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1.
Nature ; 628(8006): 104-109, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38350601

ABSTRACT

The development of bimolecular homolytic substitution (SH2) catalysis has expanded cross-coupling chemistries by enabling the selective combination of any primary radical with any secondary or tertiary radical through a radical sorting mechanism1-8. Biomimetic9,10 SH2 catalysis can be used to merge common feedstock chemicals-such as alcohols, acids and halides-in various permutations for the construction of a single C(sp3)-C(sp3) bond. The ability to sort these two distinct radicals across commercially available alkenes in a three-component manner would enable the simultaneous construction of two C(sp3)-C(sp3) bonds, greatly accelerating access to complex molecules and drug-like chemical space11. However, the simultaneous in situ formation of electrophilic and primary nucleophilic radicals in the presence of unactivated alkenes is problematic, typically leading to statistical radical recombination, hydrogen atom transfer, disproportionation and other deleterious pathways12,13. Here we report the use of bimolecular homolytic substitution catalysis to sort an electrophilic radical and a nucleophilic radical across an unactivated alkene. This reaction involves the in situ formation of three distinct radical species, which are then differentiated by size and electronics, allowing for regioselective formation of the desired dialkylated products. This work accelerates access to pharmaceutically relevant C(sp3)-rich molecules and defines a distinct mechanistic approach for alkene dialkylation.


Subject(s)
Alkenes , Catalysis , Hydrogen , Acids/chemistry , Alcohols/chemistry , Alkenes/chemistry , Biomimetics , Hydrogen/chemistry , Pharmaceutical Preparations/chemical synthesis , Pharmaceutical Preparations/chemistry
2.
Nature ; 600(7889): 395-407, 2021 12.
Article in English | MEDLINE | ID: mdl-34912083

ABSTRACT

The ocean is warming, losing oxygen and being acidified, primarily as a result of anthropogenic carbon emissions. With ocean warming, acidification and deoxygenation projected to increase for decades, extreme events, such as marine heatwaves, will intensify, occur more often, persist for longer periods of time and extend over larger regions. Nevertheless, our understanding of oceanic extreme events that are associated with warming, low oxygen concentrations or high acidity, as well as their impacts on marine ecosystems, remains limited. Compound events-that is, multiple extreme events that occur simultaneously or in close sequence-are of particular concern, as their individual effects may interact synergistically. Here we assess patterns and trends in open ocean extremes based on the existing literature as well as global and regional model simulations. Furthermore, we discuss the potential impacts of individual and compound extremes on marine organisms and ecosystems. We propose a pathway to improve the understanding of extreme events and the capacity of marine life to respond to them. The conditions exhibited by present extreme events may be a harbinger of what may become normal in the future. As a consequence, pursuing this research effort may also help us to better understand the responses of marine organisms and ecosystems to future climate change.


Subject(s)
Acids/analysis , Aquatic Organisms , Climate Models , Ecosystem , Global Warming/statistics & numerical data , Oceans and Seas , Oxygen/analysis , Acids/chemistry , Animals , Aquatic Organisms/physiology , Extreme Heat/adverse effects , Food Chain , Hydrogen-Ion Concentration , Oxygen/chemistry
3.
Nature ; 583(7814): 66-71, 2020 07.
Article in English | MEDLINE | ID: mdl-32612224

ABSTRACT

Dental enamel is a principal component of teeth1, and has evolved to bear large chewing forces, resist mechanical fatigue and withstand wear over decades2. Functional impairment and loss of dental enamel, caused by developmental defects or tooth decay (caries), affect health and quality of life, with associated costs to society3. Although the past decade has seen progress in our understanding of enamel formation (amelogenesis) and the functional properties of mature enamel, attempts to repair lesions in this material or to synthesize it in vitro have had limited success4-6. This is partly due to the highly hierarchical structure of enamel and additional complexities arising from chemical gradients7-9. Here we show, using atomic-scale quantitative imaging and correlative spectroscopies, that the nanoscale crystallites of hydroxylapatite (Ca5(PO4)3(OH)), which are the fundamental building blocks of enamel, comprise two nanometric layers enriched in magnesium flanking a core rich in sodium, fluoride and carbonate ions; this sandwich core is surrounded by a shell with lower concentration of substitutional defects. A mechanical model based on density functional theory calculations and X-ray diffraction data predicts that residual stresses arise because of the chemical gradients, in agreement with preferential dissolution of the crystallite core in acidic media. Furthermore, stresses may affect the mechanical resilience of enamel. The two additional layers of hierarchy suggest a possible new model for biological control over crystal growth during amelogenesis, and hint at implications for the preservation of biomarkers during tooth development.


Subject(s)
Amelogenesis , Dental Enamel/chemistry , Acids/chemistry , Calcium/chemistry , Carbonates/chemistry , Crystallization , Density Functional Theory , Dental Enamel/ultrastructure , Durapatite/chemistry , Fluorides/chemistry , Humans , Magnesium/chemistry , Microscopy, Electron, Scanning Transmission , Sodium/chemistry , Tomography , X-Ray Diffraction
4.
Proc Natl Acad Sci U S A ; 119(9)2022 03 01.
Article in English | MEDLINE | ID: mdl-35193977

ABSTRACT

Ocean warming and acidification driven by anthropogenic carbon emissions pose an existential threat to marine calcifying communities. A similar perturbation to global carbon cycling and ocean chemistry occurred ∼56 Ma during the Paleocene-Eocene thermal maximum (PETM), but microfossil records of the marine biotic response are distorted by sediment mixing. Here, we use the carbon isotope excursion marking the PETM to distinguish planktic foraminifer shells calcified during the PETM from those calcified prior to the event and then isotopically filter anachronous specimens from the PETM microfossil assemblages. We find that nearly one-half of foraminifer shells in a deep-sea PETM record from the central Pacific (Ocean Drilling Program Site 865) are reworked contaminants. Contrary to previous interpretations, corrected assemblages reveal a transient but significant decrease in tropical planktic foraminifer diversity at this open-ocean site during the PETM. The decrease in local diversity was caused by extirpation of shallow- and deep-dwelling taxa as they underwent extratropical migrations in response to heat stress, with one prominent lineage showing signs of impaired calcification possibly due to ocean acidification. An absence of subbotinids in the corrected assemblages suggests that ocean deoxygenation may have rendered thermocline depths uninhabitable for some deeper-dwelling taxa. Latitudinal range shifts provided a rapid-response survival mechanism for tropical planktic foraminifers during the PETM, but the rapidity of ocean warming and acidification projected for the coming centuries will likely strain the adaptability of these resilient calcifiers.


Subject(s)
Acids/chemistry , Global Warming , Plankton , Earth, Planet , Fossils , Isotopes
5.
Proc Natl Acad Sci U S A ; 119(38): e2201521119, 2022 09 20.
Article in English | MEDLINE | ID: mdl-36095205

ABSTRACT

Metazoan adaptation to global change relies on selection of standing genetic variation. Determining the extent to which this variation exists in natural populations, particularly for responses to simultaneous stressors, is essential to make accurate predictions for persistence in future conditions. Here, we identified the genetic variation enabling the copepod Acartia tonsa to adapt to experimental ocean warming, acidification, and combined ocean warming and acidification (OWA) over 25 generations of continual selection. Replicate populations showed a consistent polygenic response to each condition, targeting an array of adaptive mechanisms including cellular homeostasis, development, and stress response. We used a genome-wide covariance approach to partition the allelic changes into three categories: selection, drift and replicate-specific selection, and laboratory adaptation responses. The majority of allele frequency change in warming (57%) and OWA (63%) was driven by shared selection pressures across replicates, but this effect was weaker under acidification alone (20%). OWA and warming shared 37% of their response to selection but OWA and acidification shared just 1%, indicating that warming is the dominant driver of selection in OWA. Despite the dominance of warming, the interaction with acidification was still critical as the OWA selection response was highly synergistic with 47% of the allelic selection response unique from either individual treatment. These results disentangle how genomic targets of selection differ between single and multiple stressors and demonstrate the complexity that nonadditive multiple stressors will contribute to predictions of adaptation to complex environmental shifts caused by global change.


Subject(s)
Adaptation, Physiological , Copepoda , Acids/chemistry , Adaptation, Physiological/genetics , Animals , Copepoda/genetics , Copepoda/physiology , Genomics , Global Warming , Homeostasis , Hydrogen-Ion Concentration , Oceans and Seas
6.
Small ; 20(22): e2307595, 2024 May.
Article in English | MEDLINE | ID: mdl-38126648

ABSTRACT

In the osteoporotic microenvironment, the acidic microenvironment generated by excessive osteoclasts not only causes irreversible bone mineral dissolution, but also promotes reactive oxygen species (ROS) production to induce osteoblast senescence and excessive receptor activator of nuclear factor kappa-B ligand (RANKL) production, which help to generate more osteoclasts. Hence, targeting the acidic microenvironment and RANKL production may break this vicious cycle to rescue osteoporosis. To achieve this, an acid-responsive and neutralizing system with high in vivo gene editing capacity is developed by loading sodium bicarbonate (NaHCO3) and RANKL-CRISPR/Cas9 (RC) plasmid in a metal-organic framework. This results showed ZIF8-NaHCO3@Cas9 (ZNC) effective neutralized acidic microenvironment and inhibited ROS production . Surprisingly, nanoparticles loaded with NaHCO3 and plasmids show higher transfection efficiency in the acidic environments as compared to the ones loaded with plasmid only. Finally, micro-CT proves complete reversal of bone volume in ovariectomized mice after ZNC injection into the bone remodeling site. Overall, the newly developed nanoparticles show strong effect in neutralizing the acidic microenvironment to achieve bone protection through promoting osteogenesis and inhibiting osteolysis in a bidirectional manner. This study provides new insights into the treatment of osteoporosis for biomedical and clinical therapies.


Subject(s)
Gene Editing , Metal-Organic Frameworks , Osteoclasts , Osteoporosis , Animals , Osteoporosis/metabolism , Osteoclasts/metabolism , Mice , Metal-Organic Frameworks/chemistry , RANK Ligand/metabolism , Female , CRISPR-Cas Systems , Reactive Oxygen Species/metabolism , Sodium Bicarbonate/chemistry , Acids/chemistry , Nanoparticles/chemistry , Osteogenesis/drug effects , Plasmids/genetics
7.
Int J Mol Sci ; 25(12)2024 Jun 07.
Article in English | MEDLINE | ID: mdl-38928034

ABSTRACT

The electrophilic activation of various substrates via double or even triple protonation in superacidic media enables reactions with extremely weak nucleophiles. Despite the significant progress in this area, the utility of organophosphorus compounds as superelectrophiles still remains limited. Additionally, the most common superacids require a special care due to their high toxicity, exceptional corrosiveness and moisture sensitivity. Herein, we report the first successful application of the "Brønsted acid assisted Brønsted acid" concept for the superelectrophilic activation of 2-hydroxybenzo[e][1,2]oxaphosphinine 2-oxides (phosphacoumarins). The pivotal role is attributed to the tendency of the phosphoryl moiety to form hydrogen-bonded complexes, which enables the formation of dicationic species and increases the electrophilicity of the phosphacoumarin. This unmasks the reactivity of phosphacoumarins towards non-activated aromatics, while requiring only relatively non-benign trifluoroacetic acid as the reaction medium.


Subject(s)
Organophosphorus Compounds , Catalysis , Organophosphorus Compounds/chemistry , Hydrogen Bonding , Acids/chemistry , Molecular Structure
8.
J Sci Food Agric ; 104(9): 5381-5390, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38334323

ABSTRACT

BACKGROUND: Hot trub is a macronutrient- and micronutrient-rich by-product generated in the brewing industry, which is still underrated as a raw material for reprocessing purposes. In this context, this study aimed to investigate the extraction of bitter acids' and xanthohumol from hot trub as well as identify the significance of parameters for the process. The research assessed various extraction parameters, such as pH, ethanol concentration, temperature, and solid-to-liquid ratio, using a Plackett-Burman design. RESULTS: Ethanol concentration and pH were the most significant parameters affecting extraction yield. ß-acids were found to be the principal components of the bitter acids, with a maximum concentration near 16 mg g-1, followed by iso-α-acids and α-acids achieving 6 and 3.6 mg g-1, respectively. The highest yields of bitter acids were observed in the highest ethanol concentration, while pH was relevant to extraction process in treatments with low ethanol ratios. Concerning the xanthohumol extraction, the approach achieved maximum concentration (239 µg g-1) in treatments with ethanol concentration above 30%. Despite their variances, the phytochemicals exhibited comparable extraction patterns, indicating similar interactions with macromolecules. Moreover, the characterization of the solid residues demonstrated that the extraction process did not bring about any alterations to the chemical and total protein profiles. CONCLUSION: Ethanol concentration was found to have the most significant impact on the extraction of bitter acids and xanthohumol, while temperature had no significant effect. The solid remains resulting from the extraction showed potential for use as a protein source. © 2024 Society of Chemical Industry.


Subject(s)
Flavonoids , Propiophenones , Flavonoids/isolation & purification , Flavonoids/analysis , Flavonoids/chemistry , Propiophenones/isolation & purification , Propiophenones/analysis , Propiophenones/chemistry , Acids/chemistry , Plant Extracts/chemistry , Plant Extracts/isolation & purification , Beer/analysis , Hydrogen-Ion Concentration , Humulus/chemistry
9.
J Org Chem ; 88(13): 8628-8635, 2023 Jul 07.
Article in English | MEDLINE | ID: mdl-37296496

ABSTRACT

A green method to construct C-S bonds using sulfonyl chlorides and alcohols/acids via a PIII/PV═O catalytic system is reported. The organophosphorus-catalyzed umpolung reaction promotes us to propose the "dual-substrate deoxygenation" strategy. Herein, we adopt the "dual-substrate deoxygenation" strategy, which achieves the deoxygenation of sulfonyl chlorides and alcohols/acids to synthesize thioethers/thioesters driven by PIII/PV═O redox cycling. The catalytic method represents an operationally simple approach using stable phosphine oxide as a precatalyst and shows broad functional group tolerance. The potential application of this protocol is demonstrated by the late-stage diversification of drug analogues.


Subject(s)
Organophosphorus Compounds , Catalysis , Oxygen/chemistry , Alcohols/chemistry , Acids/chemistry , Organophosphorus Compounds/chemistry
10.
Chem Rev ; 121(24): 14649-14681, 2021 12 22.
Article in English | MEDLINE | ID: mdl-34860509

ABSTRACT

Asymmetric hydroalkoxylation of alkenes constitutes a redox-neutral and 100% atom-economical strategy toward enantioenriched oxygenated building blocks from readily available starting materials. Despite their great potential, catalytic enantioselective additions of alcohols across a C-C multiple bond are particularly underdeveloped, especially compared to other hydrofunctionalization methods such as hydroamination. However, driven by some recent innovations, e.g., asymmetric MHAT methods, asymmetric photocatalytic methods, and the development of extremely strong chiral Brønsted acids, there has been a gratifying surge of reports in this burgeoning field. The goal of this review is to survey the growing landscape of asymmetric hydroalkoxylation by highlighting exciting new advances, deconstructing mechanistic underpinnings, and drawing insight from related asymmetric hydroacyloxylation and hydration. A deep appreciation of the underlying principles informs an understanding of the various selectivity parameters and activation modes in the realm of asymmetric alkene hydrofunctionalization while simultaneously evoking the outstanding challenges to the field moving forward. Overall, we aim to lay a foundation for cross-fertilization among various catalytic fields and spur further innovation in asymmetric hydroalkoxylations of C-C multiple bonds.


Subject(s)
Acids , Alkenes , Acids/chemistry , Alkenes/chemistry , Catalysis , Oxidation-Reduction , Stereoisomerism
11.
Nature ; 548(7666): 197-201, 2017 08 10.
Article in English | MEDLINE | ID: mdl-28759888

ABSTRACT

Crystallization of colloidal nanocrystals into superlattices represents a practical bottom-up process with which to create ordered metamaterials with emergent functionalities. With precise control over the size, shape and composition of individual nanocrystals, various single- and multi-component nanocrystal superlattices have been produced, the lattice structures and chemical compositions of which can be accurately engineered. Nanocrystal superlattices are typically prepared by carefully controlling the assembly process through solvent evaporation or destabilization or through DNA-guided crystallization. Slow solvent evaporation or cooling of nanocrystal solutions (over hours or days) is the key element for successful crystallization processes. Here we report the rapid growth (seconds) of micrometre-sized, face-centred-cubic, three-dimensional nanocrystal superlattices during colloidal synthesis at high temperatures (more than 230 degrees Celsius). Using in situ small-angle X-ray scattering, we observe continuous growth of individual nanocrystals within the lattices, which results in simultaneous lattice expansion and fine nanocrystal size control due to the superlattice templates. Thermodynamic models demonstrate that balanced attractive and repulsive interparticle interactions dictated by the ligand coverage on nanocrystal surfaces and nanocrystal core size are responsible for the crystallization process. The interparticle interactions can also be controlled to form different superlattice structures, such as hexagonal close-packed lattices. The rational assembly of various nanocrystal systems into novel materials is thus facilitated for both fundamental research and for practical applications in the fields of magnetics, electronics and catalysis.


Subject(s)
Crystallization , Nanoparticles/chemistry , Temperature , Acids/chemistry , DNA/chemistry , Ligands , Magnetics , Palladium/chemistry , Scattering, Small Angle , Thermodynamics , X-Ray Diffraction
12.
Mar Drugs ; 21(10)2023 Sep 28.
Article in English | MEDLINE | ID: mdl-37888451

ABSTRACT

The objective of this study was to isolate and characterize collagen and angiotensin-I-converting enzyme (ACE)-inhibitory (ACEi) peptides from the swim bladders of monkfish (Lophius litulon). Therefore, acid-soluble collagen (ASC-M) and pepsin-soluble collagen (PSC-M) with yields of 4.27 ± 0.22% and 9.54 ± 0.51%, respectively, were extracted from monkfish swim bladders using acid and enzyme methods. The ASC-M and PSC-M contained Gly (325.2 and 314.9 residues/1000 residues, respectively) as the major amino acid, but they had low imino acid content (192.5 and 188.6 residues/1000 residues, respectively) in comparison with collagen from calf skins (CSC) (216.6 residues/1000 residues). The sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) patterns and ultraviolet (UV) absorption spectrums of ASC-M and PSC-M illustrated that they were mainly composed of type I collagen. Subsequently, three ACEi peptides were isolated from a PSC-M hydrolysate prepared via a double-enzyme system (alcalase + neutrase) and identified as SEGPK (MHP6), FDGPY (MHP7) and SPGPW (MHP9), with molecular weights of 516.5, 597.6 and 542.6 Da, respectively. SEGPK, FDGPY and SPGPW displayed remarkable anti-ACE activity, with IC50 values of 0.63, 0.94 and 0.71 mg/mL, respectively. Additionally, a molecular docking assay demonstrated that the affinities of SEGPK, FDGPY and SPGPW with ACE were -7.3, -10.9 and -9.4 kcal/mol, respectively. The remarkable ACEi activity of SEGPK, FDGPY and SPGPW was due to their connection with the active pockets and/or sites of ACE via hydrogen bonding, hydrophobic interaction and electrostatic force. Moreover, SEGPK, FDGPY and SPGPW could protect HUVECs by controlling levels of nitric oxide (NO) and endothelin-1 (ET-1). Therefore, this work provides an effective means for the preparation of collagens and novel ACEi peptides from monkfish swim bladders, and the prepared ACEi peptides, including SEGPK, FDGPY and SPGPW, could serve as natural functional components in the development of health care products to control hypertension.


Subject(s)
Collagen , Peptidyl-Dipeptidase A , Animals , Molecular Docking Simulation , Collagen/chemistry , Fishes/metabolism , Peptides/pharmacology , Peptides/chemistry , Acids/chemistry , Angiotensins
13.
Mar Drugs ; 21(3)2023 Feb 27.
Article in English | MEDLINE | ID: mdl-36976208

ABSTRACT

There is a growing demand for the identification of alternative sources of collagen not derived from land-dwelling animals. The present study explored the use of pepsin- and acid-based extraction protocols to isolate collagen from the swim bladders of Megalonibea fusca. After extraction, these acid-soluble collagen (ASC) and pepsin-soluble collagen (PSC) samples respectively were subjected to spectral analyses and sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) characterization, revealing both to be comprised of type I collagen with a triple-helical structure. The imino acid content of these ASC and PSC samples was 195 and 199 residues per 1000 residues, respectively. Scanning electron microscopy demonstrated that samples of freeze-dried collagen exhibited a compact lamellar structure, while transmission electron microscopy and atomic force microscopy confirmed the ability of these collagens to undergo self-assembly into fibers. ASC samples exhibited a larger fiber diameter than the PSC samples. The solubility of both ASC and PSC was highest under acidic pH conditions. Neither ASC nor PSC caused any cytotoxicity when tested in vitro, which met one of the requirements for the biological evaluation of medical devices. Thus, collagen isolated from the swim bladders of Megalonibea fusca holds great promise as a potential alternative to mammalian collagen.


Subject(s)
Pepsin A , Perciformes , Animals , Pepsin A/chemistry , Fish Proteins/chemistry , Collagen/chemistry , Collagen Type I/chemistry , Acids/chemistry , Solubility , Skin/chemistry , Mammals
14.
Bioprocess Biosyst Eng ; 46(3): 341-358, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36602611

ABSTRACT

Acidophiles are a group of microorganisms that thrive in acidic environments where pH level is far below the neutral value 7.0. They belong to a larger family called extremophiles, which is a group that thrives in various extreme environmental conditions which are normally inhospitable to other organisms. Several human activities such as mining, construction and other industrial processes release highly acidic effluents and wastes into the environment. Those acidic wastes and wastewaters contain different types of pollutants such as heavy metals, radioactive, and organic, whose have adverse effects on human being as well as on other living organisms. To protect the whole ecosystem, those pollutants containing effluents or wastes must be clean properly before releasing into environment. Physicochemical cleanup processes under extremely acidic conditions are not always successful due to high cost and release of toxic byproducts. While in case of biological methods, except acidophiles, no other microorganisms cannot survive in highly acidic conditions. Therefore, acidophiles can be a good choice for remediation of different types of contaminants present in acidic conditions. In this review article, various roles of acidophilic microorganisms responsible for removing heavy metals and radioactive pollutants from acidic environments were discussed. Bioremediation of various acidic organic pollutants by using acidophiles was also studied. Overall, this review could be helpful to extend our knowledge as well as to do further relevant novel studies in the field of acidic pollutants remediation by applying acidophilic microorganisms.


Subject(s)
Environmental Pollutants , Metals, Heavy , Humans , Ecosystem , Acids/chemistry , Biodegradation, Environmental
15.
Angew Chem Int Ed Engl ; 62(25): e202303204, 2023 Jun 19.
Article in English | MEDLINE | ID: mdl-37159109

ABSTRACT

The location of Brønsted-acid sites (bridging OH groups, b-OH) at different crystallographic positions of zeolite catalysts influences their reactivity due to varying confinement. Selecting the most stable b-OH conformers at each of the 12 T-sites (T=Si/Al) of H-MFI, a representative set of 26 conformers is obtained which includes free b-OH groups pointing into the empty pore space and b-OH groups forming H-bonds across five- or six-membered rings of TO4 tetrahedra. Chemically accurate coupled-cluster-quality calculations for periodic models show that the strength of internal H-bonds and, hence, the OH bond length vary substantially with the framework position. For 11 of the 19 H-bonded b-OH groups examined, our predictions fall into the full width at half maximum range of the experimental signals at 3250±175 cm-1 and 7.0±1.4 ppm which supports previously debated assignments of these signals to H-bonded b-OH sites.


Subject(s)
Zeolites , Zeolites/chemistry , Hydrogen Bonding , Acids/chemistry , Magnetic Resonance Spectroscopy/methods , Catalysis
16.
Plant J ; 106(6): 1791-1806, 2021 06.
Article in English | MEDLINE | ID: mdl-33797826

ABSTRACT

Low-molecular-weight organic acid (OA) extrusion by plant roots is critical for plant nutrition, tolerance to cations toxicity, and plant-microbe interactions. Therefore, methodologies for the rapid and precise quantification of OAs are necessary to be incorporated in the analysis of roots and their exudates. The spatial location of root exudates is also important to understand the molecular mechanisms directing OA production and release into the rhizosphere. Here, we report the development of two complementary methodologies for OA determination, which were employed to evaluate the effect of inorganic ortho-phosphate (Pi) deficiency and aluminum toxicity on OA excretion by Arabidopsis roots. OA exudation by roots is considered a core response to different types of abiotic stress and for the interaction of roots with soil microbes, and for decades has been a target trait to produce plant varieties with increased capacities of Pi uptake and Al tolerance. Using targeted ultra-performance liquid chromatography coupled with high-resolution tandem mass spectrometry (UPLC-HRMS/MS), we achieved the quantification of six OAs in root exudates at sub-micromolar detection limits with an analysis time of less than 5 min per sample. We also employed targeted (MS/MS) matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging (MSI) to detect the spatial location of citric and malic acid with high specificity in roots and exudates. Using these methods, we studied OA exudation in response to Al toxicity and Pi deficiency in Arabidopsis seedlings overexpressing genes involved in OA excretion. Finally, we show the transferability of the MALDI-MSI method by analyzing OA excretion in Marchantia polymorpha gemmalings subjected to Pi deficiency.


Subject(s)
Acids/chemistry , Aluminum/toxicity , Phosphorus/administration & dosage , Plant Exudates/chemistry , Plant Roots/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Arabidopsis/chemistry , Arabidopsis/drug effects , Arabidopsis/metabolism , Gene Expression Regulation, Plant/drug effects , Marchantia/chemistry , Marchantia/drug effects , Marchantia/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified
17.
J Am Chem Soc ; 144(42): 19508-19520, 2022 10 26.
Article in English | MEDLINE | ID: mdl-36208192

ABSTRACT

The resolution, line edge roughness, and sensitivity (RLS) trade-off has fundamentally limited the lithographic performance of chemically amplified resists. Production of next-generation transistors using extreme ultraviolet (EUV) lithography depends on a solution to this problem. A resist that simultaneously increases the effective reaction radius of its photogenerated acids while limiting their diffusion radius should provide an elegant solution to the RLS barrier. Here, we describe a generalized synthetic approach to phthalaldehyde derivatives using sulfur(VI) fluoride exchange click chemistry that dramatically expands usable chemical space by enabling virtually any non-ionic photoacid generator (PAG) to be tethered to phthalaldehyde. The resulting polymers represent the first ever PAG-tethered self-immolative resists in an architecture that simultaneously displays high contrast, extraordinary sensitivity, and low roughness under EUV exposure. We believe this class of resists will ultimately enable researchers to overcome the RLS trade-off.


Subject(s)
Fluorides , Polymers , Polymers/chemistry , Acids/chemistry , Diffusion , Sulfur
18.
J Am Chem Soc ; 144(32): 14477-14488, 2022 08 17.
Article in English | MEDLINE | ID: mdl-35917469

ABSTRACT

Photoacids and photobases constitute a class of molecules that upon absorption of light undergoes a reversible change in acidity, i.e. pKa. Knowledge of the excited-state pKa value, pKa*, is critical for predicting excited-state proton-transfer behavior. A reasonable approximation of pKa* is possible using the Förster cycle analysis, but only when the ground-state pKa is known. This poses a challenge for the study of weak photoacids (photobases) with less acidic (basic) excited states (pKa* (pKb*) > 7), because ground-state pKa (pKb) values are >14, making it difficult to quantify them accurately in water. Another method to determine pKa* relies on acid-base titrations with photoluminescence detection and Henderson-Hasselbalch analysis. This method requires that the acid dissociation reaction involving the thermally equilibrated electronic excited state reaches chemical quasi-equilibrium, which does not occur for weak photoacids (photobases) due to slow rates of excited-state proton transfer. Herein, we report a method to overcome these limitations. We demonstrate that liquid water and aqueous hydroxide are unique proton-accepting quenchers of excited-state photoacids. We determine that Stern-Volmer quenching analysis is appropriate to extract rate constants for excited-state proton transfer in aqueous solutions from a weak photoacid, 5-aminonaphthalene-1-sulfonate, to a series of proton-accepting quenchers. Analysis of these data by Marcus-Cohen bond-energy-bond-order theory yields an accurate value for pKa* of 5-aminonaphthalene-1-sulfonate. Our method is broadly accessible because it only requires readily available steady-state photoluminescence spectroscopy. Moreover, our results for weak photoacids are consistent with those from previous studies of strong photoacids, each showing the applicability of kinetic theories to interpret driving-force-dependent rate constants for proton-transfer reactions.


Subject(s)
Acids , Protons , Acids/chemistry , Kinetics , Spectrum Analysis , Water/chemistry
19.
Am J Hum Genet ; 104(6): 1127-1138, 2019 06 06.
Article in English | MEDLINE | ID: mdl-31155284

ABSTRACT

Optimal lysosome function requires maintenance of an acidic pH maintained by proton pumps in combination with a counterion transporter such as the Cl-/H+ exchanger, CLCN7 (ClC-7), encoded by CLCN7. The role of ClC-7 in maintaining lysosomal pH has been controversial. In this paper, we performed clinical and genetic evaluations of two children of different ethnicities. Both children had delayed myelination and development, organomegaly, and hypopigmentation, but neither had osteopetrosis. Whole-exome and -genome sequencing revealed a de novo c.2144A>G variant in CLCN7 in both affected children. This p.Tyr715Cys variant, located in the C-terminal domain of ClC-7, resulted in increased outward currents when it was heterologously expressed in Xenopus oocytes. Fibroblasts from probands displayed a lysosomal pH approximately 0.2 units lower than that of control cells, and treatment with chloroquine normalized the pH. Primary fibroblasts from both probands also exhibited markedly enlarged intracellular vacuoles; this finding was recapitulated by the overexpression of human p.Tyr715Cys CLCN7 in control fibroblasts, reflecting the dominant, gain-of-function nature of the variant. A mouse harboring the knock-in Clcn7 variant exhibited hypopigmentation, hepatomegaly resulting from abnormal storage, and enlarged vacuoles in cultured fibroblasts. Our results show that p.Tyr715Cys is a gain-of-function CLCN7 variant associated with developmental delay, organomegaly, and hypopigmentation resulting from lysosomal hyperacidity, abnormal storage, and enlarged intracellular vacuoles. Our data supports the hypothesis that the ClC-7 antiporter plays a critical role in maintaining lysosomal pH.


Subject(s)
Acids/chemistry , Albinism/etiology , Chloride Channels/genetics , Fibroblasts/pathology , Genetic Variation , Lysosomal Storage Diseases/etiology , Lysosomes/metabolism , Albinism/metabolism , Albinism/pathology , Animals , Chloride Channels/physiology , Female , Fibroblasts/metabolism , Humans , Hydrogen-Ion Concentration , Infant , Lysosomal Storage Diseases/metabolism , Lysosomal Storage Diseases/pathology , Male , Mice , Oocytes/metabolism , Xenopus laevis
20.
Chemistry ; 28(64): e202201795, 2022 Nov 16.
Article in English | MEDLINE | ID: mdl-35943080

ABSTRACT

The identification of acid and nonacid species at the external surface of zeolites remains a major challenge, in contrast to the extensively-studied internal acid sites. Here, it is shown that the synthesis of zeolite ZSM-5 samples with distinct particle sizes, combined with solid-state NMR and computational studies of trimethylphosphine oxide (TMPO) adsorption, provides insight into the chemical species on the external surface of the zeolite crystals. 1 H-31 P HETCOR NMR spectra of TMPO-loaded zeolites exhibit a broad correlation peak at δP ∼35-55 ppm and δH ∼5-12 ppm assigned to external SiOH species. Pore-mouth Brønsted acid sites exhibit 31 P and 1 H NMR resonances and adsorption energies close to those reported for internal acid sites interacting with TMPO. The presence of an external tricoordinate Al-Lewis site interacting strongly with TMPO is suggested, resulting in 31 P resonances that overlap with the peaks usually ascribed to the interaction of TMPO with Brønsted sites.


Subject(s)
Zeolites , Zeolites/chemistry , Magnetic Resonance Spectroscopy/methods , Magnetic Resonance Imaging , Acids/chemistry
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