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1.
Proc Natl Acad Sci U S A ; 119(46): e2212406119, 2022 Nov 15.
Article in English | MEDLINE | ID: mdl-36346846

ABSTRACT

Defense against ultraviolet (UV) radiation exposure is essential for survival, especially in high-elevation species. Although some specific genes involved in UV response have been reported, the full view of UV defense mechanisms remains largely unexplored. Herein, we used integrated approaches to analyze UV responses in the highest-elevation frog, Nanorana parkeri. We show less damage and more efficient antioxidant activity in skin of this frog than those of its lower-elevation relatives after UV exposure. We also reveal genes related to UV defense and a corresponding temporal expression pattern in N. parkeri. Genomic and metabolomic analysis along with large-scale transcriptomic profiling revealed a time-dependent coordinated defense mechanism in N. parkeri. We also identified several microRNAs that play important regulatory roles, especially in decreasing the expression levels of cell cycle genes. Moreover, multiple defense genes (i.e., TYR for melanogenesis) exhibit positive selection with function-enhancing substitutions. Thus, both expression shifts and gene mutations contribute to UV adaptation in N. parkeri. Our work demonstrates a genetic framework for evolution of UV defense in a natural environment.


Subject(s)
Anura , Ultraviolet Rays , Animals , Anura/genetics , Skin , Gene Expression Profiling , Antioxidants
2.
J Org Chem ; 87(19): 13339-13345, 2022 Oct 07.
Article in English | MEDLINE | ID: mdl-36137272

ABSTRACT

A Co-catalyzed reductive cyclization of acrylate-containing 1,6-enynes is reported, providing an approach to construct five-membered carbocyclic and heterocyclic scaffolds containing enol ethers and all-carbon quaternary carbons. This novel process enables an E/Z mixture of 1,6-enynes to react with good functional group tolerance and good isolated yields, in an operationally simple manner.

3.
J Org Chem ; 85(23): 15686-15692, 2020 Dec 04.
Article in English | MEDLINE | ID: mdl-33119301

ABSTRACT

A metal-free intramolecular aminophosphination of sulfonamidoallenes with diarylphosphine oxides and Tf2O was developed. This method offers a general and practical procedure to construct valuable alkenylphosphine-substituted N-heterocycles via the bifunctionalization reaction of allenes in good yields under mild conditions.

4.
J Hum Genet ; 64(6): 535-543, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30944401

ABSTRACT

Insertion and deletion markers (InDels) have gained considerable attentions in population genetics and forensic research. In this study, we investigated genetic distributions of 30 InDels in Gansu Yugur and Guizhou Miao groups and evaluated their forensic application values. Genetic relationship analyses between Gansu Yugur, Guizhou Miao groups and other published populations were conducted based on these 30 InDels. Power of discrimination and power of exclusion in trio and duo cases of 30 InDels ranged from 0.3528 to 0.6247, 0.0937 to 0.1873, and 0.0219 to 0.1247 in Gansu Yugur group; and they ranged from 0.2579 to 0.6247, 0.0671 to 0.1874, and 0.0105 to 0.1247 in Guizhou Miao group. Obtained cumulative power of discrimination values indicated these InDels could be used for forensic individual identifications in both ethnic groups. Principal component analysis and phylogenetic reconstruction revealed that Gansu Yugur and Guizhou Miao groups had close affinities with their neighboring populations. Genetic structure analyses among these populations also indicated that studied Gansu Yugur and Guizhou Miao groups showed similar genetic structure with their neighboring populations. Further analyses of Y-STR, mtDNA, and ancestry informative markers should be conducted to better understand genetic backgrounds of Gansu Yugur and Guizhou Miao groups in the future.


Subject(s)
Chromosomes, Human, Y/genetics , DNA, Mitochondrial/genetics , Genetics, Population , INDEL Mutation/genetics , Alleles , Asian People/genetics , China , Ethnicity/genetics , Female , Forensic Sciences , Genetic Testing , Genetic Variation/genetics , Genotype , Haplotypes/genetics , Humans , Male
5.
Pediatr Transplant ; 21(4)2017 Jun.
Article in English | MEDLINE | ID: mdl-28333403

ABSTRACT

The conclusions on the association between cytotoxic T-lymphocyte antigen 4 (CTLA4) +49A/G gene polymorphism and acute rejection risk in renal transplantation are still debated. This meta-analysis was performed to update the association between CTLA4 +49A/G and acute rejection risk in renal transplantation. The association investigations were identified from PubMed and Cochrane Library, and eligible studies were included and synthesized using meta-analysis method. Fourteen reports were included into this meta-analysis for the association of CTLA4 A/G gene polymorphism and acute rejection risk in renal transplantation, consisting of 962 acute rejection patients and 2084 non-acute rejection controls. The association between CTLA4 G allele/GG genotype and acute rejection risk in renal transplantation was found in this meta-analysis (G allele: OR=1.21, 95% CI: 1.03-1.44, P=.02; GG genotype: OR=1.37, 95% CI: 1.10-1.69, P=.004). However, the AA genotype was not associated with acute rejection risk in renal transplantation. In conclusion, CTLA4 G allele/GG genotype is associated with the acute rejection risk in renal transplantation.


Subject(s)
Biomarkers, Tumor/genetics , CTLA-4 Antigen/genetics , Graft Rejection/genetics , Kidney Transplantation , Polymorphism, Single Nucleotide , Genotype , Humans , Models, Statistical , Odds Ratio , Risk Assessment , Risk Factors
6.
Pediatr Transplant ; 21(7)2017 Nov.
Article in English | MEDLINE | ID: mdl-28449371

ABSTRACT

Results on the relationship between CTLA4 -318C/T (rs5742909) gene polymorphism and risk of acute rejection in renal transplantation are still conflicting. This meta-analysis was performed to update the association between CTLA4 -318C/T and risk of acute rejection in renal transplantation. The association investigations were identified from PubMed and Cochrane Library, and eligible studies were included and synthesized using meta-analysis method. Twelve reports were included in this meta-analysis for the association of CTLA4 -318C/T gene polymorphism with acute rejection risk in renal transplantation, consisting of 728 acute rejection patients and 1628 non-acute rejection controls. The association between CTLA4 -318C/T gene polymorphism and acute rejection risk in renal transplantation for overall populations was not found in this meta-analysis (T allele: OR=0.96, 95% CI: 0.60-1.54, P=.88; TT genotype: OR=0.90, 95% CI: 0.47-1.71, P=.74; CC genotype: OR=1.00, 95% CI: 0.62-1.59, P=.98). Interestingly, T allele was associated with the risk of acute rejection in renal transplantation in African population. In conclusion, CTLA4 -318C/T gene polymorphism is not associated with the risk of acute rejection in renal transplantation in overall populations.


Subject(s)
CTLA-4 Antigen/genetics , Graft Rejection/genetics , Kidney Transplantation , Polymorphism, Genetic , Genetic Markers , Humans , Risk Factors
7.
Guang Pu Xue Yu Guang Pu Fen Xi ; 37(1): 129-34, 2017 01.
Article in Zh | MEDLINE | ID: mdl-30195280

ABSTRACT

The regional features, metallogenitic regularities and mineral composition of the hydrothermal sulphide ore have been preliminarily studied. According to the different mineralization period, the patterns of valuable minerals disseminated in ore are complicated, which causes the large changes in the properties of the sulphide ore. The different properties of the sulphide ore may increase the difficulty of the mineral processing and reduce the recovery rate of valuable minerals. Therefore a simple method for rapidly classification of sulphide ore is required to optimize mineral processing flowsheet. Laser Raman spectrometry, as an effective method to analyze the structure of the material is used to identify the component and structure of minerals. The research on the Laser Raman spectra of the large number of sulphide ore samples can reveal the reasons for the difference of the Raman spectra. A new method for classifying the complex sulphide ore using Raman spectroscopy is proposed. The experiment results demonstrate that the properties of the sulphide ore in different mineralization period vary greatly and the fluorescent scattering is mainly produced by gangue minerals. The measured Raman spectral after quenching the fluorescence scattering show the peaks of Raman spectra at 201.62, 242.54, 288.38 and 309.77 cm-1 can be used to identify this kind of complex sulphide ore. The raw ore can be divided into three categories based on the difference of the intensity of fluorescence scattering and the ratio of fluorescence and Raman intensity. The accuracy of the classification method is further validated by the industrial tests. The findings demonstrate the close relationship between Raman spectra and the properties of sulphide ore. The proposed method, which can fast classify the sulphide ore, don't need complex chemical pretreatment before spectra collection. Therefore, this method will have important application value for improving the efficiency of mineral processing.

8.
J Nat Prod ; 79(9): 2408-12, 2016 09 23.
Article in English | MEDLINE | ID: mdl-27579840

ABSTRACT

Absolute configurations of the three consecutive chiral centers in the cyclic depsipeptide microtermolide A have been tentatively assigned as 2‴R, 3‴R, and 4‴R. However, on the basis of a structural comparison with vinylamycin, another depsipeptide with a unique 4-amino-2,4-pentadienolate structure, the chiral centers could also be assigned as 2‴R, 3‴R, and 4‴S. Here, the first total synthesis of microtermolide A is reported and the configurations of the three consecutive chiral centers were confirmed to be 2‴R, 3‴R, and 4‴S. A similar approach was used to determine the analogous centers in microtermolide B as 2‴R, 3‴R, and 4‴S.


Subject(s)
Depsipeptides/chemistry , Bacterial Proteins/chemistry , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Stereoisomerism
9.
Electrophoresis ; 36(6): 930-6, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25488882

ABSTRACT

For forensic and population genetic purposes, a total of 125 unrelated volunteers' blood samples were collected from Chinese Bai ethnic minority group to analyze sequence variation of two hypervariable segments (HVS-I and HVS-II) in the mitochondrial DNA control region. Comparing the HVS-I and HVS-II sequences of the 125 Chinese Bais to the Anderson reference sequence, we found 86 polymorphic loci in HVS-I and 40 in HVS-II in mitochondrial DNA sequences of the Chinese Bai ethnic minority group, which defined 93 and 53 different haplotypes, respectively. Haplotype diversity and the mean pairwise differences were 0.992 ± 0.003 and 6.553 in HVS-I, and 0.877 ± 0.027 and 2.407 in HVS-II, respectively. We defined four macrohaplogroups R, M, N and D with the proportions ranging from 9.6% to 40.0%. With the analysis of the hypervariable domain from nucleotide 16 180-16 193 in HVS-I, our study revealed new haplotypes of sequence variations. In addition, the Fst metric, phylogenetic tree, and principal component analysis demonstrated a close genetic relationship between the Bai group and Chinese Han populations from South China, Changsha, and Guangdong. The results support that the Bai group is a multiorigin ethnic minority that has merged with the Chinese Han population.


Subject(s)
Asian People/genetics , DNA, Mitochondrial/genetics , Ethnicity/genetics , Polymorphism, Single Nucleotide/genetics , China , Haplotypes , Humans , Phylogeny , Principal Component Analysis
10.
Electrophoresis ; 36(4): 626-32, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25421451

ABSTRACT

The Uygur ethnic minority is the largest ethnic group in the Xinjiang Uygur Autonomous Region of China, and is a precious resource for the study of ethnogeny and forensic biology. Previous studies have focused on the genetic background of the Uygur group, however, the patrilineal descent of the group is still unclear. In this study, we investigated the genetic diversity of 24 Y-STR loci in the Uygur group and analyzed the population differentiations as well as the genetic relationships between the Uygur group and other previously reported populations using 17 Y-filer loci. According to haplotypic analysis of the 24 Y-STR loci in 109 Uygur individuals, 104 different haplotypes were obtained, 99 of which were unique. The haplotypic diversity and discrimination capacity of these 24 Y-STR loci in Uygur group were 0.9992 and 0.9541, respectively. An additional 7 loci (DYS388, DYS444, DYS447, DYS449, DYS522, and DYS527a,b) showed high genetic diversity and improved the overall discrimination capacity of the 24 Y-STR system. Pairwise Fst and neighbor-joining analysis showed that the Uygur group was genetically close to the Han populations from different regions.


Subject(s)
Asian People/genetics , Chromosomes, Human, Y , Phylogeny , Polymorphism, Genetic , China/ethnology , Gene Frequency , Genetic Variation , Genetics, Population , Haplotypes , Humans , Male , Microsatellite Repeats
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