film provides the loss channel converting the incident light within the narrow band into heat in the gold film, effectively creating a perfect absorber. Systematic numerical simulations were performed to investigate the effects of the geometrical parameters on their optical properties, demonstrating the great tunability of this type of MPAs as well as their potential for engineering light-matter interactions.
ABSTRACT
'Candidatus Liberibacter asiaticus' (CLas) is an unculturable α-proteobacterium associated with citrus Huanglongbing (HLB; yellow shoot disease). PCR procedures that accurately confirm or exclude CLas infection in citrus tissue/Asian citrus psyllid (ACP) samples are critical for HLB management. When CLas was described in 1994, a 23-bp signature oligonucleotide sequence (OI1) in the 16S rRNA gene (rrs, three genomic copies) was identified based on Sanger sequencing. OI1 contains single nucleotide polymorphisms (SNPs) distinguishing CLas from non-CLas species. The SNPs were used to design the primer HLBas, a key primer for a commonly used TaqMan PCR system (HLBas-PCR) for CLas detection. Recent developments in next-generation sequencing technology have led to the identification of 15 CLas whole genome sequence strains (WGSs). Analyses of CLas WGSs have generated a significant amount of biological information that could help to improve CLas detection. Utilizing the WGS information, this study re-evaluated the sequence integrity of OI1/HLBas and identified and/or confirmed a missing nucleotide G in the two primers. Replacement primers for OI1 and HLBas are proposed. At low cycle threshold (Ct) values (e.g., <30), HLBas-PCR remained reliable in CLas determination. At high Ct values (e.g., >30), HLBas-PCR alone was unreliable in differentiating whether samples contain low CLas titers or whether CLas is not present. The availability of ribonucleotide reductase (RNR)-PCR derived from the five-copy nrdB gene helped to resolve this problem. To further enhance low CLas titer detection, a 4CP-PCR system, based on a four-copy genomic locus, was developed. Evaluation of 107 HLB samples (94 citrus and 13 ACP) showed that 4CP-PCR was more sensitive than HLBas-PCR and shared similar sensitivity with RNR-PCR.
Subject(s)
Hemiptera , Rhizobiaceae , Animals , Plant Diseases , Polymerase Chain Reaction , RNA, Ribosomal, 16SABSTRACT
The theory and implementation of modern cochlear implant are presented in this chapter. Major signal processing strategies of cochlear implants are discussed in detail. Hardware implementation including wireless signal transmission circuit, integrated circuit design of implant circuit, and neural response measurement circuit are provided in the latter part of the chapter. Finally, new technologies that are likely to improve the performance of current cochlear implants are introduced.
Subject(s)
Cochlear Implants , Signal Processing, Computer-Assisted , Speech Perception , Cochlear Implantation , Cochlear Implants/trends , Humans , Speech Perception/physiologyABSTRACT
In 2012, stem gall samples on Loropetalum chinense were sent to Florida diagnostic labs from Alabama and Florida nurseries. A fluorescent pseudomonad was consistently isolated from the galls. The organism was originally identified in Alabama based on 16S rRNA sequencing as Pseudomonas savastanoi, which causes a production-limiting disease of olive. The loropetalum strains and reference strains were compared using LOPAT, Biolog, fatty acid analysis, multilocus sequence analysis (MLSA), and pathogenicity tests. The LOPAT tests placed the loropetalum strains within Pseudomonas syringae. Biolog and fatty acid analysis placed the strains in various pathovars of P. syringae and P. savastanoi, respectively. MLSA of a set of housekeeping genes separated the loropetalum strains from the olive knot-inducing strains. Our work indicates there is a need to use more tests than 16S rRNA to accurately diagnose new bacterial diseases. In pathogenicity tests, the loropetalum strains produced galls only on loropetalum, but not on olive, mandevilla, or almond, indicating this strain is not a threat to the olive industry. Based on the pathogenicity assays and molecular tests, loropetalum strains represent a distinct and new pathovar, P. amygdali pv. loropetali pv. nov., for which the strain PDC13-208 (= DSMZ 105780PT) has been designated as the pathotype strain.
Subject(s)
Hamamelidaceae/microbiology , Plant Diseases/microbiology , Pseudomonas/isolation & purification , Phylogeny , Pseudomonas/genetics , Pseudomonas/physiologyABSTRACT
To return vegetable remnants to soil in situ and understand parameters that determine their decomposition efficiency, the tomato remnant length, soil moisture, soil temperature and dosage of a microbial decomposer (MD) have been evaluated through a laboratory experiment using a nylon mesh bag in this study. The results showed that the residual remnant weight, and total carbon content increased 28.49 % and 32.65 %, respectively with two different remnant lengths (â¼0.5 cm and â¼2.5 cm), while the decay rate and organic carbon breakdown rate decreased by 6.14 % and 7.48 %, respectively. When the relative water content in soil increased, the residual remnant weight and total carbon content first decreased and then increased, while the trend of the decay rate (16.94 % with 80 % soil water content) and organic carbon breakdown rate (9.96 % with 60 % soil water content) were opposite. At a high MD dosage (7 % or 9 % of the total compost weight), both rates of remnants were greater than those at the low dosage (1 %), with an increase of 38.63 % or 36.19 % and 15.89 % or 15.78 %, respectively. With an increase in soil temperature, both residual remnant weight and total carbon content decreased first and then increased, while both decomposition rate and organic carbon breakdown rate increased first and then decreased by 27.35 % and 22.78 %, respectively at 45 °C, compared with those at 30 °C. It was concluded that the decomposition rate was significantly correlated with the remnant length and the MD dosage, while the organic carbon breakdown rate was significantly associated with all four parameters evaluated. The optimal decomposing efficiency was achieved through cutting tomato remnants to a length of â¼0.5 cm, maintaining soil relative moisture content at 89 %, keeping soil temperature at 50 °C, and adding 7 % microbial decomposer MD to chopped tomato cuttings.
ABSTRACT
To amend physical properties of coastal saline soil for rice production, six biochar treatments (0, 0.5, 1, 2, 4 and 6 kg biochar per m2 soil) were set up as CK, T1, T2, T3, T4 and T5, respectively and their effect on the biochemical properties of coastal saline soil and rice growth characteristics were evaluated in a barrel planting experiment. The results showed that compared with CK (with no biochar added), the soil EC of T1 and T2-T5 was reduced by 11.5 %, but increased by 8.8-62.9 %, respectively. The available potassium and organic matter contents of T1-T5 increased ranging from 3.7-10.2 % to 8.0-46.8 %, respectively. With the increase of the biochar amount, the urease activity of soil in the 0-10 cm deep soil showed an increasing trend by 194.8-744.6 % with T1-T5, compared with that of the CK treatment. The activity of alkaline phosphatase in soil increased first and then decreased, and its increment with T1-T5 was between 28.2 and 64.8 % in comparison with that of CK. With more biochar added to soil, the leaf dry weight, root dry weight, total dry matter mass, total root length, single panicle quality and weight per 100 grains showed a trend of increase first and then decrease. The highest incremental values of all measurements were obtained with T1 by 21.8 %, 23.9 %, 13.8 %, 33.9 %, 30.8 % and 11.6 % respectively, compared with those with CK. However, adding biochar in soil demonstrated insignificant effect on the weight of single panicle, panicle length, stem thickness, tillers, setting rate, soil hydrolyzable nitrogen, available phosphorus content, rice protein, amylose, and taste quality among all treatments. In summary, the application of 0.5 kg m-2 biochar can improve the biochemical properties of saline soil and therefore increase rice yield.
ABSTRACT
Plant flooding/waterlogging stress (FWS) can be a threat to food security worldwide due to climate change. To mitigate its potential devastation, numerous exogenous chemicals (ECs) have been used to demonstrate their effectiveness on alleviating FWS for the last 20 years. This review has summarized the most recent findings on use of various ECs as either nutrients or regulatory substances on crop plants under FWS and their roles involved in improving root respiration of seedlings, optimizing nutritional status, synthesizing osmotic regulators, enhancing the activity of antioxidant enzymes, adjusting phytohormone levels, maintaining photosynthetic systems, and activating flood-tolerance related gene expressions. The effect of ESs on alleviating plants under FWS proves to be beneficial and useful but rather limited unless they are applied on appropriate crops, at the right time, and with optimized methods. Further research should be focused on use of ESs in field settings and on their potential synergetic effect for more FWS tolerance.
Subject(s)
Floods , Plant Growth Regulators , Seedlings , Photosynthesis , Crops, AgriculturalABSTRACT
Tomato chlorosis virus (ToCV), transmitted by the whitefly, Bemisia tabaci (Gennadius; Hemiptera: Aleyrodidae) has been continuously emerging on tomato plants and causing a significant economic loss throughout China. In the current study, RNA-Seq analysis was used to explore the gene expression profiles of B. tabaci Mediterranean (MED) that fed on both ToCV-infected and -uninfected tomato plants for 6, 12, 24, and 48 hours, respectively. The results revealed that dynamic changes occurred in the gene expressions of whiteflies at different time intervals after they acquired the virus. A total of 1709, 461, 4548, and 1748 differentially expressed genes (DEGs) were identified after a 6, 12, 24, and 48 hours feeding interval for the viral acquisition, respectively. The least number of expressed genes appeared in whiteflies with the 12 hours feeding treatment, and the largest numbers of those found in those with 24 hours feeding treatment. Kyoto Encyclopedia of Genes and Genomes pathway analysis revealed that B. tabaci MED responded to ToCV acquisition through altering its nerve system development, fertility, detoxification, glucose metabolism, and immune function before it lost its ability to transmit the virus. The number of DEGs, degree of differential gene expressions, expression level of the same gene, involved biological processes, and metabolic functions in whiteflies post the 12 hours feeding, and viral acquisition were different from those from other three feeding treatments, which could be a significant finding suggesting an effective control of B. tabaci MED should be done less than 12 hours after whiteflies started feeding on ToCV-infected tomatoes. Our results further provided a clarified understanding in how B. tabaci was protected from viral acquisitions through comparison of the differential profile of gene expressions in whiteflies feeding on plants that were infected by semipersistent viruses.
ABSTRACT
Multiple infections of various viruses and viroids in apple trees are common and have caused a significant loss in the world apple industry. To provide an early detection of any of those possible pathogens at the molecular level, a multiplex DNA macroarray chip was designed and developed for a simultaneous identification of five common apple viruses and two viroids including apple chlorotic leaf spot virus (ACLSV), apple stem pitting virus (ASPV), apple stem grooving virus (ASGV), apple mosaic virus (ApMV), apple necrosis mosaic virus (ApNMV), apple scar skin viroid (ASSVd), and apple dimple fruit viroid (ADFVd). The macroarray with a 23 bp probe arranged with the coat protein (CP) gene or a target DNA segment of each viruses and viroids has demonstrated a high specificity and sensitivity without any competitions, inhibitions or cross-interferences when it was tested against more than a mixture of viral and viroid samples. To our best knowledge, this is the first report on the simultaneous detection of five different apple viruses and two viroids through using a DNA macroarray, therefore, we suggest that this detection protocol and procedure be used for any apple viral diagnosis before setting up a production nursery for virus-free apple seedlings.
Subject(s)
Viroids , Viroids/geneticsABSTRACT
Exogenous γ-aminobutyric acid (GABA) has been used and regarded as a potential enhancer for plant resistance against various biotic or abiotic attackers in the crop production, especially as a promising alleviator against salt stress. In order to determine whether GABA is truly effective in promoting rice resistance under a certain level of salt stress or not and to evaluate its effect on the growth and some physiological responses of two Japonica rice varieties under salt stress. 3-leaf rice seedlings germinated from seeds were cultivated in a separate hydroponic cup with a nutrient solution that was salinized with 0, 25, 50, or 75 mmol K+ of NaCl. A 4 mmol L-1 GABA solution or water were sprayed onto leaves once a day for 8 days prior to an assessment of the seedling growth, the growth indices, root activities and three antioxidant enzyme activities in leaves were measured. Data analyses indicated that as the salt concentration increased, the plant height and the leaf area of both rice varieties decreased, while the dead leaf rate, weight ratio of the dry- and fresh-roots, superoxide dismutase (SOD) and peroxidase (POD) activities increased. Under the same saline conditions, the root activities and the leaf ascorbate peroxidase (APX) activity were enhanced at a low NaCl concentration but reduced when the salt concentration was high. A foliar application of GABA daily on both rice varieties for over a week under 3 different salinized treatments as compared with the corresponding treatments sprayed with water resulted in an enhanced effect on plant height increment by 1.7-32.4%, a reduction of dead leaf rate by 1.6-36.4%, a decline of root dry weight by 9.3-30.9% respectively, and an increment in root activities by 8.1-114.5%, and POD, SOD and APX enzyme activities increased by 5.0-33.3%, 4.1-18.5%, and 7.2-64.4% respectively. However, two rice varieties showed a significant difference in response to various salinized levels. Overall results of this study demonstrate that the application of exogenous GABA on the leaves of rice seedlings under salt stress has improved rice salt tolerance, which should provide a sufficient information for ultimately making it possible to grow rice in salinized soil.
Subject(s)
Oryza , Seedlings , Sodium Chloride/pharmacology , Salt Stress , Antioxidants/pharmacology , Superoxide Dismutase/pharmacology , gamma-Aminobutyric Acid/pharmacologyABSTRACT
Abiotic stresses are various environmental factors that inhibit a normal plant growth and limit the crop productivity. Plant scientists have been attempting for a long time to understand how plants respond to these stresses and find an effective and feasible solution in mitigating their adverse impacts. Exogenous calcium ion as an essential element for the plant growth, development and reproduction has proven to be effective in alleviating plant stresses through enhancing its resistance or tolerance against them. With a comprehensive review of most recent advances and the analysis by VOSviewer in the researches on this focus of "exogenous calcium" and "stress" for last decade, this paper summarizes the mechanisms of exogenous calcium that are involved in plant defensive responses to abiotic stresses and classifies them accordingly into six categories: I) stabilization of cell walls and membranes; II) regulation of Na+ and K+ ratios; III) regulation of hormone levels in plants; IV) maintenance of photosynthesis; V) regulation of plant respiratory metabolism and improvement of root activities; and VI) induction of gene expressions and protein transcriptions for the stress resistance. Also, the progress and advances from the updated researches on exogenous calcium to alleviate seven abiotic stresses such as drought, flooding, salinity, high temperature, low temperature, heavy metals, and acid rain are outlined. Finally, the future research perspectives in agricultural production are discussed.
ABSTRACT
Accumulation and enrichment of excessive heavy metals due to industrialization and modernization not only devastate our ecosystem, but also pose a threat to the global vegetation, especially crops. To improve plant resilience against heavy metal stress (HMS), numerous exogenous substances (ESs) have been tried as the alleviating agents. After a careful and thorough review of over 150 recently published literature, 93 reported ESs and their corresponding effects on alleviating HMS, we propose that 7 underlying mechanisms of ESs be categorized in plants for: 1) improving the capacity of the antioxidant system, 2) inducing the synthesis of osmoregulatory substances, 3) enhancing the photochemical system, 4) detouring the accumulation and migration of heavy metals, 5) regulating the secretion of endogenous hormones, 6) modulating gene expressions, and 7) participating in microbe-involved regulations. Recent research advances strongly indicate that ESs have proven to be effective in mitigating a potential negative impact of HMS on crops and other plants, but not enough to ultimately solve the devastating problem associated with excessive heavy metals. Therefore, much more research should be focused and carried out to eliminate HMS for the sustainable agriculture and clean environmental through minimizing towards prohibiting heavy metals from entering our ecosystem, phytodetoxicating polluted landscapes, retrieving heavy metals from detoxicating plants or crop, breeding for more tolerant cultivars for both high yield and tolerance against HMS, and seeking synergetic effect of multiply ESs on HMS alleviation in our feature researches.
Subject(s)
Metals, Heavy , Soil Pollutants , Ecosystem , Soil Pollutants/analysis , Plant Breeding , Metals, Heavy/analysis , Crops, Agricultural/metabolism , Soil/chemistryABSTRACT
Although there are adequate DNA sequence differences among plant-associated and plant-pathogenic bacteria to facilitate molecular approaches for their identification, identification at a taxonomic level that is predictive of their phenotype is a challenge. The problem is the absence of a taxonomy that describes genetic variation at a biologically relevant resolution and of a database containing reference strains for comparison. Moreover, molecular evolution, population genetics, ecology, and epidemiology of many plant-pathogenic and plant-associated bacteria are still poorly understood. To address these challenges, a database with web interface was specifically designed for plant-associated and plant-pathogenic microorganisms. The Plant-Associated Microbes Database (PAMDB) comprises, thus far, data from multilocus sequence typing and analysis (MLST/MLSA) studies of Acidovorax citrulli, Pseudomonas syringae, Ralstonia solanacearum, and Xanthomonas spp. Using data deposited in PAMDB, a robust phylogeny of Xanthomonas axonopodis and related bacteria has been inferred, and the diversity existing in the Xanthomonas genus and in described Xanthomonas spp. has been compared with the diversity in P. syringae and R. solanacearum. Moreover, we show how PAMDB makes it easy to distinguish between different pathogens that cause almost identical diseases. The scalable design of PAMDB will make it easy to add more plant pathogens in the future.
Subject(s)
Bacteria/genetics , Databases, Factual , Internet , Plant Diseases/microbiology , Plants/microbiology , Computational Biology , PhylogenyABSTRACT
Although the cochlear implant has been widely acknowledged as the most successful neural prosthesis, only a fraction of hearing-impaired people who can potentially benefit from a cochlear implant have actually received one due to its limited awareness, accessibility, and affordability. To help overcome these limitations, a 26-electrode cochlear implant has been developed to receive China's Food and Drug Administration (CFDA) approval in 2011 and Conformité Européenne (CE) Marking in 2012. The present article describes design philosophy, system specification, and technical verification of the Nurotron device, which includes advanced digital signal processing and 4 current sources with multiple amplitude resolutions that not only are compatible with perceptual capability but also allow interleaved or simultaneous stimulation. The article also presents 3-year longitudinal evaluation data from 60 human subjects who have received the Nurotron device. The objective measures show that electrode impedance decreased within the first month of device use, but was stable until a slight increase at the end of two years. The subjective loudness measures show that electric stimulation threshold was stable while the maximal comfort level increased over the 3 years. Mandarin sentence recognition increased from the pre-surgical 0%-correct score to a plateau of about 80% correct with 6-month use of the device. Both indirect and direct comparisons indicate indistinguishable performance differences between the Nurotron system and other commercially available devices. The present 26-electrode cochlear implant has already helped to lower the price of cochlear implantation in China and will likely contribute to increased cochlear implant access and success in the rest of the world. This article is part of a Special Issue entitled
Subject(s)
Auditory Perception , Cochlear Implantation/instrumentation , Cochlear Implants , Persons With Hearing Impairments/rehabilitation , Acoustic Stimulation , Acoustics , Adolescent , Adult , Audiometry, Speech , Auditory Pathways/physiopathology , Auditory Threshold , Child , China , Electric Stimulation , Female , Humans , Loudness Perception , Male , Materials Testing , Middle Aged , Persons With Hearing Impairments/psychology , Prosthesis Design , Recovery of Function , Signal Processing, Computer-Assisted , Sound Spectrography , Speech Perception , Young AdultABSTRACT
ABSTRACT Five areas in urban Miami were identified to study the spread of Xanthomonas axonopodis pv. citri to determine if the practice of removing exposed citrus trees within 38.1 m of trees affected by citrus canker was adequate to curtail further bacterial spread. To accomplish this, 18,769 trees in dooryards were surveyed, geo-referenced by differential global positioning systems (GPS), and assayed for disease severity, age of infection, citrus cultivar, location of infection in tree, and canopy size. For each tree, the date the tree became infected was estimated and used to separate trees into contiguous 30-day categories. For each area studied, distance measurements between focal trees and newly infected trees were calculated for various temporal periods of 30, 60, 90, and 120 days in duration, corresponding to intervals of inspection survey. A visual basic application was used to calculate the distances between each newly diseased tree and all prior focal trees. The nearest distance was used because it was considered the most conservative estimate possible. It is therefore likely to be an underestimate of spread but is a good estimate of the minimum possible distances of spread. For the first four 30-day periods among the five study areas, calculated maximum distances of spread ranged from 12 to 3,474 m, indicating a broad continuum of distance for bacterial spread was possible. Disease increased during the first two-thirds of the time studied and reached an asymptote due to dry conditions in the final one-third of the duration of the study. Cross correlation analysis indicated that disease was best visualized 107 days following rainstorms with wind. Analysis of regional spatial point patterns was performed temporally for each 30-day period via a modified Ripley's K-function. Spatiotemporal analyses between periods over areas larger than previously examined were accomplished via spatiotemporal semivariogram analysis. These methods in combination demonstrated rapid increases in range of spatial dependency and range of spatiotemporal dependency for all study sites. This corresponded to rapid spread of disease across the regions studied in response to rainstorms with wind followed by a "filling in" of disease on remaining noninfected susceptible trees through time by less intense rain events. A stochastic quadratization technique demonstrated that disease incidence and disease severity were not greatly affected by urban host density but were positively correlated to host susceptibility within local 0.25-km(2) quadrats.
ABSTRACT
In the Wellington and Lake Worth areas of Palm Beach County, FL, citrus canker appeared on Key/Mexican lime (Citrus aurantiifolia) and alemow (C. macrophylla) trees over a period of about 6 to 7 years before detection, but nearby canker-susceptible citrus, such as grapefruit (C. × paradisi) and sweet orange (C. sinensis), were unaffected. Colonies of the causal bacterium, isolated from leaf, stem, and fruit lesions, appeared similar to the Asiatic group of strains of Xanthomonas axonopodis pv. citri (Xac-A) on the nutrient agar plate, but the growth on lima bean agar slants was less mucoid. The bacterium produced erumpent, pustule-like lesions of typical Asiatic citrus canker syndrome after inoculation into Key/Mexican lime, but brownish, flat, and necrotic lesions on the leaves of Duncan grapefruit, Madame Vinous sweet orange, sour orange (C. aurantium), citron (C. medica), Orlando tangelo (C. reticulata × C. × paradisi), and trifoliate orange (Poncirus trifoliata). The bacterium did not react with the Xac-A specific monoclonal antibody A1 using enzyme-linked immunosorbent assay (ELISA) and could not be detected by polymerase chain reaction (PCR)-based assays using primers selected for Xac-A. DNA reassociation analysis confirmed that the pathogen, designated as Xac-AW, was more closely related to Xac-A and Xac-A* strains than X. axonopodis pv. aurantifolii or the citrus bacterial spot pathogen (X. axonopodis pv. citrumelo). The strain can be easily differentiated from Xac-A and Xac-A* using ELISA, PCR-based tests, fatty acid analysis, pulsed-field gel electrophoresis of genomic DNA, and host specificity.
ABSTRACT
An integrated vestibular-cochlear implant can be rapidly prototyped and clinically tested by modifying an existing modern cochlear implant. The modifications include addition of gyroscope sensors and reallocation of several electrodes that are normally used for auditory nerve stimulation to the semicircular canals, while sharing the external DSP processor and the internal receiver/stimulator. This paper discusses the validation issues related to hardware and software design that arise in integrating electric hearing and balance onto a single device. The device's initially targeted population will be deaf individuals who also have vestibular impairment since there is a strong ethical justification for vestibular implantation along with minimal additional surgical risk. Because of widespread usage of ototoxic drugs and unique genetic mutations, the patient population with both impaired hearing and balance function is especially prevalent in Asian countries such as China and India. Should such an integrated vestibular-cochlear implant be verified, it could be used to restore balance or treat a wide array of vestibular disorders.