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1.
Mol Plant Microbe Interact ; 33(12): 1411-1423, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32924759

ABSTRACT

A wide variety of leguminous plant-released (iso)flavonoids, such as genistein, are potential inducers of the nodulation (nod) genes of endosymbiotic rhizobia for the production of Nod factors, which are vital signaling molecules for triggering the symbiotic process. However, these (iso)flavonoids are generally thought to be toxic to the bacterial partner to varying degrees. Here, a novel TetR-like regulator gene of the soybean symbiont Bradyrhizobium diazoefficiens USDA110, bdtR (systematic designation blr7023), was characterized. It was found to be rapidly and preferentially induced by genistein, and its mutation resulted in significantly increased expression of the neighboring bll7019-bll7021 genes, encoding a multidrug resistance efflux pump system, in the absence of this isoflavonoid. Then, the transcriptional start site of BdtR was determined, and it was revealed that BdtR acted as a transcriptional repressor of the above efflux system through the binding of an AT-rich operator, which could be completely prevented by genistein. In addition, the ΔbdtR deletion mutant strain showed higher accumulation of extracellular genistein and became less susceptible to the isoflavonoid. In contrast, the inactivation of BdtR led to the significantly decreased induction of a nodulation gene (nodY) independent of the expression of nodD1 and nodW and to much weaker nodulation competitiveness. Taken together, the results show that BdtR plays an early sensing role in maintaining the intracellular homeostasis of genistein, helping to alleviate its toxic effect on this bacterium by negatively regulating neighboring genes encoding an efflux pump system while being essentially required for nodule occupancy competitiveness.[Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Subject(s)
Bradyrhizobium , Genistein , Glycine max , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bradyrhizobium/drug effects , Bradyrhizobium/genetics , Bradyrhizobium/metabolism , Gene Expression Regulation, Bacterial , Genistein/pharmacology , Glycine max/metabolism , Glycine max/microbiology , Symbiosis
2.
Small ; 16(21): e1906055, 2020 05.
Article in English | MEDLINE | ID: mdl-31899607

ABSTRACT

The pathogenicity and antimicrobial properties of engineered nanomaterials (ENMs) are relatively well studied. However, less is known regarding the interactions of ENMs and agriculturally beneficial microorganisms that affect food security. Nanoceria (CeO2 nanoparticles (NPs)), multiwall carbon nanotubes (MWCNTs), graphene nanoplatelets (GNPs), and carbon black (CB) have been previously shown to inhibit symbiotic N2 fixation in soybeans, but direct rhizobial susceptibility is uncertain. Here, Bradyrhizobium diazoefficiens associated with symbiotic N2 fixation in soybeans is assessed, evaluating the role of soybean root exudates (RE) on ENM-bacterial interactions and the effects of CeO2 NPs, MWCNTs, GNPs, and CB on bacterial growth and gene expression. Although bacterial growth is inhibited by 50 mg L-1 CeO2 NPs, MWCNTs, and CB, all ENMs at 0.1 and 10 mg L-1 cause a global transcriptomic response that is mitigated by RE. ENMs may interfere with plant-bacterial signaling, as evidenced by suppressed upregulation of genes induced by RE, and downregulation of genes encoding transport RNA, which facilitates nodulation signaling. MWCNTs and CeO2 NPs inhibit the expression of genes conferring B. diazoefficiens nodulation competitiveness. Surprisingly, the transcriptomic effects on B. diazoefficiens are similar for these two ENMs, indicating that physical, not chemical, ENM properties explain the observed effects.


Subject(s)
Bradyrhizobium , Cerium , Glycine max , Nanotubes, Carbon , Plant Root Nodulation , Bradyrhizobium/drug effects , Cerium/chemistry , Cerium/pharmacology , Nanotubes, Carbon/chemistry , Plant Root Nodulation/drug effects , Glycine max/microbiology
3.
World J Microbiol Biotechnol ; 36(11): 172, 2020 Oct 17.
Article in English | MEDLINE | ID: mdl-33068168

ABSTRACT

Soybean [Glycine max (L.) Merr.] has great economic and nutritional importance mainly due to its high protein content. All plant's N needs can be met by the symbiosis with elite Bradyrhizobium strains applied as inoculants to the seeds at sowing time; however, the increasing use of pesticides in seed treatments can impair the contribution of the biological nitrogen fixation. In this study, we report decreases in cell survival of two strains, B. japonicum SEMIA 5079 and B. elkanii SEMIA 587 in seeds inoculated and treated with StandakTop™, composed of the fungicides pyraclostrobin and thiophanate-methyl and the insecticide fipronil, the pesticides most used in soybean seed treatment in several countries. Cell death was enhanced with the time of exposure to the pesticides, and B. elkanii was less tolerant, with almost no detectable viable cells after 15 days. Change in colony morphology with smaller colonies was observed in the presence of the pesticides, being more drastic with the time of exposure, and attributed to an adaptive response towards survival in the presence of the abiotic stress. However, morphological changes were reversible after elimination of the stressing agent and symbiotic performance under controlled greenhouse conditions was similar between strains that had been or not exposed to the pesticides. In addition, no changes in DNA profiles (BOX-PCR) of both strains were observed after the contact with the pesticides. In two field experiments, impacting effects of the pesticides were observed mainly on the total N accumulated in grains of plants relying on both N2-fixation and N-fertilizer. Our data indicate that StandakTop® affects parameters never reported before, including colony morphology of Bradyrhizobium spp. and N metabolism and/or N remobilization to soybean grains.


Subject(s)
Bradyrhizobium/growth & development , Glycine max/microbiology , Pesticides/adverse effects , Bradyrhizobium/drug effects , Bradyrhizobium/metabolism , Microbial Viability/drug effects , Nitrogen/metabolism , Nitrogen Fixation/drug effects , Glycine max/growth & development , Glycine max/metabolism , Symbiosis
4.
Mol Plant Microbe Interact ; 32(11): 1517-1525, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31265361

ABSTRACT

As inducers of nodulation (nod) genes, flavonoids play an important role in the symbiotic interaction between rhizobia and legumes. However, in addition to the control of expression of nod genes, many other effects of flavonoids on rhizobial cells have been described. Here, we show that the flavonoid naringenin stimulates the growth of the photosynthetic Bradyrhizobium sp. strain ORS285. This growth-stimulating effect was still observed for strain ORS285 with nodD1, nodD2, or the naringenin-degrading fde operon deleted. Phenotypic microarray analysis indicates that in cells grown in the presence of naringenin, the glycerol and fatty acid metabolism is activated. Moreover, electron microscopic and enzymatic analyses show that polyhydroxy alkanoate metabolism is altered in cells grown in the presence of naringenin. Although strain ORS285 was able to degrade naringenin, a fraction was converted into an intensely yellow-colored molecule with an m/z (+) of 363.0716. Further analysis indicates that this molecule is a hydroxylated and O-methylated form of naringenin. In contrast to naringenin, this derivative did not induce nod gene expression, but it did stimulate the growth of strain ORS285. We hypothesize that the growth stimulation and metabolic changes induced by naringenin are part of a mechanism to facilitate the colonization and infection of naringenin-exuding host plants.


Subject(s)
Bradyrhizobium , Fabaceae , Flavanones , Rhizobium , Bacterial Proteins/metabolism , Bradyrhizobium/drug effects , Bradyrhizobium/growth & development , Bradyrhizobium/metabolism , Flavanones/genetics , Flavanones/metabolism , Flavanones/pharmacology , Flavonoids , Genes, Bacterial/genetics , Symbiosis/genetics
5.
Mikrobiol Z ; 78(4): 59-70, 2016 Jul.
Article in Russian, Ukrainian | MEDLINE | ID: mdl-30653880

ABSTRACT

The Relevance. At the recent years in soybean crops the quantity of plant pathogenic fungi has increased. The fungicides of systemic and contact action have been applicated intensively against of them. After introducing into the soil fungicides and/or their deg- radation products can to disrupt the activities of non-target objects - beneficial soil mi- croorganisms, inhibit nodulation process and the nitrogen-fixing activity of diazotrophs. The purpose of the work was to investigate the impact of combined application of fungi- cides with inoculation on the soybean symbiotic system and rhizosphere microorganisms. The Methods. The microbiological and statistical methods, gas chromatography method. The Results. Inoculation of seeds by the highly active Bradyrhizobiumjaponicum UCM B-6035, UCM B-6018 and UCM B-6023 strains the activity of nitrogen-fixing symbiotic systems increased by 1.4-3.4 times in comparison with the variant without of fungicides application and bacterization. Seed treatment by Vitavaks 200 FF fungicide caused a de- crease of'nitrogen-fixing activity of rhizobia industrial strains in symbiosis with soybean by 3-5 times. The seeds inoculation by B. japonicum UCM B-6035 strain promoted to reduce the negative impact of the Maxim Star 025 FS fungicide on the nitrogenase activity of nodulation apparatus. The positive effect of seeds bacterization was observed in the in- crease of the quantity of rhizosphere microorganisms of main ecological trophic groups. In the variant with seed treatment by Maxim Star 025 FS and Kinto duo fungicides was found a decrease in the number of microorganisms of studied groups in comparison with the control variant; the Vitavaks 200 FF fungicide application promoted to improve of these microorganisms development compared with the variant without the fungicides application and bacterization. At the inoculation of rhizobia industrial strains the negative effect of the Maxim Star 025 FS and Kinto duo fungicides to oligoazotrophic and prototrophic micro- organisms was not observed. The Conclusion. The symbiotic system of variant with the combined application of the Kinto duo fungicide with B. japonicum UCM B-6023 strain characterized by the highest nodulation and nitrogen-fixing activity.


Subject(s)
Bradyrhizobium/drug effects , Carboxin/pharmacology , Fungicides, Industrial/pharmacology , Glycine max/drug effects , Plant Root Nodulation/drug effects , Bradyrhizobium/growth & development , Bradyrhizobium/metabolism , Nitrogen Fixation/drug effects , Plant Root Nodulation/physiology , Rhizosphere , Seeds/drug effects , Seeds/growth & development , Seeds/microbiology , Glycine max/growth & development , Glycine max/microbiology , Symbiosis/physiology
6.
Mikrobiol Z ; 78(4): 90-101, 2016 Jul.
Article in Russian, Ukrainian | MEDLINE | ID: mdl-30653883

ABSTRACT

The features of the soybean symbiotic systems formation and carry out the complex es- timate of the rhizobium nodulation ability at the seed inoculation of the microbial composi- tions on the bases of nodule bacteria, azotobacter and phytolectins (soybean seeds lectin, wheat germ agglutinin) were studied in the green-house experiments with a soil cultures. It was shown, that complex inoculants accelerate the process of becoming infected of plants by rhizobia in the early stages of soybean development; contribute to the expansion of the spectrum of genetically determined ability of nodule bacteria in the formation of a certain number of nodules on the host plant during the growing season as well as the formation of more root nodules with more of their weight during the second half of the growing season of soybean and significant increase mass of the one nodule and also slow the root nodules aging process at the end of the growing season compared with a rhizobial monoinoculant. It was proposed to use a complex of criteria in the estimating of the rhizobia nodulation ability in the microbial compositions: "nodulation activity", "nodulation range", "the num- ber of nodules on the plant", "mass of nodules per plant", "mass of one nodule", which are indicative for different stages of the symbiosis formation.


Subject(s)
Azotobacter/growth & development , Bradyrhizobium/growth & development , Glycine max/microbiology , Plant Root Nodulation/physiology , Seeds/microbiology , Symbiosis/physiology , Azotobacter/drug effects , Azotobacter/metabolism , Bradyrhizobium/drug effects , Bradyrhizobium/metabolism , Culture Media/chemistry , Culture Media/pharmacology , Plant Lectins/pharmacology , Plant Root Nodulation/drug effects , Rhizosphere , Seeds/drug effects , Seeds/growth & development , Soybean Proteins/pharmacology , Glycine max/drug effects , Glycine max/growth & development , Symbiosis/drug effects , Wheat Germ Agglutinins/pharmacology
7.
Mol Microbiol ; 93(4): 736-47, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24975873

ABSTRACT

A Bradyrhizobium japonicum mutant defective in the gene encoding the high-affinity Mn(2+) transporter MntH has a severe growth phenotype under manganese limitation. Here, we isolated suppressor mutants of an mntH strain that grew under manganese limitation, and activities of high-affinity Mn(2+) transport and Mn(2+) -dependent enzymes were partially rescued. The suppressor strains harbour gain-of-function mutations in the gene encoding the Mg(2+) channel MgtE. The MgtE variants likely allow Mn(2+) entry via loss of a gating mechanism that normally holds the transporter in the closed state when cellular Mg(2+) levels are high. Both MgtE-dependent and MgtE-independent suppressor phenotypes were recapitulated by magnesium-limited growth of the mntH strain. Growth studies of wild-type cells suggest that manganese is toxic to cells when environmental magnesium is low. Moreover, extracellular manganese and magnesium levels were manipulated to inhibit growth without substantially altering the intracellular content of either metal, implying that manganese toxicity depends on its cellular distribution rather than the absolute concentration. Mg(2+) -dependent enzyme activities were found to be inhibited or stimulated by Mn(2+) . We conclude that Mn(2+) can occupy Mg(2+) binding sites in cells, and suggest that Mg(2+) -dependent processes are targets of manganese toxicity.


Subject(s)
Bacterial Proteins/metabolism , Bradyrhizobium/drug effects , Bradyrhizobium/enzymology , Cation Transport Proteins/metabolism , Magnesium/metabolism , Manganese/toxicity , Antiporters/genetics , Antiporters/metabolism , Bacterial Proteins/genetics , Bradyrhizobium/growth & development , Bradyrhizobium/metabolism , Cation Transport Proteins/deficiency , Gene Deletion , Suppression, Genetic
8.
Int J Mol Sci ; 16(8): 16778-91, 2015 Jul 23.
Article in English | MEDLINE | ID: mdl-26213919

ABSTRACT

We cloned and sequenced the waaL (rfaL) gene from Bradyrhizobium japonicum, which infects soybean and forms nitrogen-fixing nodules on soybean roots. waaL has been extensively studied in the lipopolysaccharide (LPS) biosynthesis of enteric bacteria, but little is known about its function in (brady)rhizobial LPS architecture. To characterize its role as O-antigen ligase in the LPS biosynthesis pathway, we constructed a waaL knock-out mutant and its complemented strain named JS015 and CS015, respectively. LPS analysis showed that an LPS structure of JS015 is deficient in O-antigen as compared to that of the wild type and complemented strain CS015, suggesting that WaaL ligates the O-antigen to lipid A-core oligosaccharide to form a complete LPS. JS015 also revealed increased cell surface hydrophobicity, but it showed decreased motility in soft agar plates. In addition to the alteration in cell surface properties, disruption of the waaL gene caused increased sensitivity of JS015 to hydrogen peroxide, osmotic pressure, and novobiocin. Specifically, plant tests revealed that JS015 failed to nodulate the host plant soybean, indicating that the rhizobial waaL gene is responsible for the establishment of a symbiotic relationship between soybean and B. japonicum.


Subject(s)
Adaptation, Physiological , Bacterial Proteins/genetics , Bradyrhizobium/genetics , Genes, Bacterial , Glycine max/microbiology , Hydrophobic and Hydrophilic Interactions , Stress, Physiological , Symbiosis , Adaptation, Physiological/drug effects , Bacterial Proteins/metabolism , Bradyrhizobium/drug effects , Bradyrhizobium/physiology , Cell Membrane/metabolism , Electrophoresis, Polyacrylamide Gel , Flagella/metabolism , Flagella/ultrastructure , Lipopolysaccharides/metabolism , Molecular Sequence Data , Movement , Mutation , Novobiocin/toxicity , O Antigens , Osmotic Pressure/drug effects , Oxidative Stress/drug effects , Plant Root Nodulation/drug effects , Plant Root Nodulation/genetics , Root Nodules, Plant/drug effects , Root Nodules, Plant/microbiology , Glycine max/drug effects , Stress, Physiological/drug effects , Stress, Physiological/genetics , Symbiosis/drug effects
9.
J Environ Sci (China) ; 33: 203-10, 2015 Jul 01.
Article in English | MEDLINE | ID: mdl-26141894

ABSTRACT

Bacterial ability to colonize the rhizosphere of plants in arsenic (As) contaminated soils is highly important for symbiotic and free-living plant growth-promoting rhizobacteria (PGPR) used as inoculants, since they can contribute to enhance plant As tolerance and limit metalloid uptake by plants. The aim of this work was to study the effect of As on growth, exopolysaccharide (EPS) production, biofilm formation and motility of two strains used as soybean inoculants, Bradyrhizobium japonicum E109 and Azospirillum brasilense Az39. The metabolism of arsenate (As(V)) and arsenite (As(III)) and their removal and/or possible accumulation were also evaluated. The behavior of both bacteria under As treatment was compared and discussed in relation to their potential for colonizing plant rhizosphere with high content of the metalloid. B. japonicum E109 growth was reduced with As(III) concentration from 10 µM while A. brasilense Az39 showed a reduction of growth with As(III) from 500 µM. EPS and biofilm production increased significantly under 25 µM As(III) for both strains. Moreover, this was more notorious for Azospirillum under 500 µM As(III), where motility was seriously affected. Both bacterial strains showed a similar ability to reduce As(V). However, Azospirillum was able to oxidize more As(III) (around 53%) than Bradyrhizobium (17%). In addition, both strains accumulated As in cell biomass. The behavior of Azospirillum under As treatments suggests that this strain would be able to colonize efficiently As contaminated soils. In this way, inoculation with A. brasilense Az39 would positively contribute to promoting growth of different plant species under As treatment.


Subject(s)
Arsenic/toxicity , Azospirillum brasilense/drug effects , Bradyrhizobium/drug effects , Soil Pollutants/toxicity , Arsenic/chemistry , Azospirillum brasilense/metabolism , Biofilms , Biomass , Bradyrhizobium/metabolism , Microbial Viability/drug effects , Movement , Soil Pollutants/chemistry
10.
BMC Genomics ; 15: 643, 2014 Aug 03.
Article in English | MEDLINE | ID: mdl-25086822

ABSTRACT

BACKGROUND: Strain CPAC 7 (=SEMIA 5080) was recently reclassified into the new species Bradyrhizobium diazoefficiens; due to its outstanding efficiency in fixing nitrogen, it has been used in commercial inoculants for application to crops of soybean [Glycine max (L.) Merr.] in Brazil and other South American countries. Although the efficiency of B. diazoefficiens inoculant strains is well recognized, few data on their protein expression are available. RESULTS: We provided a two-dimensional proteomic reference map of CPAC 7 obtained under free-living conditions, with the successful identification of 115 spots, representing 95 different proteins. The results highlighted the expression of molecular determinants potentially related to symbiosis establishment (e.g. inositol monophosphatase, IMPase), fixation of atmospheric nitrogen (N2) (e.g. NifH) and defenses against stresses (e.g. chaperones). By using bioinformatic tools, it was possible to attribute probable functions to ten hypothetical proteins. For another ten proteins classified as "NO related COG" group, we analyzed by RT-qPCR the relative expression of their coding-genes in response to the nodulation-gene inducer genistein. Six of these genes were up-regulated, including blr0227, which may be related to polyhydroxybutyrate (PHB) biosynthesis and competitiveness for nodulation. CONCLUSIONS: The proteomic map contributed to the identification of several proteins of B. diazoefficiens under free-living conditions and our approach-combining bioinformatics and gene-expression assays-resulted in new information about unknown genes that might play important roles in the establishment of the symbiosis with soybean.


Subject(s)
Bradyrhizobium/metabolism , Proteomics/methods , Symbiosis , Bacterial Proteins/metabolism , Bradyrhizobium/drug effects , Bradyrhizobium/genetics , Bradyrhizobium/growth & development , Computational Biology , Electrophoresis, Gel, Two-Dimensional , Gene Expression Regulation, Bacterial/drug effects , Genistein/pharmacology , Genome, Bacterial , Nitrogen Fixation , Open Reading Frames/genetics , Stress, Physiological
11.
Mol Cell Proteomics ; 11(11): 1140-55, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22843990

ABSTRACT

Root hairs are single hair-forming cells on roots that function to increase root surface area, enhancing water and nutrient uptake. In leguminous plants, root hairs also play a critical role as the site of infection by symbiotic nitrogen fixing rhizobia, leading to the formation of a novel organ, the nodule. The initial steps in the rhizobia-root hair infection process are known to involve specific receptor kinases and subsequent kinase cascades. Here, we characterize the phosphoproteome of the root hairs and the corresponding stripped roots (i.e. roots from which root hairs were removed) during rhizobial colonization and infection to gain insight into the molecular mechanism of root hair cell biology. We chose soybean (Glycine max L.), one of the most important crop plants in the legume family, for this study because of its larger root size, which permits isolation of sufficient root hair material for phosphoproteomic analysis. Phosphopeptides derived from root hairs and stripped roots, mock inoculated or inoculated with the soybean-specific rhizobium Bradyrhizobium japonicum, were labeled with the isobaric tag eight-plex iTRAQ, enriched using Ni-NTA magnetic beads and subjected to nanoRPLC-MS/MS1 analysis using HCD and decision tree guided CID/ETD strategy. A total of 1625 unique phosphopeptides, spanning 1659 nonredundant phosphorylation sites, were detected from 1126 soybean phosphoproteins. Among them, 273 phosphopeptides corresponding to 240 phosphoproteins were found to be significantly regulated (>1.5-fold abundance change) in response to inoculation with B. japonicum. The data reveal unique features of the soybean root hair phosphoproteome, including root hair and stripped root-specific phosphorylation suggesting a complex network of kinase-substrate and phosphatase-substrate interactions in response to rhizobial inoculation.


Subject(s)
Bradyrhizobium/physiology , Glycine max/metabolism , Glycine max/microbiology , Phosphoproteins/metabolism , Plant Proteins/metabolism , Plant Roots/microbiology , Proteomics/methods , Amino Acid Motifs , Amino Acid Sequence , Arabidopsis/metabolism , Bradyrhizobium/drug effects , Calcium Signaling/drug effects , Cytoskeleton/drug effects , Cytoskeleton/metabolism , Gene Duplication , Host-Pathogen Interactions/drug effects , Mass Spectrometry , Medicago truncatula/metabolism , Molecular Sequence Data , Organ Specificity/drug effects , Phosphopeptides/chemistry , Phosphopeptides/metabolism , Phosphoproteins/chemistry , Phosphorylation/drug effects , Plant Growth Regulators/pharmacology , Plant Proteins/chemistry , Plant Root Nodulation/drug effects , Plant Roots/drug effects , Plant Roots/enzymology , Protein Kinases/metabolism , Proteome/chemistry , Proteome/metabolism , Glycine max/enzymology , Glycine max/genetics , Statistics as Topic , Water
12.
Proc Natl Acad Sci U S A ; 108(37): 15390-5, 2011 Sep 13.
Article in English | MEDLINE | ID: mdl-21880957

ABSTRACT

The prevailing model of bacterial membrane function predicts that the outer membrane is permeable to most small solutes because of pores with limited selectivity based primarily on size. Here, we identified mnoP in the Gram-negative bacterium Bradyrhizobium japonicum as a gene coregulated with the inner membrane Mn(2+) transporter gene mntH. MnoP is an outer membrane protein expressed specifically under manganese limitation. MnoP acts as a channel to facilitate the tranlocation of Mn(2+), but not Co(2+) or Cu(2+), into reconstituted proteoliposomes. An mnoP mutant is defective in high-affinity Mn(2+) transport into cells and has a severe growth phenotype under manganese limitation. We suggest that the outer membrane is a barrier to divalent metal ions that requires a selective channel to meet the nutritional needs of the cell.


Subject(s)
Bacterial Outer Membrane Proteins/metabolism , Bradyrhizobium/metabolism , Cations, Divalent/metabolism , Ion Channels/metabolism , Metals/metabolism , Bacterial Outer Membrane Proteins/chemistry , Bacterial Outer Membrane Proteins/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Binding Sites , Biological Transport/drug effects , Bradyrhizobium/cytology , Bradyrhizobium/drug effects , Bradyrhizobium/genetics , Cation Transport Proteins/genetics , Cation Transport Proteins/metabolism , Gene Expression Regulation, Bacterial/drug effects , Genes, Bacterial/genetics , Liposomes/metabolism , Manganese/deficiency , Manganese/metabolism , Manganese/pharmacology , Promoter Regions, Genetic/genetics , Protein Binding/drug effects , Protein Structure, Secondary
13.
J Hazard Mater ; 475: 134897, 2024 Aug 15.
Article in English | MEDLINE | ID: mdl-38876018

ABSTRACT

Microplastics (MPs), widely presented in cultivated soil, have caused serious stresses on crop growth. However, the mechanism by which MPs affect legumes and rhizobia symbiosis is still unclear. Here, peanut seedlings were inoculated with Bradyrhizobium zhanjiangense CCBAU 51778 and were grown in vermiculite with 3 %/5 % (w/w) addition of PVC (polyvinyl chloride)-MPs/PBAT (polybutylene adipate)-MPs. PVC-MPs and PBAT-MPs separately decreased nodule number by 33-100 % and 2.62-80.91 %. Transcriptome analysis showed that PVC-MPs affected more DEGs (differentially expressed genes) than PBAT-MPs, indicating PVC-MPs were more devastating for the symbiosis than PBAT-MPs. Functional annotation revealed that PVC-MPs and PBAT-MPs enriched DEGs related to biosynthesis pathways such as flavonoid, isoflavonoid, and phenylpropanoid, in peanut. And when the dose increased from 3 % to 5 %, PVC-MPs mainly enriched the pathways of starch and sucrose metabolism, alanine, aspartate and glutamate metabolism, diterpenoid biosynthesis, etc.; PBAT-MPs enriched cysteine and methionine metabolism, photosynthesis, MAPK signaling, and other pathways. These significantly enriched pathways functioned in reducing nodule number and promoting peanut tolerance to MPs stresses. This study reveals the effect of PVC-MPs and PBAT-MPs on peanut and rhizobium symbiosis, and provides new perspectives for legume production and environmental safety.


Subject(s)
Arachis , Microplastics , Polyvinyl Chloride , Symbiosis , Arachis/microbiology , Arachis/metabolism , Arachis/drug effects , Microplastics/toxicity , Soil Pollutants/toxicity , Soil Pollutants/metabolism , Rhizobium/metabolism , Rhizobium/drug effects , Polyesters/metabolism , Metabolic Networks and Pathways/drug effects , Bradyrhizobium/metabolism , Bradyrhizobium/drug effects
14.
J Environ Manage ; 130: 126-34, 2013 Nov 30.
Article in English | MEDLINE | ID: mdl-24076512

ABSTRACT

Heavy metals in soil are known to affect rhizobia-legume interaction reducing not only rhizobia viability, but also nitrogen fixation. In this work, we have compared the response of the symbiotic interaction established between the peanut (Arachis hypogaea L.) and a sensitive (Bradyrhizobium sp. SEMIA6144) or a tolerant (Bradyrhizobium sp. NLH25) strain to Cd under exposure to this metal. The addition of 10 µM Cd reduced nodulation and nitrogen content in both symbiotic associations, being the interaction established with the sensitive strain more affected than that with the tolerant one. Plants inoculated with the sensitive strain accumulated more Cd than those inoculated with the tolerant strain. Nodules showed an increase in reactive oxygen species (ROS) production when exposed to Cd. The histological structure of the nodules exposed to Cd revealed a deposit of unknown material on the cortex and a significant reduction in the infection zone diameter in both strains, and a greater number of uninfected cells in those nodules occupied by the sensitive strain. In conclusion, Cd negatively impacts on peanut-bradyrhizobia interaction, irrespective of the tolerance of the strains to this metal. However, the inoculation of peanut with Bradyrhizobium sp. NLH25 results in a better symbiotic interaction suggesting that the tolerance observed in this strain could limit Cd accumulation by the plant.


Subject(s)
Arachis/microbiology , Bradyrhizobium/drug effects , Cadmium/toxicity , Arachis/drug effects , Arachis/metabolism , Bradyrhizobium/metabolism , Bradyrhizobium/physiology , Environmental Pollutants/toxicity , Hydrogen Peroxide/metabolism , Lipid Peroxidation , Oxidative Stress , Plant Roots/anatomy & histology , Plant Roots/drug effects , Plant Roots/microbiology , Reactive Oxygen Species/metabolism , Soil Microbiology , Symbiosis/drug effects
15.
J Bacteriol ; 194(9): 2363-70, 2012 May.
Article in English | MEDLINE | ID: mdl-22389485

ABSTRACT

Previous microarray analyses revealed that in Bradyrhizobium japonicum, about 100 genes are induced by genistein, an isoflavonoid secreted by soybean. This includes the three genes freC, freA, and freB (systematic designations bll4319, bll4320, and bll4321), which are likely to form a genistein-, daidzein-, and coumestrol-inducible operon and to encode a multidrug efflux system. Upstream of freCAB and in the opposite orientation, FrrA (systematic designation Blr4322), which has similarity to TetR-type regulators, is encoded. A deletion of frrA leads to increased expression of freB in the absence of an inducer. We identified the correct translational start codon of frrA and showed that the gene is inducible by genistein and daidzein. The protein, which was heterologously expressed and purified from Escherichia coli, binds to two palindrome-like DNA elements (operator A and operator B), which are located in the intergenic region between freC and frrA. The replacement of several nucleotides or the insertion of additional spacer nucleotides prevented binding. Binding of FrrA was also affected by the addition of genistein. By mapping the transcription start sites, we found that operator A covers the transcriptional start site of freC and operator B is probably located between the -35 regions of the two divergently oriented genes. Operator A seems to be conserved in a few similar gene constellations in other proteobacteria. Our data indicate that in B. japonicum, besides NodD1 (the LysR family) and NodVW (a two-component response regulator), a third regulator type (a TetR family member) which responds to the plant signal molecules genistein and daidzein exists.


Subject(s)
Bacterial Proteins/metabolism , Bradyrhizobium/metabolism , Flavonoids/pharmacology , Gene Expression Regulation, Bacterial/physiology , Bacterial Proteins/genetics , Bradyrhizobium/drug effects , Bradyrhizobium/genetics , Codon, Initiator , Mutation , Plant Root Nodulation , Glycine max/microbiology , Glycine max/physiology
16.
Appl Environ Microbiol ; 78(8): 2896-903, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22307307

ABSTRACT

Flavonoids, secondary plant metabolites which mainly have a polyphenolic structure, play an important role in plant-microbe communications for nitrogen-fixing symbiosis. Among 10 polyphenolic compounds isolated from soybean roots in our previous study, coumestrol showed the highest antioxidant activity. In this study, its effect on the soybean nodulation was tested. The soybean symbiont Bradyrhizobium japonicum USDA110 pretreated with 20 µM coumestrol enhanced soybean nodulation by increasing the number of nodules 1.7-fold compared to the control. We also tested the effect of coumestrol on B. japonicum biofilm formation. At a concentration of 2 µM, coumestrol caused a higher degree of biofilm formation than two major soybean isoflavonoids, genistein and daidzein, although no biofilm formation was observed at a concentration of 20 µM each compound. A genome-wide transcriptional analysis was performed to obtain a comprehensive snapshot of the B. japonicum response to coumestrol. When the bacterium was incubated in 20 µM coumestrol for 24 h, a total of 371 genes (139 upregulated and 232 downregulated) were differentially expressed at a 2-fold cutoff with a q value of less than 5%. No common nod gene induction was found in the microarray data. However, quantitative reverse transcription-PCR (qRT-PCR) data showed that incubation for 12 h resulted in a moderate induction (ca. 2-fold) of nodD1 and nodABC, indicating that soybean coumestrol is a weak inducer of common nod genes. In addition, disruption of nfeD (bll4952) affected the soybean nodulation by an approximate 30% reduction in the average number of nodules.


Subject(s)
Biofilms/growth & development , Bradyrhizobium/drug effects , Bradyrhizobium/physiology , Coumestrol/metabolism , Gene Expression Regulation, Bacterial/drug effects , Biofilms/drug effects , Gene Expression Profiling , Plant Root Nodulation/drug effects , Real-Time Polymerase Chain Reaction , Glycine max/chemistry
17.
Biometals ; 25(1): 23-32, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21766174

ABSTRACT

In this study, the effects of cadmium (Cd) on cell morphology and antioxidant enzyme activities as well as the distribution of the metal in different cell compartments in Bradyrhizobium sp. strains were investigated. These strains were previously classified as sensitive (Bradyrhizobium sp. SEMIA 6144) and tolerant (Bradyrhizobium sp. NLH25) to Cd. Transmission electron micrographs showed large electron-translucent inclusions in the sensitive strain and electron-dense bodies in the tolerant strain, when exposed to Cd. Analysis of Cd distribution revealed that it was mainly bounded to cell wall in both strains. Antioxidant enzyme activities were significantly different in each strain. Only the tolerant strain was able to maintain a glutathione/oxidized glutathione (GSH/GSSG) ratio by an increase of GSH reductase (GR) and GSH peroxidase (GPX) enzyme activities. GSH S-transferase (GST) and catalase (CAT) activities were drastically inhibited in both strains while superoxide dismutase (SOD) showed a significant decrease only in the sensitive strain. In conclusion, our findings suggest that GSH content and its related enzymes are involved in the Bradyrhizobium sp. tolerance to Cd contributing to the cellular redox balance.


Subject(s)
Antioxidants/metabolism , Arachis/microbiology , Bradyrhizobium/drug effects , Bradyrhizobium/metabolism , Cadmium/toxicity , Glutathione/metabolism , Bradyrhizobium/ultrastructure , Cadmium/metabolism , Catalase/metabolism , Glutathione Peroxidase/metabolism , Oxidation-Reduction , Oxidative Stress , Superoxide Dismutase/metabolism , Symbiosis
18.
Curr Microbiol ; 65(4): 390-7, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22735983

ABSTRACT

Rhizobial inoculation plays an important role in yielding enhancement of soybean, but it is frequently disturbed by competition with bacterial population present in the soil. Identification of potential indigenous rhizobia as competitive inoculants for efficient nodulation and N(2)-fixation of soybean was assessed under laboratory and field conditions. Two indigenous bradyrhizobial isolates (MPSR033 and MPSR220) and its derived different antibiotic (streptomycin and gentamicin) and phage (RT5 and RT6)-resistant mutant strains were used for competition study. Nodulation occupancy between parent and mutant strains was compared on soybean cultivar JS335 under exotic condition. Strain MPSR033 Sm(r) V(r) was found highly competitive for nodule occupancy in all treatment combinations. On the basis of laboratory experiments four indigenous strains (MPSR033, MPSR033 Sm(r), MPSR033 Sm(r) V(r), MPSR220) were selected for their symbiotic performance along with two exotic strains (USDA123 and USDA94) on two soybean cultivars under field conditions. A significant symbiotic interaction between Bradyrhizobium strains and soybean cultivar was observed. Strain MPSR033 Sm(r) V(r) was found superior among the rhizobial treatments in seed yield production with both cultivars. The 16S rRNA region sequence analysis of the indigenous strains showed close relationship with Bradyrhizobium yuanmingense strain. These findings widen out the usefulness of antibiotic-resistance marked phage-resistant bradyrhizobial strains in interactive mode for studying their symbiotic effectiveness with host plant, and open the way to study the mechanism of contact-dependent growth inhibition in rhizobia.


Subject(s)
Bradyrhizobium/isolation & purification , Bradyrhizobium/physiology , Glycine max/microbiology , Glycine max/physiology , Symbiosis , Anti-Bacterial Agents/pharmacology , Antibiosis , Bacteriophages/growth & development , Bradyrhizobium/drug effects , Bradyrhizobium/virology , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Drug Resistance, Bacterial , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Root Nodules, Plant/microbiology , Sequence Analysis, DNA
19.
Curr Microbiol ; 65(4): 465-74, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22782468

ABSTRACT

Soybean lectin (SBL) participates in the recognition between Bradyrhizobium japonicum and soybean although its role remains unknown. To search for changes in the proteome in response to SBL, B. japonicum USDA 110 was incubated for 12 h in a C- and N-free medium with or without SBL (10 µg ml(-1)), and the soluble protein profiles were compared. Two polypeptides, S-adenosyl-methionine synthetase (MetK) and the 30S ribosomal protein S1 (RpsA), were found only in the fractions from rhizobia incubated without SBL. Transcript levels of metK and rpsA were not correlated with polypeptide levels, indicating that there was regulation at translation. In support of this proposal, the 5' translation initiation-region of rpsA mRNA contained folding elements as those involved in regulation of its translation in other species. Disappearance of MetK and RpsA from the soluble protein fractions of SBL-treated rhizobia suggests that SBL might have attenuated the nutritional stress response of B. japonicum.


Subject(s)
Bradyrhizobium/drug effects , Bradyrhizobium/metabolism , Gene Expression Regulation, Bacterial/drug effects , Glycine max/chemistry , Lectins/pharmacology , Methionine Adenosyltransferase/antagonists & inhibitors , Ribosomal Proteins/antagonists & inhibitors , Carbon/metabolism , Culture Media/chemistry , Lectins/isolation & purification , Nitrogen/metabolism , Seeds/chemistry
20.
Mikrobiol Z ; 74(6): 9-16, 2012.
Article in Russian | MEDLINE | ID: mdl-23293821

ABSTRACT

On the basis of natural exopolysaccharide xanthan and exopolyacrylamide the sticky-gene composition has been developed. Addition of that composition to the culture medium provided a 26.3 times higher viability of Bradyrhizobium japonicum UCM B-6035 cells during its storage. Introduction of plant growth regulators biosil or ivin into this composition increased the survival of rhizobia. Application of gel inoculant B. japonicum favored more intensive growth of rhizosphere microorganisms, nutrient's accumulation in the soil and increased productivity of soybean-Rhizobium symbiosis.


Subject(s)
Bradyrhizobium/physiology , Glycine max/microbiology , Glycine max/physiology , Plant Roots/microbiology , Symbiosis/physiology , Acrylic Resins/pharmacology , Adhesives/pharmacology , Bradyrhizobium/drug effects , Gels , Microbial Viability/drug effects , Photosynthesis/drug effects , Plant Growth Regulators/pharmacology , Plant Leaves/physiology , Plant Roots/drug effects , Polysaccharides, Bacterial/pharmacology , Rhizosphere , Glycine max/drug effects , Symbiosis/drug effects
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