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1.
Am J Med Genet B Neuropsychiatr Genet ; 183(2): 128-139, 2020 03.
Article in English | MEDLINE | ID: mdl-31854516

ABSTRACT

Glutamatergic signaling is the primary excitatory neurotransmission pathway in the brain, and its relationship to neuropsychiatric disorders is of considerable interest. Our previous attempted suicide genome-wide association study, and numerous studies investigating gene expression, genetic variation, and DNA methylation have implicated aberrant glutamatergic signaling in suicide risk. The glutamatergic pathway gene LRRTM4 was an associated gene identified in our attempted suicide genome-wide association study, with association support seen primarily in females. Recent evidence has also shown that glutamatergic signaling is partly regulated by sex-related hormones. The LRRTM gene family encodes neuronal leucine-rich transmembrane proteins that localize to and promote glutamatergic synapse development. In this study, we sequenced the coding and regulatory regions of all four LRRTM gene members plus a large intronic region of LRRTM4 in 476 bipolar disorder suicide attempters and 473 bipolar disorder nonattempters. We identified two male-specific variants, one female- and five male-specific haplotypes significantly associated with attempted suicide in LRRTM4. Furthermore, variants within significant haplotypes may be brain expression quantitative trait loci for LRRTM4 and some of these variants overlap with predicted hormone response elements. Overall, these results provide supporting evidence for a sex-specific association of genetic variation in LRRTM4 with attempted suicide.


Subject(s)
Bipolar Disorder/genetics , Membrane Proteins/genetics , Nerve Tissue Proteins/genetics , Suicide/psychology , Adult , Bipolar Disorder/complications , Excitatory Amino Acid Agents/metabolism , Female , Gene Expression/genetics , Genetic Predisposition to Disease/genetics , Genetic Variation/genetics , Genome-Wide Association Study/methods , Haplotypes/genetics , Humans , Leucine-Rich Repeat Proteins , Male , Membrane Proteins/metabolism , Nerve Tissue Proteins/metabolism , Polymorphism, Single Nucleotide/genetics , Proteins/genetics , Proteins/metabolism , Suicidal Ideation , Suicide/trends , Suicide, Attempted/psychology
2.
Am J Med Genet B Neuropsychiatr Genet ; 180(7): 496-507, 2019 10.
Article in English | MEDLINE | ID: mdl-31350827

ABSTRACT

The addition of a methyl group to, typically, a cytosine-guanine dinucleotide (CpG) creates distinct DNA methylation patterns across the genome that can regulate gene expression. Aberrant DNA methylation of CpG sites has been associated with many psychiatric disorders including bipolar disorder (BD) and suicide. Using the SureSelectXT system, Methyl-Seq, we investigated the DNA methylation status of CpG sites throughout the genome in 50 BD individuals (23 subjects who died by suicide and 27 subjects who died from other causes) and 31 nonpsychiatric controls. We identified differentially methylated regions (DMRs) from three analyses: (a) BD subjects compared to nonpsychiatric controls (BD-NC), (b) BD subjects who died by suicide compared to nonpsychiatric controls (BDS-NC), and (c) BDS subjects compared to BD subjects who died from other causes (BDS-BDNS). One DMR from the BDS-NC analysis, located in ARHGEF38, was significantly hypomethylated (23.4%) in BDS subjects. This finding remained significant after multiple testing (PBootstrapped = 9.0 × 10-3 ), was validated using pyrosequencing, and was more significant in males. A secondary analysis utilized Ingenuity Pathway Analysis to identify enrichment in nominally significant DMRs. This identified an association with several pathways including axonal guidance signaling, calcium signaling, ß-adrenergic signaling, and opioid signaling. Our comprehensive study provides further support that DNA methylation alterations influence the risk for BD and suicide. However, further investigation is required to confirm these associations and identify their functional consequences.


Subject(s)
Bipolar Disorder/genetics , DNA Methylation/genetics , Suicide/psychology , CpG Islands/genetics , Epigenesis, Genetic/genetics , Female , Genome/genetics , Genome-Wide Association Study , Humans , Male , Promoter Regions, Genetic/genetics , Signal Transduction/genetics
3.
Am J Med Genet B Neuropsychiatr Genet ; 171(6): 888-95, 2016 09.
Article in English | MEDLINE | ID: mdl-27229768

ABSTRACT

Suicidal behavior imposes a tremendous cost, with current US estimates reporting approximately 1.3 million suicide attempts and more than 40,000 suicide deaths each year. Several recent research efforts have identified an association between suicidal behavior and the expression level of the spermidine/spermine N1-acetyltransferase 1 (SAT1) gene. To date, several SAT1 genetic variants have been inconsistently associated with altered gene expression and/or directly with suicidal behavior. To clarify the role SAT1 genetic variation plays in suicidal behavior risk, we present a whole-gene sequencing effort of SAT1 in 476 bipolar disorder subjects with a history of suicide attempt and 473 subjects with bipolar disorder but no suicide attempts. Agilent SureSelect target enrichment was used to sequence all exons, introns, promoter regions, and putative regulatory regions identified from the ENCODE project within 10 kb of SAT1. Individual variant, haplotype, and collapsing variant tests were performed. Our results identified no variant or assessed region of SAT1 that showed a significant association with attempted suicide, nor did any assessment show evidence for replication of previously reported associations. Overall, no evidence for SAT1 sequence variation contributing to the risk for attempted suicide could be identified. It is possible that past associations of SAT1 expression with suicidal behavior arise from variation not captured in this study, or that causal variants in the region are too rare to be detected within our sample. Larger sample sizes and broader sequencing efforts will likely be required to identify the source of SAT1 expression level associations with suicidal behavior. © 2016 Wiley Periodicals, Inc.


Subject(s)
Acetyltransferases/genetics , Suicide, Attempted/psychology , Acetyltransferases/metabolism , Acetyltransferases/physiology , Adult , Bipolar Disorder/genetics , Female , Gene Expression Regulation , Genetic Predisposition to Disease , Genetic Variation/genetics , Haplotypes/genetics , Humans , Male , Risk Factors , Sequence Analysis, DNA , Suicidal Ideation , Suicide/psychology
4.
Am J Med Genet B Neuropsychiatr Genet ; 171(8): 1080-1087, 2016 12.
Article in English | MEDLINE | ID: mdl-27480506

ABSTRACT

Suicidal behavior has been shown to have a heritable component that is partly driven by psychiatric disorders [Brent and Mann, 2005]. However, there is also an independent factor contributing to the heritability of suicidal behavior. We previously conducted a genome-wide association study (GWAS) of bipolar suicide attempters and bipolar non-attempters to assess this independent factor [Willour et al., 2012]. This GWAS implicated glutamatergic neurotransmission in attempted suicide. In the current study, we have conducted a targeted next-generation sequencing study of the glutamatergic N-methyl-D-aspartate (NMDA) receptor, neurexin, and neuroligin gene families in 476 bipolar suicide attempters and 473 bipolar non-attempters. The goal of this study was to gather sequence information from coding and regulatory regions of these glutamatergic genes to identify variants associated with attempted suicide. We identified 186 coding variants and 4,298 regulatory variants predicted to be functional in these genes. No individual variants were overrepresented in cases or controls to a degree that was statistically significant after correction for multiple testing. Additionally, none of the gene-level results were statistically significant following correction. While this study provides no direct support for a role of the examined glutamatergic candidate genes, further sequencing in expanded gene sets and datasets will be required to ultimately determine whether genetic variation in glutamatergic signaling influences suicidal behavior. © 2016 Wiley Periodicals, Inc.


Subject(s)
Bipolar Disorder/genetics , Receptors, N-Methyl-D-Aspartate/genetics , Suicide, Attempted/psychology , Adult , Aged , Aged, 80 and over , Bipolar Disorder/psychology , Calcium-Binding Proteins , Cell Adhesion Molecules, Neuronal/genetics , Excitatory Amino Acids , Female , Genetic Predisposition to Disease/genetics , Genetic Variation/genetics , Genome-Wide Association Study , Glutamic Acid/genetics , Glutamic Acid/metabolism , High-Throughput Nucleotide Sequencing , Humans , Male , Middle Aged , Nerve Tissue Proteins/genetics , Neural Cell Adhesion Molecules , Polymorphism, Single Nucleotide/genetics , Suicidal Ideation , Suicide/psychology
5.
Am J Med Genet B Neuropsychiatr Genet ; 159B(1): 112-9, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22170779

ABSTRACT

Epidemiological studies, such as family, twin, and adoption studies, demonstrate the presence of a heritable component to both attempted and completed suicide. Some of this heritability is accounted for by the presence of comorbid psychiatric disorders, but the evidence also indicates that a portion of this heritability is specific to suicidality. The serotonergic system has been studied extensively in this phenotype, but findings have been inconsistent, possibly due to the presence of multiple susceptibility variants and/or gene-gene interactions. In this study, we genotyped 174 tag and coding single nucleotide polymorphisms (SNPs) from 17 genes within the serotonin pathway on 516 subjects with a major mood disorder and a history of a suicide attempt (cases) and 515 healthy controls, with the goal of capturing the common genetic variation across each of these candidate genes. We tested the 174 markers in single-SNP, haplotype, gene-based, and epistasis analyses. While these association analyses identified multiple marginally significant SNPs, haplotypes, genes, and interactions, none of them survived correction for multiple testing. Additional studies, including assessment in larger sample sets and deep resequencing to identify rare causal variants, may be required to fully understand the role that the serotonin pathway plays in suicidal behavior.


Subject(s)
Genetic Association Studies , Serotonin/genetics , Signal Transduction/genetics , Suicide, Attempted , Humans , Polymorphism, Single Nucleotide/genetics , Suicide, Attempted/psychology , Synaptic Transmission/genetics
6.
Transl Psychiatry ; 11(1): 379, 2021 07 07.
Article in English | MEDLINE | ID: mdl-34234108

ABSTRACT

Bipolar disorder (BP) suicide death rates are 10-30 times greater than the general population, likely arising from environmental and genetic risk factors. Though suicidal behavior in BP has been investigated, studies have not addressed combined clinical and genetic factors specific to suicide death. To address this gap, a large, harmonized BP cohort was assessed to identify clinical risk factors for suicide death and attempt which then directed testing of underlying polygenic risks. 5901 individuals of European ancestry were assessed: 353 individuals with BP and 2498 without BP who died from suicide (BPS and NBPS, respectively) from a population-derived sample along with a volunteer-derived sample of 799 individuals with BP and a history of suicide attempt (BPSA), 824 individuals with BP and no prior attempts (BPNSA), and 1427 individuals without several common psychiatric illnesses per self-report (C). Clinical and subsequent directed genetic analyses utilized multivariable logistic models accounting for critical covariates and multiple testing. There was overrepresentation of diagnosis of PTSD (OR = 4.9, 95%CI: 3.1-7.6) in BPS versus BPSA, driven by female subjects. PRS assessments showed elevations in BPS including PTSD (OR = 1.3, 95%CI:1.1-1.5, versus C), female-derived ADHD (OR = 1.2, 95%CI:1.1-1.4, versus C), and male insomnia (OR = 1.4, 95%CI: 1.1-1.7, versus BPSA). The results provide support from genetic and clinical standpoints for dysregulated traumatic response particularly increasing risk of suicide death among individuals with BP of Northern European ancestry. Such findings may direct more aggressive treatment and prevention of trauma sequelae within at-risk bipolar individuals.


Subject(s)
Bipolar Disorder , Suicide, Attempted , Bipolar Disorder/genetics , Female , Humans , Male , Mood Disorders , Risk Factors , Suicidal Ideation
7.
Am J Med Genet B Neuropsychiatr Genet ; 153B(5): 1016-23, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20468057

ABSTRACT

Family, twin, and adoption studies provide convincing evidence for a genetic contribution to suicidal behavior. The heritability for suicidal behavior depends in part on the transmission of psychiatric disorders, such as mood disorders and substance use disorders, but is also partly independent of them. Three linkage studies using the attempted suicide phenotype in pedigrees with bipolar disorder, major depression, or alcoholism have provided consistent evidence that 2p11-12 harbors a susceptibility gene for attempted suicide. A microarray expression study using postmortem brain samples has implicated a gene from the 2p11-12 candidate region, the trans-Golgi network protein 2 (TGOLN2) gene, as being consistently up-regulated in suicide cases as compared to controls. Here, we present a TGOLN2 case-control association study using nine single nucleotide polymorphisms (SNPs). These nine SNPs, which include seven tag SNPs and two coding SNPs, have been genotyped in 517 mood disorder subjects with a history of attempted suicide and 515 normal controls. Allelic and genotypic analyses of the case-control sample did not provide evidence for association with the attempted suicide phenotype. Eight of the nine SNPs provided supportive evidence for association (P-values ranging from 0.008 to 0.03) when we compared the attempted suicide cases with a history of alcoholism to the attempted suicide cases without a history of alcoholism. However, this association finding was not replicated in an independent sample. Taken together, these analyses do not provide support for the hypothesis that common genetic variation in TGOLN2 contributes significantly to the risk for attempted suicide in subjects with major mood disorders.


Subject(s)
Genetic Association Studies , Genetic Predisposition to Disease , Membrane Glycoproteins/genetics , Suicide, Attempted , Adult , Alcoholism/complications , Alcoholism/genetics , Alleles , Case-Control Studies , Female , Haplotypes/genetics , Humans , Male , Middle Aged , Odds Ratio , Polymorphism, Single Nucleotide/genetics , Reproducibility of Results
8.
J Psychiatr Res ; 121: 151-158, 2020 02.
Article in English | MEDLINE | ID: mdl-31830721

ABSTRACT

We previously conducted a genome-wide association study (GWAS) of attempted suicide within bipolar disorder, which implicated common variation in the 2p25 region primarily in males. The top association signal from our GWAS occurred in an intergenic region of 2p25 (p = 5.07 × 10-8) and was supported by two independent studies. In the current study, to better characterize the association of the 2p25 region with attempted suicide, we sequenced the entire 350kb 2p25 region in 476 bipolar suicide attempters and 473 bipolar non-attempters using targeted next-generation sequencing. This fine-mapping project identified 4,681 variants in the 2p25 region. We performed both gene-level and individual-variant tests on our sequencing results and identified 375 variants which were nominally significant (p < 0.05) and three common variants that were significantly associated with attempted suicide in males (corrected p = 0.035, odds ratio (OR) = 2.13). These three variants are in strong linkage disequilibrium with the top variant from our GWAS. Our top five variants are also predicted expression quantitative trait loci (eQTL) for three genes in the 2p25 region based on publicly available brain expression databases. Our sequencing and eQTL data implicate these three genes - SH3YL1, ACP1, and FAM150B - and three additional pathways - androgen receptor, Wnt signaling, and glutamatergic/GABAergic signaling - in the association of the 2p25 region with suicide. The current study provides additional support for an association of the 2p25 region with attempted suicide in males and identifies several candidate genes and pathways that warrant further investigation to understand their role in suicidal behavior.


Subject(s)
Bipolar Disorder/genetics , Bipolar Disorder/physiopathology , Chromosomes, Human, Pair 2/genetics , Signal Transduction/genetics , Suicide, Attempted , Adolescent , Adult , Aged , Aged, 80 and over , Female , Genome-Wide Association Study , High-Throughput Nucleotide Sequencing , Humans , Linkage Disequilibrium , Male , Middle Aged , Quantitative Trait Loci , Sequence Analysis, DNA , Sex Factors , Young Adult
9.
Am J Med Genet B Neuropsychiatr Genet ; 150B(5): 693-702, 2009 Jul 05.
Article in English | MEDLINE | ID: mdl-19127563

ABSTRACT

The Neuregulin 1 gene (NRG1) has been associated with schizophrenia, and, to a lesser extent, with bipolar disorder (BP). We investigated the association of NRG1 with BP in a large family sample, and then performed analyses according to the presence of psychotic features or mood-incongruent psychotic features. We genotyped 116 tagSNPs and four Icelandic "core" SNPs in 1,199 subjects from 314 nuclear families. Of 515 BP offspring, 341 had psychotic features, and 103 had mood-incongruent psychotic features. In single-marker and sliding window haplotype analyses using FBAT, there was little association using the standard BP or mood-incongruent psychotic BP phenotypes, but stronger signals were seen in the psychotic BP phenotype. The most significant associations with psychotic BP were in haplotypes within the 5' "core" region. The strongest global P-value was across three SNPs: NRG241930-NRG243177-rs7819063 (P = 0.0016), with an undertransmitted haplotype showing an individual P = 0.0007. The most significant individual haplotype was an undertransmitted two-allele subset of the above (NRG243177-rs7819063, P = 0.0004). Additional associations with psychotic BP were found across six SNPs in a 270 kb central region of the gene. The most 3' of these, rs7005606 (P = 0.0029), is located approximately 4 kb from the type I NRG1 isoform promoter. In sum, our study suggests that NRG1 may be specifically associated with the psychotic subset of BP; however, our results should be interpreted cautiously since they do not meet correction for multiple testing and await independent replication.


Subject(s)
Bipolar Disorder/genetics , Family , Nerve Tissue Proteins/genetics , Chromosome Mapping/methods , Genetic Predisposition to Disease , Genotype , Humans , Linkage Disequilibrium , Neuregulin-1 , Phenotype , Polymorphism, Single Nucleotide , Promoter Regions, Genetic , Schizophrenia/genetics
10.
Am J Med Genet B Neuropsychiatr Genet ; 150B(7): 960-6, 2009 Oct 05.
Article in English | MEDLINE | ID: mdl-19194963

ABSTRACT

The D-amino acid oxidase activator (DAOA, previously known as G72) gene, mapped on 13q33, has been reported to be genetically associated with bipolar disorder (BP) in several populations. The consistency of associated variants is unclear and rare variants in exons of the DAOA gene have not been investigated in psychiatric diseases. We employed a conditional linkage method-STatistical Explanation for Positional Cloning (STEPC) to evaluate whether any associated single nucleotide polymorphisms (SNPs) account for the evidence of linkage in a pedigree series that previously has been linked to marker D13S779 at 13q33. We also performed an association study in a sample of 376 Caucasian BP parent-proband trios by genotyping 38 common SNPs in the gene region. Besides, we resequenced coding regions and flanking intronic sequences of DAOA in 555 Caucasian unrelated BP patients and 564 mentally healthy controls, to identify putative functional rare variants that may contribute to disease. One SNP rs1935058 could "explain" the linkage signal in the family sample set (P = 0.055) using STEPC analysis. No significant allelic association was detected in an association study by genotyping 38 common SNPs in 376 Caucasian BP trios. Resequencing identified 53 SNPs, of which 46 were novel SNPs. There was no significant excess of rare variants in cases relative to controls. Our results suggest that DAOA does not have a major effect on BP susceptibility. However, DAOA may contribute to bipolar susceptibility in some specific families as evidenced by the STEPC analysis.


Subject(s)
Bipolar Disorder/enzymology , Bipolar Disorder/genetics , Carrier Proteins/genetics , Polymorphism, Single Nucleotide/genetics , Cloning, Molecular , Exons/genetics , Female , Genetic Predisposition to Disease , Humans , Intracellular Signaling Peptides and Proteins , Male , Sequence Analysis, DNA
11.
Psychiatry Res ; 160(1): 83-93, 2008 Jul 15.
Article in English | MEDLINE | ID: mdl-18514325

ABSTRACT

Despite progress in identifying homogeneous subphenotypes of obsessive-compulsive disorder (OCD) through factor analysis of the Yale Brown Obsessive-Compulsive Scale Symptom Checklist (YBOCS-SC), prior solutions have been limited by a reliance on presupposed symptom categories rather than discrete symptoms. Furthermore, there have been few attempts to evaluate the familiality of OCD symptom dimensions. The purpose of this study was to extend prior work by this collaborative group in category-based dimensions by conducting the first-ever exploratory dichotomous factor analysis using individual OCD symptoms, comparing these results to a refined category-level solution, and testing the familiality of derived factors. Participants were 485 adults in the six-site OCD Collaborative Genetics Study, diagnosed with lifetime OCD using semi-structured interviews. YBOCS-SC data were factor analyzed at both the individual item and symptom category levels. Factor score intraclass correlations were calculated using a subsample of 145 independent affected sib pairs. The item- and category-level factor analyses yielded nearly identical 5-factor solutions. While significant sib-sib associations were found for four of the five factors, Hoarding and Taboo Thoughts were the most robustly familial (r ICC>or=0.2). This report presents considerable converging evidence for a five-factor structural model of OCD symptoms, including separate factor analyses employing individual symptoms and symptom categories, as well as sibling concordance. The results support investigation of this multidimensional model in OCD genetic linkage studies.


Subject(s)
Family , Obsessive-Compulsive Disorder/diagnosis , Obsessive-Compulsive Disorder/genetics , Psychiatric Status Rating Scales/statistics & numerical data , Adult , Aged , Aged, 80 and over , Algorithms , Cohort Studies , Data Interpretation, Statistical , Diagnostic and Statistical Manual of Mental Disorders , Factor Analysis, Statistical , Family/psychology , Female , Genetic Linkage , Genotype , Humans , Male , Middle Aged , Models, Psychological , Obsessive-Compulsive Disorder/psychology , Personality Inventory/statistics & numerical data , Phenotype , Principal Component Analysis , Psychometrics
12.
Am J Med Genet B Neuropsychiatr Genet ; 147B(7): 1047-55, 2008 Oct 05.
Article in English | MEDLINE | ID: mdl-18228528

ABSTRACT

Several previous studies suggest that dysfunction of circadian rhythms may increase susceptibility to bipolar disorder (BP). We conducted an association study of five circadian genes (CRY2, PER1-3, and TIMELESS) in a family collection of 36 trios and 79 quads (Sample I), and 10 circadian genes (ARNTL, ARNTL2, BHLHB2, BHLHB3, CLOCK, CRY1, CSNK1D, CSNK1E, DBP, and NR1D1) in an extended family collection of 70 trios and 237 quads (Sample II), which includes the same 114 families but not necessarily the same individuals as Sample I. In Sample II, the Sibling-Transmission Disequilibrium Test (sib-tdt) analysis showed nominally significant association of BP with three SNPs within or near the CLOCK gene (rs534654, P = 0.0097; rs6850524, P = 0.012; rs4340844, P = 0.015). In addition, SNPs in the ARNTL2, CLOCK, DBP, and TIMELESS genes and haplotypes in the ARNTL, CLOCK, CSNK1E, and TIMELESS genes showed suggestive evidence of association with several circadian phenotypes identified in BP patients. However, none of these associations reached gene-wide or experiment-wide significance after correction for multiple-testing. A multi-locus interaction between rs6442925 in the 5' upstream of BHLHB2, rs1534891 in CSNK1E, and rs534654 near the 3' end of the CLOCK gene, however, is significantly associated with BP (P = 0.00000172). It remains significant after correcting for multiple testing using the False Discovery Rate method. Our results indicate an interaction between three circadian genes in susceptibility to bipolar disorder.


Subject(s)
Basic Helix-Loop-Helix Transcription Factors/genetics , Bipolar Disorder/genetics , Casein Kinase 1 epsilon/genetics , Circadian Rhythm/genetics , Genetic Predisposition to Disease , Homeodomain Proteins/genetics , Trans-Activators/genetics , CLOCK Proteins , Epistasis, Genetic , Family Health , Female , Gene Regulatory Networks , Haplotypes , Humans , Linkage Disequilibrium , Male , Polymorphism, Single Nucleotide
13.
Am J Med Genet B Neuropsychiatr Genet ; 147B(7): 1270-7, 2008 Oct 05.
Article in English | MEDLINE | ID: mdl-18444252

ABSTRACT

Neurotransmission pathways/systems have been proposed to be involved in the pathophysiology and treatment of bipolar disorder for over 40 years. In order to test the hypothesis that common variants of genes in one or more of five neurotransmission systems confer risk for bipolar disorder, we analyzed 1,005 tag single nucleotide polymorphisms in 90 genes from dopaminergic, serotonergic, noradrenergic, GABAergic, and glutamatergic neurotransmitter systems in 101 trios and 203 quads from Caucasian bipolar families. Our sample has 80% power to detect ORs >or= 1.82 and >or=1.57 for minor allele frequencies of 0.1 and 0.5, respectively. Nominally significant allelic and haplotypic associations were found for genes from each neurotransmission system, with several reaching gene-wide significance (allelic: GRIA1, GRIN2D, and QDPR; haplotypic: GRIN2C, QDPR, and SLC6A3). However, none of these associations survived correction for multiple testing in an individual system, or in all systems considered together. Significant single nucleotide polymorphism associations were not found with sub-phenotypes (alcoholism, psychosis, substance abuse, and suicide attempts) or significant gene-gene interactions. These results suggest that, within the detectable odds ratios of this study, common variants of the selected genes in the five neurotransmission systems do not play major roles in influencing the risk for bipolar disorder or comorbid sub-phenotypes.


Subject(s)
Bipolar Disorder/genetics , Family Health , Genetic Predisposition to Disease , Neurotransmitter Agents/metabolism , Bipolar Disorder/epidemiology , Humans , Neurotransmitter Agents/genetics , Odds Ratio , Phenotype , Polymorphism, Single Nucleotide , White People
14.
Am J Med Genet B Neuropsychiatr Genet ; 147B(5): 612-8, 2008 Jul 05.
Article in English | MEDLINE | ID: mdl-18163389

ABSTRACT

Previous linkage studies have identified chromosome 8q24 as a promising positional candidate region to search for bipolar disorder (BP) susceptibility genes. We, therefore, sought to identify BP susceptibility genes on chromosome 8q24 using a family-based association study of a dense panel of SNPs selected to tag the known common variation across the region of interest. A total of 1,458 SNPs across 16 Mb of 8q24 were examined in 3,512 subjects, 1,954 of whom were affected with BP, from 737 multiplex families. Single-locus tests were carried out with FBAT and Geno-PDT, and multi-locus test were carried out with HBAT and multi-locus Geno-PDT. None of the SNPs were associated with BP in the single-locus tests at a level that exceeded our threshold for study-wide significance (P < 3.00 x 10(-5)). However, there was consistent evidence at our threshold for the suggestive level (P < 7.00 x 10(-4)) from both the single locus and multi-locus tests of associations with SNPs in the genes ADCY8, ST3GAL1, and NSE2. Multi-locus analyses suggested joint effects between ADCY8 and ST3GAL1 (P = 3.00 x 10(-4)), with at least one copy of the "high risk" allele required at both genes for association with BP, consistent with a jointly dominant-dominant model of action. These findings with ADCY8 and ST3GAL1 warrant further investigation in order to confirm the observed associations and their functional significance for BP susceptibility.


Subject(s)
Bipolar Disorder/genetics , Chromosomes, Human, Pair 8/genetics , Polymorphism, Single Nucleotide/genetics , Bipolar Disorder/classification , Female , Genes, Dominant , Genotype , Humans , Male
15.
Epigenetics ; 13(6): 627-641, 2018.
Article in English | MEDLINE | ID: mdl-29943663

ABSTRACT

Chronic stress resulting from prolonged exposure to negative life events increases the risk of mood and anxiety disorders. Although chronic stress can change gene expression relevant for behavior, molecular regulators of this change have not been fully determined. One process that could play a role is DNA methylation, an epigenetic process whereby a methyl group is added onto nucleotides, predominantly cytosine in the CpG context, and which can be induced by chronic stress. It is unknown to what extent chronic social defeat, a model of human social stress, influences DNA methylation patterns across the genome. Our study addressed this question by using a targeted-capture approach called Methyl-Seq to investigate DNA methylation patterns of the dentate gyrus at putative regulatory regions across the mouse genome from mice exposed to 14 days of social defeat. Findings were replicated in independent cohorts by bisulfite-pyrosequencing. Two differentially methylated regions (DMRs) were identified. One DMR was located at intron 9 of Drosha, and it showed reduced methylation in stressed mice. This observation replicated in one of two independent cohorts. A second DMR was identified at an intergenic region of chromosome X, and methylation in this region was increased in stressed mice. This methylation difference replicated in two independent cohorts and in Major Depressive Disorder (MDD) postmortem brains. These results highlight a region not previously known to be differentially methylated by chronic social defeat stress and which may be involved in MDD.


Subject(s)
DNA Methylation , Stress, Psychological/genetics , X Chromosome/genetics , Aggression , Animals , Brain/metabolism , Conserved Sequence , Male , Mice , Mice, Inbred C57BL , Ribonuclease III/genetics , Stress, Psychological/etiology
16.
Biol Psychiatry ; 61(5): 725-7, 2007 Mar 01.
Article in English | MEDLINE | ID: mdl-17046723

ABSTRACT

BACKGROUND: We are interested in identifying susceptibility genes that predispose subjects to attempted suicide. METHODS: We conducted a secondary analysis of genome-wide linkage data from 162 bipolar pedigrees that incorporated attempted suicide as a clinical covariate. RESULTS: The strongest covariate-based linkage signal was seen on 2p12 at marker D2S1777. The logarithm of odds (LOD) score at marker D2S1777 rose from 1.56 to 3.82 after inclusion of the suicide covariate, resulting in significant chromosome-wide empirically derived p-values for the overall linkage finding (p = .01) and for the change in LOD score after the inclusion of the covariate (p = .02). CONCLUSIONS: The finding on chromosome 2 replicates results from two previous studies of attempted suicide in pedigrees with alcohol dependence and in pedigrees with recurrent early-onset depression. Combined, these three studies provide compelling evidence for a locus influencing attempted suicide on 2p12.


Subject(s)
Bipolar Disorder/genetics , Bipolar Disorder/psychology , Chromosomes, Human, Pair 2 , Genetic Linkage , Genetic Predisposition to Disease , Suicide, Attempted , Chromosome Mapping , Humans , Lod Score , Pedigree , Statistics, Nonparametric
17.
Biol Psychiatry ; 61(5): 617-25, 2007 Mar 01.
Article in English | MEDLINE | ID: mdl-17027929

ABSTRACT

BACKGROUND: Identification of familial, more homogenous characteristics of obsessive-compulsive disorder (OCD) may help to define relevant subtypes and increase the power of genetic and neurobiological studies of OCD. While factor-analytic studies have found consistent, clinically meaningful OCD symptom dimensions, there have been only limited attempts to evaluate the familiality and potential genetic basis of such dimensions. METHODS: Four hundred eighteen sibling pairs with OCD were evaluated using the Structured Clinical Interview for DSM-IV and the Yale-Brown Obsessive Compulsive Scale (YBOCS) Symptom Checklist and Severity scales. RESULTS: After controlling for sex, age, and age of onset, robust sib-sib intraclass correlations were found for two of the four YBOCS factors: Factor IV (hoarding obsessions and compulsions (p = .001) and Factor I (aggressive, sexual, and religious obsessions, and checking compulsions; p = .002). Smaller, but still significant, familiality was found for Factor III (contamination/cleaning; p = .02) and Factor II (symmetry/ordering/arranging; p = .04). Limiting the sample to female subjects more than doubled the familiality estimates for Factor II (p = .003). Among potentially relevant comorbid conditions for genetic studies, bipolar I/II and major depressive disorder were strongly associated with Factor I (p < .001), whereas ADHD, alcohol dependence, and bulimia were associated with Factor II (p < .01). CONCLUSIONS: Factor-analyzed OCD symptom dimensions in sibling pairs with OCD are familial with some gender-dependence, exhibit relatively specific relationships to comorbid psychiatric disorders and thus may be useful as refined phenotypes for molecular genetic studies of OCD.


Subject(s)
Family Health , Obsessive-Compulsive Disorder/genetics , Obsessive-Compulsive Disorder/physiopathology , Sibling Relations , Siblings , Comorbidity , Factor Analysis, Statistical , Female , Humans , Male , Mental Disorders/epidemiology , Obsessive-Compulsive Disorder/epidemiology , Prevalence , Psychiatric Status Rating Scales/statistics & numerical data
18.
Am J Psychiatry ; 164(3): 493-9, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17329475

ABSTRACT

OBJECTIVE: Individuals with obsessive-compulsive disorder (OCD) who have compulsive hoarding behavior are clinically different from other OCD-affected individuals. The objective of this study was to determine whether there are chromosomal regions specifically linked to compulsive hoarding behavior in families with obsessive-compulsive disorder. METHODS: The authors used multipoint allele-sharing methods to assess for linkage in 219 multiplex OCD families collected as part of the OCD Collaborative Genetics Study. The authors treated compulsive hoarding as the phenotype of interest and also stratified families into those with and without two or more relatives affected with compulsive hoarding. RESULTS: Using compulsive hoarding as the phenotype, there was suggestive linkage to chromosome 14 at marker D14S588 (Kong and Cox logarithm of the odds ratio [LOD] [KAC(all)=2.9]). In families with two or more hoarding relatives, there was significant linkage of OCD to chromosome 14 at marker C14S1937 (KAC(all)=3.7), whereas in families with fewer than two hoarding relatives, there was suggestive linkage to chromosome 3 at marker D3S2398 (KAC(all)=2.9). CONCLUSIONS: The findings suggest that a region on chromosome 14 is linked with compulsive hoarding behavior in families with OCD.


Subject(s)
Chromosomes, Human, Pair 14/genetics , Family , Genetic Linkage/genetics , Obsessive-Compulsive Disorder/genetics , Pedigree , Chromosome Mapping , Chromosomes, Human, Pair 3/genetics , Female , Genetic Markers/genetics , Genotype , Humans , Male , Middle Aged , Obsessive-Compulsive Disorder/epidemiology , Phenotype
19.
Am J Psychiatry ; 164(2): 236-47, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17267786

ABSTRACT

OBJECTIVE: Mood-incongruent psychotic features in bipolar disorder may signify a more severe form of the illness and might represent phenotypic manifestations of susceptibility genes shared with schizophrenia. This study attempts to characterize clinical correlates, familial aggregation, and genetic linkage in subjects with these features. METHOD: Subjects were drawn from The National Institute of Mental Health (NIMH) Genetics Initiative Bipolar Disorder Collaborative cohort, consisting of 708 families recruited at 10 academic medical centers. Subjects with mood-incongruent and mood-congruent psychotic features were compared on clinical variables. Familial aggregation was tested using a proband-predictive model and generalized estimating equations. A genome-wide linkage scan incorporating a mood-incongruence covariate was performed. RESULTS: Mood-incongruent psychotic features were associated with an increased rate of hospitalization and attempted suicide. A proband with mood-incongruence predicted mood-incongruence in relatives with bipolar I disorder when compared with all other subjects and when compared with subjects with mood-congruent psychosis. The presence of mood-incongruent psychotic features increased evidence for linkage on chromosomes 13q21-33 and 2p11-q14. These logarithm of the odds ratio (LOD) scores and their increase from baseline met empirical genome-wide suggestive criteria for significance. CONCLUSIONS: Mood-incongruent psychotic features showed evidence of a more severe course, familial aggregation, and suggestive linkage to two chromosomal regions previously implicated in major mental illness susceptibility. The 13q21-33 finding supports prior evidence of bipolar disorder/schizophrenia overlap in this region, while the 2p11-q14 finding is, to the authors' knowledge, the first to suggest that this schizophrenia linkage region might also harbor a bipolar disorder susceptibility gene.


Subject(s)
Bipolar Disorder/diagnosis , Bipolar Disorder/genetics , Chromosomes, Human, Pair 13/genetics , Chromosomes, Human, Pair 2/genetics , Delusions/diagnosis , Family Health , Genetic Linkage/genetics , Hallucinations/diagnosis , Pedigree , Adult , Bipolar Disorder/psychology , Chromosome Mapping/statistics & numerical data , Cohort Studies , Delusions/genetics , Delusions/psychology , Depressive Disorder, Major/diagnosis , Depressive Disorder, Major/genetics , Depressive Disorder, Major/psychology , Female , Genetic Predisposition to Disease/genetics , Genotype , Hallucinations/genetics , Hallucinations/psychology , Humans , Lod Score , Male , Middle Aged , Models, Genetic , Phenotype , Schizophrenia/genetics , Severity of Illness Index
20.
Behav Res Ther ; 45(4): 673-86, 2007 Apr.
Article in English | MEDLINE | ID: mdl-16824483

ABSTRACT

Hoarding behavior occurs frequently in obsessive-compulsive disorder (OCD). Results from previous studies suggest that individuals with OCD who have hoarding symptoms are clinically different than non-hoarders and may represent a distinct clinical group. In the present study, we compared 235 hoarding to 389 non-hoarding participants, all of whom had OCD, collected in the course of the OCD Collaborative Genetics Study. We found that, compared to non-hoarding individuals, hoarders were more likely to have symmetry obsessions and repeating, counting, and ordering compulsions; poorer insight; more severe illness; difficulty initiating or completing tasks; and indecision. Hoarders had a greater prevalence of social phobia and generalized anxiety disorder. Hoarders also had a greater prevalence of obsessive-compulsive and dependent personality disorders. Five personality traits were independently associated with hoarding: miserliness, preoccupation with details, difficulty making decisions, odd behavior or appearance, and magical thinking. Hoarding and indecision were more prevalent in the relatives of hoarding than of non-hoarding probands. Hoarding in relatives was associated with indecision in probands, independently of proband hoarding status. The findings suggest that hoarding behavior may help differentiate a distinct clinical subgroup of people with OCD and may aggregate in some OCD families. Indecision may be a risk factor for hoarding in these families.


Subject(s)
Compulsive Behavior , Obsessive-Compulsive Disorder/psychology , Adolescent , Adult , Aged , Aged, 80 and over , Child , Decision Making , Female , Genetic Predisposition to Disease , Humans , Male , Middle Aged , Obsessive-Compulsive Disorder/genetics , Personality , Psychiatric Status Rating Scales
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