Search details
1.
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters.
Cell
; 167(5): 1369-1384.e19, 2016 11 17.
Article
in English
| MEDLINE | ID: mdl-27863249
2.
Perspectives on ENCODE.
Nature
; 583(7818): 693-698, 2020 07.
Article
in English
| MEDLINE | ID: mdl-32728248
3.
Patient-derived organoid biobank identifies epigenetic dysregulation of intestinal epithelial MHC-I as a novel mechanism in severe Crohn's Disease.
Gut
; 2024 Jun 10.
Article
in English
| MEDLINE | ID: mdl-38857990
4.
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.
Nucleic Acids Res
; 50(D1): D765-D770, 2022 01 07.
Article
in English
| MEDLINE | ID: mdl-34634797
5.
Progress, Challenges, and Surprises in Annotating the Human Genome.
Annu Rev Genomics Hum Genet
; 21: 55-79, 2020 08 31.
Article
in English
| MEDLINE | ID: mdl-32421357
6.
Author Correction: Perspectives on ENCODE.
Nature
; 605(7909): E4, 2022 May.
Article
in English
| MEDLINE | ID: mdl-35474002
7.
Transcription and DNA Methylation Patterns of Blood-Derived CD8+ T Cells Are Associated With Age and Inflammatory Bowel Disease But Do Not Predict Prognosis.
Gastroenterology
; 160(1): 232-244.e7, 2021 01.
Article
in English
| MEDLINE | ID: mdl-32814113
8.
Sequence tube maps: making graph genomes intuitive to commuters.
Bioinformatics
; 35(24): 5318-5320, 2019 12 15.
Article
in English
| MEDLINE | ID: mdl-31368484
9.
Ensembl 2018.
Nucleic Acids Res
; 46(D1): D754-D761, 2018 01 04.
Article
in English
| MEDLINE | ID: mdl-29155950
10.
Ensembl 2017.
Nucleic Acids Res
; 45(D1): D635-D642, 2017 01 04.
Article
in English
| MEDLINE | ID: mdl-27899575
11.
Ensembl 2016.
Nucleic Acids Res
; 44(D1): D710-6, 2016 Jan 04.
Article
in English
| MEDLINE | ID: mdl-26687719
12.
Ensembl 2015.
Nucleic Acids Res
; 43(Database issue): D662-9, 2015 Jan.
Article
in English
| MEDLINE | ID: mdl-25352552
13.
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.
BMC Bioinformatics
; 17(1): 400, 2016 Sep 29.
Article
in English
| MEDLINE | ID: mdl-27687569
14.
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.
Bioinformatics
; 30(7): 1008-9, 2014 Apr 01.
Article
in English
| MEDLINE | ID: mdl-24363377
15.
A unifying model of genome evolution under parsimony.
BMC Bioinformatics
; 15: 206, 2014 Jun 19.
Article
in English
| MEDLINE | ID: mdl-24946830
16.
Assemblathon 1: a competitive assessment of de novo short read assembly methods.
Genome Res
; 21(12): 2224-41, 2011 Dec.
Article
in English
| MEDLINE | ID: mdl-21926179
17.
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.
Bioinformatics
; 28(8): 1086-92, 2012 Apr 15.
Article
in English
| MEDLINE | ID: mdl-22368243
18.
The gene regulation knowledge commons: the action area of GREEKC.
Biochim Biophys Acta Gene Regul Mech
; 1865(1): 194768, 2022 01.
Article
in English
| MEDLINE | ID: mdl-34757206
19.
Culture-Associated DNA Methylation Changes Impact on Cellular Function of Human Intestinal Organoids.
Cell Mol Gastroenterol Hepatol
; 14(6): 1295-1310, 2022.
Article
in English
| MEDLINE | ID: mdl-36038072
20.
A compendium of uniformly processed human gene expression and splicing quantitative trait loci.
Nat Genet
; 53(9): 1290-1299, 2021 09.
Article
in English
| MEDLINE | ID: mdl-34493866