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1.
Nutr Cancer ; 76(7): 619-627, 2024.
Article in English | MEDLINE | ID: mdl-38775076

ABSTRACT

Vitamin B12 plays a role in DNA methylation, influencing the 1-carbon cycle; However, its effect on colorectal cancer (CRC) mortality remains uncertain. This study assessed the relationship between vitamin B12 intake and all-cause and cancer-specific mortality among CRC patients. We analyzed data from the NHANES from 1999 to 2018, using multivariable Cox regression, competing risk model, Kaplan-Meier survival curves, and stratified analysis with interaction effects. The studied involved 4,554 cancer patients (mean age 65.8 years, 47.6% males). Results from multivariate Cox regression indicated that each additional 1 mcg/day of dietary vitamin B12 independently increased the risk of all-cause (HR, 1.07; 95% CI: 1.04-1.09, p < 0.001) and cancer-specific mortality (HR, 1.04; 95% CI, 1.02-1.06; p < 0.001). Kaplan-Meier curves indicated a higher risk of all-cause mortality with increased vitamin B12 intake (Log rank p = 0.01). Subgroup analysis suggested that higher vitamin B12 intake correlated with increased all-cause mortality risk, especially in individuals with higher protein (HR, 1.04; 95% CI, 1.02-1.06; p = 0.019) or carbohydrate intake (HR, 1.03; 95% CI, 1.01-1.05; p = 0.04). Thus, higher vitamin B12 intake correlates with increased all-cause and cancer-specific mortality in CRC patients, particularly those with higher protein or carbohydrate intake.


Subject(s)
Colorectal Neoplasms , Nutrition Surveys , Vitamin B 12 , Humans , Colorectal Neoplasms/mortality , Male , Vitamin B 12/administration & dosage , Female , Aged , Middle Aged , United States/epidemiology , Diet , Proportional Hazards Models , Kaplan-Meier Estimate , Risk Factors
2.
Proc Natl Acad Sci U S A ; 118(52)2021 12 28.
Article in English | MEDLINE | ID: mdl-34930840

ABSTRACT

Thymol and carvacrol are phenolic monoterpenes found in thyme, oregano, and several other species of the Lamiaceae. Long valued for their smell and taste, these substances also have antibacterial and anti-spasmolytic properties. They are also suggested to be precursors of thymohydroquinone and thymoquinone, monoterpenes with anti-inflammatory, antioxidant, and antitumor activities. Thymol and carvacrol biosynthesis has been proposed to proceed by the cyclization of geranyl diphosphate to γ-terpinene, followed by a series of oxidations via p-cymene. Here, we show that γ-terpinene is oxidized by cytochrome P450 monooxygenases (P450s) of the CYP71D subfamily to produce unstable cyclohexadienol intermediates, which are then dehydrogenated by a short-chain dehydrogenase/reductase (SDR) to the corresponding ketones. The subsequent formation of the aromatic compounds occurs via keto-enol tautomerisms. Combining these enzymes with γ-terpinene in in vitro assays or in vivo in Nicotiana benthamiana yielded thymol and carvacrol as products. In the absence of the SDRs, only p-cymene was formed by rearrangement of the cyclohexadienol intermediates. The nature of these unstable intermediates was inferred from reactions with the γ-terpinene isomer limonene and by analogy to reactions catalyzed by related enzymes. We also identified and characterized two P450s of the CYP76S and CYP736A subfamilies that catalyze the hydroxylation of thymol and carvacrol to thymohydroquinone when heterologously expressed in yeast and N. benthamiana Our findings alter previous views of thymol and carvacrol formation, identify the enzymes involved in the biosynthesis of these phenolic monoterpenes and thymohydroquinone in the Lamiaceae, and provide targets for metabolic engineering of high-value terpenes in plants.


Subject(s)
Cymenes/metabolism , Cytochrome P-450 Enzyme System/metabolism , Lamiaceae/metabolism , Short Chain Dehydrogenase-Reductases/metabolism , Thymol/analogs & derivatives , Thymol/metabolism , Cymenes/chemistry , Cytochrome P-450 Enzyme System/genetics , Lamiaceae/enzymology , Lamiaceae/genetics , Metabolic Networks and Pathways/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Short Chain Dehydrogenase-Reductases/genetics , Thymol/chemistry
3.
Opt Express ; 30(9): 14748-14758, 2022 Apr 25.
Article in English | MEDLINE | ID: mdl-35473212

ABSTRACT

The plasmon resonances of grating-gated AlN/GaN HEMTs can occur in wide frequency regions at mid-infrared frequencies. However, the lack of polarization properties research in grating-gated AlN/GaN HEMTs prevents the application potential. In order to solve the problem, the polarization properties in grating-gated AlN/GaN HEMTs at mid-infrared frequencies were studied in the paper. After using the optical transfer matrix method to calculate the dispersion curves in grating-gated AlN/GaN HEMTs, the plasmon polaritons in conductive channel and phonon polaritons in GaN layer occur under TM incident waves rather than TE incident waves. The phenomenon illustrates the potential of polarization-selectivity has existed in grating-gated AlN/GaN HEMTs. To study the polarization properties of grating-gated AlN/GaN HEMTs in detail, the electric field distribution and transmission properties of the structure were simulated in COMSOL. The results show the excellent polarization-selectivity at mid-infrared frequencies in grating-gated AlN/GaN HEMTs. The studies of these characteristics indicate the vast potential for using grating-gated AlN/GaN HEMTs to design mid-infrared polarizers, mid-infrared polarization state modulators and other devices in the future.

4.
Andrologia ; 54(2): e14292, 2022 Mar.
Article in English | MEDLINE | ID: mdl-34700362

ABSTRACT

A variety of mutations in the androgen receptor (AR) gene are linked to androgen insensitivity syndrome (AIS). AIS is the most common specific cause of 46, XY disorder in sex development. Here, we reported a patient which presented as a female with 46, XY karyotype and normal female external genitalia. The patient was diagnosed with complete AIS caused by a novel mutation (NM_000044, c.2678-2726del, p. Pro893Leufs*35) in the AR gene. Targeted exome sequencing was used to detect the patient's androgen receptor gene mutations. Sanger sequencing was used to validate the mutation. This study showed that a novel mutation of the AR gene can cause complete AIS; the study also broadened the AR mutation spectrum and indicated that targeted exome sequencing could help facilitate the diagnosis of complicated disorders in sexual development.


Subject(s)
Androgen-Insensitivity Syndrome , Androgen-Insensitivity Syndrome/diagnosis , Androgen-Insensitivity Syndrome/genetics , Female , Frameshift Mutation , Humans , Karyotyping , Male , Mutation , Receptors, Androgen/genetics
5.
Scand J Gastroenterol ; 55(9): 1063-1071, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32713220

ABSTRACT

OBJECTIVE: To investigate the clinicopathological and molecular features of colorectal cancer (CRC) with synchronous adenoma and to describe features of synchronous adenomas in CRC patients. METHODS: Single-centre retrospective cohort of 180 patients were included. The clinicopathological and endoscopic data were collected. The expression mismatch repair (MMR) proteins were detected by immunohistochemistry. The determination of microsatellite instability (MSI) was performed by multiple fluorescence PCR, and the mutations of genes were detected by real-time PCR. RESULTS: Among all cases, 49 were diagnosed as CRC with synchronous adenoma, and 131 were diagnosed as solitary CRC. Some of the differences between the groups are: higher incidence was found in male (71.4 vs. 52.6%, p = .023) and in patients with habit drinking (34.7 vs. 14.5%, p = .030) and with other neoplastic diseases (42.7 vs. 26%, p = .028). Less tumors in the synchronous group were diagnosed as stage III and IV than in the solitary group (28.6 vs. 45%, p = .045). One and four mutant subtypes of KRAS gene mutations were detected insynchronous group and solitary group respectively.The prevalence of BRAF mutations in solitary group was higher than that in the synchronous group (7.4 vs. 0%, p = .045). A total of 123 adenomas were found in synchronous group and they tend to be smaller than 10 mm (74%). CONCLUSION: Gender, a habit of drinking and other neoplastic diseases are risk factors for the development of a synchronous adenoma. With a low rate of BRAF mutations, the responses to monoclonal antibody and prognosis of patients with synchronous adenomas may be better than that of solitary CRC.


Subject(s)
Adenoma , Colorectal Neoplasms , Adenoma/genetics , Colorectal Neoplasms/genetics , Humans , Male , Microsatellite Instability , Mutation , Proto-Oncogene Proteins B-raf/genetics , Retrospective Studies
6.
Nucleic Acids Res ; 46(5): 2380-2397, 2018 03 16.
Article in English | MEDLINE | ID: mdl-29365184

ABSTRACT

Acquisition and rearrangement of host genes by transposable elements (TEs) is an important mechanism to increase gene diversity as exemplified by the ∼3000 Pack-Mutator-like TEs in the rice genome which have acquired gene sequences (Pack-MULEs), yet remain enigmatic. To identify signatures of functioning Pack-MULEs and Pack-MULE evolution, we generated transcriptome, translatome, and epigenome datasets and compared Pack-MULEs to genes and other TE families. Approximately 40% of Pack-MULEs were transcribed with 9% having translation evidence, clearly distinguishing them from other TEs. Pack-MULEs exhibited a unique expression profile associated with specificity in reproductive tissues that may be associated with seed traits. Expressed Pack-MULEs resemble regular protein-coding genes as exhibited by a low level of DNA methylation, association with active histone marks and DNase I hypersensitive sites, and an absence of repressive histone marks, suggesting that a substantial fraction of Pack-MULEs are potentially functional in vivo. Interestingly, the expression capacity of Pack-MULEs is independent of the local genomic environment, and the insertion and expression of Pack-MULEs may have altered the local chromosomal expression pattern as well as counteracted the impact of recombination on chromosomal base composition, which has profound consequences on the evolution of chromosome structure.


Subject(s)
Chromosomes, Plant/chemistry , DNA Transposable Elements , Epigenesis, Genetic , Gene Expression Regulation, Plant , Oryza/genetics , Base Composition , Deoxyribonuclease I , Histone Code , Protein Biosynthesis , Transcription, Genetic
7.
Chembiochem ; 20(1): 83-87, 2019 01 02.
Article in English | MEDLINE | ID: mdl-30300974

ABSTRACT

Genome mining is a routine technique in microbes for discovering biosynthetic pathways. In plants, however, genomic information is not commonly used to identify novel biosynthesis genes. Here, we present the genome of the medicinal plant and oxindole monoterpene indole alkaloid (MIA) producer Gelsemium sempervirens (Gelsemiaceae). A gene cluster from Catharanthus roseus, which is utilized at least six enzymatic steps downstream from the last common intermediate shared between the two plant alkaloid types, is found in G. sempervirens, although the corresponding enzymes act on entirely different substrates. This study provides insights into the common genomic context of MIA pathways and is an important milestone in the further elucidation of the Gelsemium oxindole alkaloid pathway.


Subject(s)
Gelsemium/genetics , Genes, Plant , Indole Alkaloids/metabolism , Monoterpenes/metabolism , Multigene Family , Catharanthus/genetics , Genetic Association Studies , Genome , Plant Roots/genetics
8.
Molecules ; 25(1)2019 Dec 28.
Article in English | MEDLINE | ID: mdl-31905655

ABSTRACT

A facile approach was successfully developed for synthesis of cellulose nanocrystals (CNC)-supported magnetic CuFe2O4@Ag@ZIF-8 nanospheres which consist of a paramagnetic CuFe2O4@Ag core and porous ZIF-8 shell. The CuFe2O4 nanoparticles (NPs) were first prepared in the presence of CNC and dispersant. Ag NPs were then deposited on the CuFe2O4/CNC composites via an in situ reduction directed by dopamine polymerization (PDA). The CuFe2O4/CNC@Ag@ZIF-8 nanocomposite was characterized by TEM, FTIR, XRD, N2 adsorption-desorption isotherms, VSM, and XPS. Catalytic studies showed that the CuFe2O4/CNC@Ag@ZIF-8 catalyst had much higher catalytic activity than CuFe2O4@Ag catalyst with the rate constant of 0.64 min-1. Because of the integration of ZIF-8 with CuFe2O4/CNC@Ag that combines the advantaged of each component, the nanocomposites were demonstrated to have an enhanced catalytic activity in heterogeneous catalysis. Therefore, these results demonstrate a new method for the fabrication of CNC-supported magnetic core-shell catalysts, which display great potential for application in biocatalysis and environmental chemistry.


Subject(s)
Cellulose/chemistry , Ferrosoferric Oxide/chemistry , Nanocomposites/chemistry , Nanoparticles/chemistry , Catalysis , Porosity
9.
Plant Cell ; 27(1): 132-48, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25587002

ABSTRACT

Mutator-like transposable elements (MULEs) are widespread in plants and are well known for their high transposition activity as well as their ability to duplicate and amplify host gene fragments. Despite their abundance and importance, few active MULEs have been identified. In this study, we demonstrated that a rice (Oryza sativa) MULE, Os3378, is capable of excising and reinserting in yeast (Saccharomyces cerevisiae), suggesting that yeast harbors all the host factors for the transposition of MULEs. The transposition activity induced by the wild-type transposase is low but can be altered by modification of the transposase sequence, including deletion, fusion, and substitution. Particularly, fusion of a fluorescent protein to the transposase enhanced the transposition activity, representing another approach to manipulate transposases. Moreover, we identified a critical region in the transposase where the net charge of the amino acids seems to be important for activity. Finally, transposition efficiency is also influenced by the element and its flanking sequences (i.e., small elements are more competent than their large counterparts). Perfect target site duplication is favorable, but not required, for precise excision. In addition to the potential application in functional genomics, this study provides the foundation for further studies of the transposition mechanism of MULEs.


Subject(s)
Oryza/metabolism , Plant Proteins/metabolism , Saccharomyces cerevisiae/metabolism , DNA Transposable Elements/genetics , Oryza/genetics , Plant Proteins/genetics , Saccharomyces cerevisiae/genetics
10.
Am J Respir Crit Care Med ; 196(12): 1559-1570, 2017 12 15.
Article in English | MEDLINE | ID: mdl-28850247

ABSTRACT

RATIONALE: Efficient elimination of pathogenic bacteria is a critical determinant in the outcome of sepsis. Sphingosine-1-phosphate receptor 3 (S1PR3) mediates multiple aspects of the inflammatory response during sepsis, but whether S1PR3 signaling is necessary for eliminating the invading pathogens remains unknown. OBJECTIVES: To investigate the role of S1PR3 in antibacterial immunity during sepsis. METHODS: Loss- and gain-of-function experiments were performed using cell and murine models. S1PR3 levels were determined in patients with sepsis and healthy volunteers. MEASUREMENTS AND MAIN RESULTS: S1PR3 protein levels were up-regulated in macrophages upon bacterial stimulation. S1pr3-/- mice showed increased mortality and increased bacterial burden in multiple models of sepsis. The transfer of wild-type bone marrow-derived macrophages rescued S1pr3-/- mice from lethal sepsis. S1PR3-overexpressing macrophages further ameliorated the mortality rate of sepsis. Loss of S1PR3 led to markedly decreased bacterial killing in macrophages. Enhancing endogenous S1PR3 activity using a peptide agonist potentiated the macrophage bactericidal function and improved survival rates in multiple models of sepsis. Mechanically, the reactive oxygen species levels were decreased and phagosome maturation was delayed in S1pr3-/- macrophages due to impaired recruitment of vacuolar protein-sorting 34 to the phagosomes. In addition, S1RP3 expression levels were elevated in monocytes from patients with sepsis. Higher levels of monocytic S1PR3 were associated with efficient intracellular bactericidal activity, better immune status, and preferable outcomes. CONCLUSIONS: S1PR3 signaling drives bacterial killing and is essential for survival in bacterial sepsis. Interventions targeting S1PR3 signaling could have translational implications for manipulating the innate immune response to combat pathogens.


Subject(s)
Cell Death/immunology , Receptors, Lysosphingolipid/genetics , Receptors, Lysosphingolipid/immunology , Sepsis/immunology , Signal Transduction/immunology , Animals , Cell Death/genetics , Disease Models, Animal , Disease-Free Survival , Humans , Mice , Signal Transduction/genetics , Sphingosine-1-Phosphate Receptors , Up-Regulation/genetics , Up-Regulation/immunology
11.
BMC Bioinformatics ; 18(1): 452, 2017 Oct 13.
Article in English | MEDLINE | ID: mdl-29029599

ABSTRACT

BACKGROUND: Recent advances in omics technology have produced a large amount of liver-related data. A comprehensive and up-to-date source of liver-related data is needed to allow biologists to access the latest data. However, current liver-related data sources each cover only a specific part of the liver. It is difficult for them to keep pace with the rapid increase of liver-related data available at those data resources. Integrating diverse liver-related data is a critical yet formidable challenge, as it requires sustained human effort. RESULTS: We present LiverWiki, a first wiki-based database that integrates liver-related genes, homolog genes, gene expressions in microarray datasets and RNA-Seq datasets, proteins, protein interactions, post-translational modifications, associated pathways, diseases, metabolites identified in the metabolomics datasets, and literatures into an easily accessible and searchable resource for community-driven sharing. LiverWiki houses information in a total of 141,897 content pages, including 19,787 liver-related gene pages, 17,077 homolog gene pages, 50,251 liver-related protein pages, 36,122 gene expression pages, 2067 metabolites identified in the metabolomics datasets, 16,366 disease-related molecules, and 227 liver disease pages. Other than assisting users in searching, browsing, reviewing, refining the contents on LiverWiki, the most important contribution of LiverWiki is to allow the community to create and update biological data of liver in visible and editable tables. This integrates newly produced data with existing knowledge. Implemented in mediawiki, LiverWiki provides powerful extensions to support community contributions. CONCLUSIONS: The main goal of LiverWiki is to provide the research community with comprehensive liver-related data, as well as to allow the research community to share their liver-related data flexibly and efficiently. It also enables rapid sharing new discoveries by allowing the discoveries to be integrated and shared immediately, rather than relying on expert curators. The database is available online at http://liverwiki.hupo.org.cn /.


Subject(s)
Databases, Factual , Internet , Liver/metabolism , Humans , Information Storage and Retrieval , Liver Diseases/pathology , User-Computer Interface
12.
Biochim Biophys Acta ; 1859(2): 366-80, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26709091

ABSTRACT

The ultimate source of evolution is mutation. As the largest component in plant genomes, transposable elements (TEs) create numerous types of mutations that cannot be mimicked by other genetic mechanisms. When TEs insert into genomic sequences, they influence the expression of nearby genes as well as genes unlinked to the insertion. TEs can duplicate, mobilize, and recombine normal genes or gene fragments, with the potential to generate new genes or modify the structure of existing genes. TEs also donate their transposase coding regions for cellular functions in a process called TE domestication. Despite the host defense against TE activity, a subset of TEs survived and thrived through discreet selection of transposition activity, target site, element size, and the internal sequence. Finally, TEs have established strategies to reduce the efficacy of host defense system by increasing the cost of silencing TEs. This review discusses the recent progress in the area of plant TEs with a focus on the interaction between TEs and genes.


Subject(s)
DNA Transposable Elements/genetics , Evolution, Molecular , Genome, Plant , Gene Expression Regulation, Plant , Genes, Plant , Mutation/genetics
13.
Inorg Chem ; 56(22): 14053-14059, 2017 Nov 20.
Article in English | MEDLINE | ID: mdl-29095603

ABSTRACT

The high-nuclearity polyoxovanadate-based carboxylate derivative K6H[VV17VIV12(OH)4O60(OOC(CH2)4COO)8]·nH2O (1) has been successfully synthesized by conventional aqueous methods and structurally characterized. The [VV17VIV12(OH)4O60(OOC(CH2)4COO)8]7- polyanion is built up from three cages: one {VV17(OH)4O44} cage and two identical [(VIV3O6)2(OOC(CH2)4COO)4]8- cages. Of the three cages, the {VV17(OH)4O44} is a purely inorganic polyoxovanadate cluster, whereas each of the [(VIV3O6)2(OOC(CH2)4COO)4]8- cages is a vanadium-based organic-inorganic hybrid cluster framed via four adipate ligands linking simultaneously to two triangular {V3} units. The two [(VIV3O6)2(OOC(CH2)4COO)4]8- cages are covalently attached to the central {VV17(OH)4O44} cage via V-O-V bonds in a linear arrangement, resulting in a {V29}-based hybrid cluster skeleton. The catalytic properties of compound 1 for the oxidation of sulfides by tert-butyl hydroperoxide were investigated, and the result indicates that 1 exhibits excellent catalytic activity for the oxidation of sulfides under mild conditions.

15.
J AOAC Int ; 98(1): 225-9, 2015.
Article in English | MEDLINE | ID: mdl-25857902

ABSTRACT

The content of mononuclear Al (Ala%) changed with its determination time (ta) under different dosages of Ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid, [Ferron]), and the change of Ala% with [Ferron] at different ta was systematically investigated for the first time. Thus, the most appropriate ta was found with the optimal [Ferron]. Also, the judgment of the platform (flat or level portion) of the complete reaction on the absorption-time curve determined in the hydroxyl polyaluminum solution by Ferron timed spectrophotometry (Ferron assay) was first digitized. The time point (tb) of complete reaction between the medium polyaluminum (Alb) and Ferron reagent depended on the reaction extent, and time could not be used only to judge. Thus, the tb was accurately determined and reduced to half of original, which improved the experiment efficiency significantly. The Ferron assay was completely optimized.


Subject(s)
Aluminum/chemistry , Spectrum Analysis/methods , Time Factors , Water Pollutants, Chemical/chemistry
16.
Plant Biotechnol J ; 12(9): 1319-28, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25132092

ABSTRACT

Small interfering RNAs (siRNAs) are silencing signals in plants. Virus-resistant transgenic rootstocks developed through siRNA-mediated gene silencing may enhance virus resistance of nontransgenic scions via siRNAs transported from the transgenic rootstocks. However, convincing evidence of rootstock-to-scion movement of siRNAs of exogenous genes in woody plants is still lacking. To determine whether exogenous siRNAs can be transferred, nontransgenic sweet cherry (scions) was grafted on transgenic cherry rootstocks (TRs), which was transformed with an RNA interference (RNAi) vector expressing short hairpin RNAs of the genomic RNA3 of Prunus necrotic ringspot virus (PNRSV-hpRNA). Small RNA sequencing was conducted using bud tissues of TRs and those of grafted (rootstock/scion) trees, locating at about 1.2 m above the graft unions. Comparison of the siRNA profiles revealed that the PNRSV-hpRNA was efficient in producing siRNAs and eliminating PNRSV in the TRs. Furthermore, our study confirmed, for the first time, the long-distance (1.2 m) transfer of PNRSV-hpRNA-derived siRNAs from the transgenic rootstock to the nontransgenic scion in woody plants. Inoculation of nontransgenic scions with PNRSV revealed that the transferred siRNAs enhanced PNRSV resistance of the scions grafted on the TRs. Collectively, these findings provide the foundation for 'using transgenic rootstocks to produce products of nontransgenic scions in fruit trees'.


Subject(s)
Disease Resistance/genetics , Plant Diseases/immunology , Plant Roots/genetics , Prunus/immunology , Prunus/virology , RNA, Small Interfering/metabolism , Transgenes/genetics , DNA, Bacterial/genetics , Genome, Viral , Plant Diseases/genetics , Plant Diseases/virology , Plant Viruses , Plants, Genetically Modified , Prunus/genetics
17.
Plant Physiol ; 163(3): 1419-32, 2013 Nov.
Article in English | MEDLINE | ID: mdl-24028844

ABSTRACT

The process of gene duplication followed by sequence and functional divergence is important for the generation of new genes. Pack-MULEs, nonautonomous Mutator-like elements (MULEs) that carry genic sequence(s), are potentially involved in generating new open reading frames and regulating parental gene expression. These elements are identified in many plant genomes and are most abundant in rice (Oryza sativa). Despite the abundance of Pack-MULEs, the mechanism by which parental genes are captured by Pack-MULEs remains largely unknown. In this study, we identified all MULEs in rice and examined factors likely important for sequence acquisition. Terminal inverted repeat MULEs are the predominant MULE type and account for the majority of the Pack-MULEs. In addition to genic sequences, rice MULEs capture guanine-cytosine (GC)-rich intergenic sequences, albeit at a much lower frequency. MULEs carrying nontransposon sequences have longer terminal inverted repeats and higher GC content in terminal and subterminal regions. An overrepresentation of genes with known functions and genes with orthologs among parental genes of Pack-MULEs is observed in rice, maize (Zea mays), and Arabidopsis (Arabidopsis thaliana), suggesting preferential acquisition for bona fide genes by these elements. Pack-MULEs selectively acquire/retain parental sequences through a combined effect of GC content and breadth of expression, with GC content playing a stronger role. Increased GC content and number of tissues with detectable expression result in higher chances of a gene being acquired by Pack-MULEs. Such selective acquisition/retention provides these elements greater chances of carrying functional sequences that may provide new genetic resources for the evolution of new genes or the modification of existing genes.


Subject(s)
Base Composition/genetics , DNA Transposable Elements/genetics , DNA, Plant/genetics , Genome, Plant/genetics , Oryza/genetics , Arabidopsis/genetics , Base Sequence , GC Rich Sequence/genetics , Gene Expression Regulation, Plant , Molecular Sequence Data , Mutagenesis, Insertional , Open Reading Frames/genetics , Terminal Repeat Sequences/genetics , Zea mays/genetics
18.
BMC Anesthesiol ; 14: 67, 2014.
Article in English | MEDLINE | ID: mdl-25126004

ABSTRACT

BACKGROUND: Acute lung injury (ALI) induced by cardiopulmonary bypass (CPB, CPB-ALI) is a common and serious complication after cardiac surgery. And infants and young children are more prone to CPB-ALI. The purpose of this study was to investigate the perioperative changes of plasma gelsolin (pGSN) in patients below 3 years of age with cardiac surgeries and CPB, and determine whether pGSN are associated with the occurrence and severity of CPB-ALI. METHODS: Seventy-seven consecutive patients ≤3 years of age with congenital heart diseases (CHD) performed on open heart surgery with CPB were finally enrolled, and assigned to ALI and non-ALI groups according to the American-European Consensus Criteria. Plasma concentrations of gelsolin and total protein were measured at following 8 time points: before CPB (a), after CPB (b), 2 hours after CPB (c), 6 hours after CPB (d), 12 hours after CPB (e), 24 hours after CPB (f), 48 hours after CPB (g) and 72 hours after CPB (h). RESULTS: Twenty-seven (35.1%) patients developed CPB-ALI in the study, including eleven (14.3%) patients with ARDS. The earliest significant drop of pGSN and normalized pGSN (pGSNN) of ALI group both occurred at 6 hours after CPB (p = 0.04 and p < 0.01), which was much earlier than those of non-ALI group (48 hours, p = 0.03 and 24 hours, p < 0.01); PGSN of ALI group before CPB and 6 hours after CPB were both significantly lower than those of non-ALI group (p < 0.01); PGSNN of ALI group before CPB and 6 hours after CPB were both significantly lower than those of non-ALI group (p < 0.01, p = 0.04); PGSN before CPB was the only independent risk factor predicting the occurrence of CPB-ALI (OR, 1.023; 95% CI, 1.007-1.039; p < 0.01) with an AUC of 0.753 (95% CI, 0.626-0.880); The optimal cutoff value of pGSN before CPB was 264.2 mg/L, with a sensitivity of 58.3% and a specificity 94.7%. And lower pGSN before CPB was significantly associated with the severity of CS-AKI (r = -0.45, p < 0.01). CONCLUSIONS: Patients developing CPB-ALI had lower plasma gelsolin reservoir and a much more amount and rapid consumption of plasma gelsolin early after operation. PGSN before CPB was an early and sensitive predictor of CPB-ALI in infants and young children undergoing cardiac surgery, and was negatively correlated with the severity of CPB-ALI.


Subject(s)
Acute Lung Injury/blood , Cardiopulmonary Bypass/adverse effects , Gelsolin/blood , Acute Lung Injury/etiology , Blood Proteins/analysis , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Pilot Projects , Predictive Value of Tests , Risk Factors , Systemic Inflammatory Response Syndrome/blood , Treatment Outcome
19.
J Pediatr Surg ; 2024 Mar 27.
Article in English | MEDLINE | ID: mdl-38631999

ABSTRACT

BACKGROUND: To analyze the clinical characteristics of ureteropelvic junction obstruction (UPJO) caused by crossing vessels (CV) in infants and young children. METHODS: A retrospective analysis was performed on children with UPJO who underwent primary surgery. Patients were classified into laparoscopic pyeloplasty (LP) and open pyeloplasty (OP) groups and classified as ≤3 or >3 (years old) groups. Children with CV-caused UPJO were identified. RESULTS: A total of 747 patients were included. Ninety cases of CV were identified. The CV discovery rate was higher in the LP group (78/457, 17.1%) than in the OP group (12/290, 4.1%) (P < 0.001). In the ≤3 group, the CV discovery rate in the LP group (27/144, 18.8%) was higher than that in the OP group (11/274, 4.0%) (P < 0.001). In the LP group, there was no significant difference between ≤3 (27/144, 18.8%) and >3 (51/313, 16.3%) groups in the CV discovery rate. The rate in children with UPJO was not significantly different at any age (P > 0.05). Progressive aggravation of hydronephrosis (21/27, 77.8%) and symptomatic hydronephrosis (44/51, 86.3%) were the main surgical indications in the ≤3 and > 3 groups, respectively. There were no preoperatively confirmed cases of CV in the ≤3 group. In the OP group, five patients underwent reoperation, three of whom were due to failure to detect CV during the initial operation. CONCLUSIONS: The CV distribution is similar in children with UPJO across all ages; CV in infants and young children are not rare. LP should be considered as CV are prone to being missed during OP. LEVELS OF EVIDENCE: III.

20.
Heliyon ; 10(1): e23651, 2024 Jan 15.
Article in English | MEDLINE | ID: mdl-38192752

ABSTRACT

The development of mobile networks has led to the emergence of challenges such as high delays in storage, computing and traffic management. To deal with these challenges, fifth-generation networks emphasize the use of technologies such as mobile cloud computing and mobile edge computing. Mobile Edge Cloud Computing (MECC) is an emerging distributed computing model that provides access to cloud computing services at the edge of the network and near mobile users. With offloading tasks at the edge of the network instead of transferring them to a remote cloud, MECC can realize flexibility and real-time processing. During computation offloading, the requirements of Internet of Things (IoT) applications may change at different stages, which is ignored in existing works. With this motivation, we propose a task offloading method under dynamic resource requirements during the use of IoT applications, which focuses on the problem of workload fluctuations. The proposed method uses a learning automata-based offload decision-maker to offload requests to the edge layer. An auto-scaling strategy is then developed using a long short-term memory network which can estimate the expected number of future requests. Finally, an Asynchronous Advantage Actor-Critic algorithm as a deep reinforcement learning-based approach decides to scale down or scale up. The effectiveness of the proposed method has been confirmed through extensive experiments using the iFogSim simulator. The numerical results show that the proposed method has better scalability and performance in terms of delay and energy consumption than the existing state-of-the-art methods.

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