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1.
Clin Infect Dis ; 78(5): 1214-1221, 2024 May 15.
Article in English | MEDLINE | ID: mdl-38381586

ABSTRACT

BACKGROUND: Nontoxigenic Corynebacterium diphtheriae, often associated with wounds, can rarely cause infective endocarditis (IE). Five patients with C. diphtheriae IE were identified within 12 months at a Seattle-based hospital system. We reviewed prior C. diphtheriae-positive cultures to determine if detections had increased over time and evaluated epidemiologic trends. METHODS: We conducted a formal electronic health record search to identify all patients aged ≥18 years with C. diphtheriae detected in a clinical specimen (ie, wound, blood, sputum) between 1 September 2020 and 1 April 2023. We collected patient demographics, housing status, comorbidities, substance-use history, and level of medical care required at detection. We extracted laboratory data on susceptibilities of C. diphtheriae isolates and on other pathogens detected at the time of C. diphtheriae identification. RESULTS: Between 1 September 2020 and 1 April 2023, 44 patients (median age, 44 years) had a C. diphtheriae-positive clinical culture, with most detections occurring after March 2022. Patients were predominantly male (75%), White (66%), unstably housed (77%), and had a lifetime history of injecting drugs (75%). Most C. diphtheriae-positive cultures were polymicrobial, including wound cultures from 36 (82%) patients and blood cultures from 6 (14%) patients, not mutually exclusive. Thirty-four patients (77%), including all 5 patients with C. diphtheriae IE, required hospital admission for C. diphtheriae or a related condition. Of the 5 patients with IE, 3 died of IE and 1 from COVID-19. CONCLUSIONS: Findings suggest a high-morbidity outbreak disproportionately affecting patients who use substances and are unstably housed.


Subject(s)
Corynebacterium diphtheriae , Diphtheria , Humans , Male , Adult , Female , Washington/epidemiology , Middle Aged , Corynebacterium diphtheriae/isolation & purification , Diphtheria/epidemiology , Diphtheria/microbiology , Endocarditis, Bacterial/epidemiology , Endocarditis, Bacterial/microbiology , Young Adult , Aged , Anti-Bacterial Agents/therapeutic use , Endocarditis/microbiology , Endocarditis/epidemiology
2.
J Antimicrob Chemother ; 79(5): 968-976, 2024 May 02.
Article in English | MEDLINE | ID: mdl-38497937

ABSTRACT

BACKGROUND: Evidence-based clinical susceptibility breakpoints have been lacking for antimicrobial agents used for diphtheria. OBJECTIVES: We aimed to evaluate broth microdilution and disc diffusion methods and create a dataset of MIC values and inhibition zone diameters (ZDs) from which breakpoints could be determined. METHODS: We included 400 recent clinical isolates equally distributed by species (Corynebacterium diphtheriae and Corynebacterium ulcerans) and by national surveillance programmes (France and Germany). Non-duplicate toxigenic and non-toxigenic isolates were chosen to enable the inclusion of a diversity of susceptibility levels for the 13 agents tested. Broth microdilution and disc diffusion, using EUCAST methodology for fastidious organisms, were used. RESULTS: The distributions of MIC and ZD values were largely in agreement among methods and countries. Breakpoints to allow categorization of WT isolates as susceptible, i.e. susceptible (S) or susceptible, increased exposure (I) were determined for 12 agents. The data supported a breakpoint for benzylpenicillin and amoxicillin of resistant (R) > 1 mg/L since WT isolates were inhibited by 1 mg/L or less. WT isolates were categorized as I (S ≤ 0.001 mg/L) for benzylpenicillin, emphasizing the need for increased exposure, and S (S ≤ 1 mg/L) for amoxicillin. Erythromycin breakpoints were set at S ≤ 0.06 mg/L and R > 0.06 mg/L. The corresponding ZD breakpoints were determined for all agents except amoxicillin, for which categorization was based on benzylpenicillin results. CONCLUSIONS: This work provided a large set of antimicrobial susceptibility data for C. diphtheriae and C. ulcerans, using a harmonized methodology. The dataset allowed EUCAST and experts in the diphtheria field to develop evidence-based breakpoints in January 2023.


Subject(s)
Anti-Bacterial Agents , Corynebacterium diphtheriae , Corynebacterium , Microbial Sensitivity Tests , Microbial Sensitivity Tests/methods , Humans , Corynebacterium/drug effects , Corynebacterium/isolation & purification , Anti-Bacterial Agents/pharmacology , Corynebacterium diphtheriae/drug effects , Corynebacterium diphtheriae/isolation & purification , Corynebacterium diphtheriae/genetics , Germany , Corynebacterium Infections/microbiology , Diphtheria/microbiology , France
3.
J Infect Dis ; 224(2): 318-325, 2021 07 15.
Article in English | MEDLINE | ID: mdl-33245764

ABSTRACT

BACKGROUND: Diphtheria, a life-threatening respiratory disease, is caused mainly by toxin-producing strains of Corynebacterium diphtheriae, while nontoxigenic corynebacteria (eg, Corynebacterium pseudodiphtheriticum) rarely causes diphtheria-like illness. Recently, global diphtheria outbreaks have resulted from breakdown of health care infrastructures, particularly in countries experiencing political conflict. This report summarizes a laboratory and epidemiological investigation of a diphtheria outbreak among forcibly displaced Myanmar nationals in Bangladesh. METHODS: Specimens and clinical information were collected from patients presenting at diphtheria treatment centers. Swabs were tested for toxin gene (tox)-bearing C. diphtheriae by real-time polymerase chain reaction (RT-PCR) and culture. The isolation of another Corynebacterium species prompted further laboratory investigation. RESULTS: Among 382 patients, 153 (40%) tested tox positive for C. diphtheriae by RT-PCR; 31 (20%) PCR-positive swabs were culture confirmed. RT-PCR revealed 78% (298/382) of patients tested positive for C. pseudodiphtheriticum. Of patients positive for only C. diphtheriae, 63% (17/27) had severe disease compared to 55% (69/126) positive for both Corynebacterium species, and 38% (66/172) for only C. pseudodiphtheriticum. CONCLUSIONS: We report confirmation of a diphtheria outbreak and identification of a cocirculating Corynebacterium species. The high proportion of C. pseudodiphtheriticum codetection may explain why many suspected patients testing negative for C. diphtheriae presented with diphtheria-like symptoms.


Subject(s)
Corynebacterium diphtheriae , Corynebacterium , Diphtheria , Corynebacterium/isolation & purification , Corynebacterium diphtheriae/isolation & purification , Diphtheria/epidemiology , Diphtheria Toxin , Disease Outbreaks , Humans , Myanmar/epidemiology , Real-Time Polymerase Chain Reaction
4.
Emerg Infect Dis ; 26(3): 596-600, 2020 03.
Article in English | MEDLINE | ID: mdl-32091368

ABSTRACT

During 2015-2018, seven schools in rural Vietnam experienced diphtheria outbreaks. Multilocus sequence types were the same within schools but differed between schools. Low vaccine coverage and crowded dormitories might have contributed to the outbreaks. Authorities should consider administering routine vaccinations and booster doses for students entering the school system.


Subject(s)
Corynebacterium diphtheriae/isolation & purification , Diphtheria/epidemiology , Disease Outbreaks , Schools , Adolescent , Child , Child Health Services , Child, Preschool , Corynebacterium diphtheriae/genetics , Demography , Diphtheria/etiology , Diphtheria/prevention & control , Female , Humans , Infant , Male , Multilocus Sequence Typing , Vaccination , Vietnam/epidemiology , Young Adult
5.
J Clin Microbiol ; 58(2)2020 01 28.
Article in English | MEDLINE | ID: mdl-31748323

ABSTRACT

In some parts of the world, Corynebacterium diphtheriae has reemerged as a pathogen, especially as a cause of infections among impoverished and marginalized populations. We performed whole-genome sequencing (WGS) on all cutaneous C. diphtheriae isolates (n = 56) from Vancouver's inner-city population over a 3-year time period (2015 to 2018). All isolates with complete genome assembly were toxin negative, contained a common set of 22 virulence factors, and shared a highly conserved accessory genome. One of our isolates harbored a novel plasmid conferring macrolide and lincosamide resistance. Fifty-two out of 56 isolates were multilocus sequence type 76, and single nucleotide variants (SNV) and core-genome multilocus sequence typing (cgMLST) analysis demonstrated tight clustering of our isolates relative to all publicly available C. diphtheriae genomes. All sequence type 76 (ST76) study isolates were within a median of 22 SNVs and 13 cgMLST alleles of each other, while NCBI genomes were within a median of 17,436 SNVs and 1,552 cgMLST alleles of each other (both P < 2.2 × 10-16). A single strain of C. diphtheriae appears to be causing cutaneous infections in the low-income population of Vancouver. Further research is needed to elucidate transmission networks in our study population and standardize C. diphtheriae epidemiological typing when whole genomes are sequenced.


Subject(s)
Corynebacterium diphtheriae/classification , Genome, Bacterial , Phylogeny , Poverty/statistics & numerical data , Whole Genome Sequencing , Bacterial Typing Techniques , Canada/epidemiology , Cities/epidemiology , Corynebacterium diphtheriae/isolation & purification , Corynebacterium diphtheriae/pathogenicity , Diphtheria/epidemiology , Diphtheria/transmission , Humans , Multilocus Sequence Typing , Skin/microbiology , Virulence Factors
6.
BMC Infect Dis ; 20(1): 308, 2020 Apr 25.
Article in English | MEDLINE | ID: mdl-32334517

ABSTRACT

BACKGROUND: Diphtheria outbreaks occurred in endemic areas and imported and indigenous cases are reported in UE/EEA. Because of the high infectiveness and severity of the disease, early and accurate diagnosis of each suspected case is essential for the treatment and management of the case and close contacts. The aim of the study was to establish simple and rapid testing methods based on Loop-Mediated Isothermal Amplification (LAMP) assay for the detection of Corynebacterium diphtheriae and differentiation between toxigenic and non-toxigenic strains. METHODS: Corynebacterium diphtheriae and Corynebacterium ulcerans isolates from the National Institute of Public Health-National Institute of Hygiene collection were used for the development of LAMP assay for the diagnosis of diphtheria and nontoxigenic C. diphtheriae infections. Various colorimetric methods for visualization of results were investigated. Sensitivity and specificity of the assay were examined using a collection of DNA samples from various gram-positive and gram-negative bacteria. RESULTS: The LAMP assay for tox and dtxR genes was developed. The sensitivity and specificity of the assay were calculated as 100%. The detection limit was estimated as 1.42 pg/µl concentration of DNA template when the reaction was conducted for 60 min. However, the detection limit was lowered 10 times for every 10 min of reduction in the time of incubation during the reaction. Positive results were successfully detected colorimetrically using hydroxynaphthol blue, calcein, QuantiFluor, and lateral flow Milenia HybriDetect dipsticks. CONCLUSION: The assay developed in the study might be applied for point-of-care testing of diphtheria and other C. diphtheriae infections as well as for other infections caused by diphtheria-toxin producing Corynebacterium species. It is highly sensitive, specific, inexpensive, easy to use, and suitable for low-resource settings.


Subject(s)
Colorimetry/methods , Corynebacterium diphtheriae/genetics , Diphtheria/microbiology , Nucleic Acid Amplification Techniques/methods , Bacterial Proteins/genetics , Colorimetry/instrumentation , Corynebacterium diphtheriae/isolation & purification , DNA-Binding Proteins/genetics , Gram-Negative Bacteria/genetics , Gram-Positive Bacteria/genetics , Humans , Limit of Detection , Point-of-Care Testing
7.
Epidemiol Infect ; 148: e274, 2020 10 28.
Article in English | MEDLINE | ID: mdl-33109284

ABSTRACT

The introduction of treatment and systematic vaccination has significantly reduced diphtheria mortality; however, toxigenic strains continue to circulate worldwide. The emergence of an indigenous diphtheria case with fatal outcome in Greece, after 30 years, raised challenges for laboratory confirmation, clinical and public health management. Toxigenic Corynebacterium diphtheriae was isolated from an incompletely vaccinated 8-year-old boy with underlying conditions. The child passed away due to respiratory distress syndrome, before the administration of diphtheria antitoxin (DAT). All close contacts in family, school and hospital settings were investigated. Pharyngeal swabs were obtained to determine asymptomatic carriage. Chemoprophylaxis was given for 7 days to all close contacts and a booster dose to those incompletely vaccinated. Testing revealed a classmate, belonging to a subpopulation group (Roma), and incompletely vaccinated, as an asymptomatic carrier with an indistinguishable toxigenic strain (same novel multilocus sequence type, designated ST698). This case highlights the role of asymptomatic carriage, as the entry of toxigenic strains into susceptible populations can put individuals and their environment at risk. Maintenance of high-level epidemiological and microbiological surveillance, implementation of systematic vaccination in children and adults with primary and booster doses, availability of a DAT stockpile, and allowing timely administration are the cornerstone to prevent similar incidents in the future.


Subject(s)
Diphtheria/epidemiology , Diphtheria/pathology , Adult , Ampholyte Mixtures , Anti-Bacterial Agents/administration & dosage , Anti-Bacterial Agents/therapeutic use , Antibodies, Bacterial , Child , Clarithromycin/administration & dosage , Clarithromycin/therapeutic use , Contact Tracing , Corynebacterium diphtheriae/isolation & purification , Diphtheria/prevention & control , Diphtheria-Tetanus-acellular Pertussis Vaccines/administration & dosage , Fatal Outcome , Greece/epidemiology , Humans , Male
8.
BMC Infect Dis ; 20(1): 907, 2020 Dec 01.
Article in English | MEDLINE | ID: mdl-33256617

ABSTRACT

BACKGROUND: Corynebacterium diphtheriae (C. diphtheriae) infections, usually related to upper airways involvement, could be highly invasive. Especially in developing countries, non-toxigenic C. diphtheriae strains are now emerging as cause of invasive disease like endocarditis. The present case stands out for reinforcing the high virulence of this pathogen, demonstrated by the multiple systemic embolism and severe valve deterioration. It also emphasizes the importance of a coordinated interdisciplinary work to address all these challenges related to infectious endocarditis. CASE PRESENTATION: A 21-year-old male cocaine drug abuser presented to the emergency department with a 1-week history of fever, asthenia and dyspnea. His physical examination revealed a mitral systolic murmur, signs of acute arterial occlusion of the left lower limb, severe arterial hypotension and acute respiratory failure, with need of vasoactive drugs, orotracheal intubation/mechanical ventilation, empiric antimicrobial therapy and emergent endovascular treatment. The clinical suspicion of acute infective endocarditis was confirmed by transesophageal echocardiography, demonstrating a large vegetation on the mitral valve associated with severe valvular regurgitation. Abdominal ultrasound was normal with no hepatic, renal, or spleen abscess. Serial blood cultures and thrombus culture, obtained in the vascular procedure, identified non-toxigenic C. diphtheriae, with antibiotic therapy adjustment to monotherapy with ampicillin. Since the patient had a severe septic shock with sustained fever, despite antimicrobial therapy, urgent cardiac surgical intervention was planned. Anatomical findings were compatible with an aggressive endocarditis, requiring mitral valve replacement for a biological prosthesis. During the postoperative period, despite an initial clinical recovery and successfully weaning from mechanical ventilation, the patient presented with a recrudescent daily fever. Computed tomography of the abdomen revealed a hypoattenuating and extensive splenic lesion suggestive of abscess. After sonographically guided bridging percutaneous catheter drainage, surgical splenectomy was performed. Despite left limb revascularization, a forefoot amputation was required due to gangrene. The patient had a good clinical recovery, fulfilling 4-weeks of antimicrobial treatment. CONCLUSION: Despite the effectiveness of toxoid-based vaccines, recent global outbreaks of invasive C. diphtheriae infectious related to non-toxigenic strains have been described. These infectious could be highly invasive as demonstrated in this case. Interdisciplinary work with an institutional "endocarditis team" is essential to achieve favorable clinical outcomes in such defiant scenarios.


Subject(s)
Abdominal Abscess/complications , Corynebacterium Infections/complications , Corynebacterium Infections/diagnosis , Corynebacterium diphtheriae/isolation & purification , Embolism/complications , Endocarditis, Bacterial/complications , Endocarditis, Bacterial/diagnostic imaging , Abdominal Abscess/diagnostic imaging , Abdominal Abscess/surgery , Ampicillin/therapeutic use , Amputation, Surgical , Anti-Bacterial Agents/therapeutic use , Corynebacterium Infections/microbiology , Echocardiography, Transesophageal , Endocarditis, Bacterial/drug therapy , Endocarditis, Bacterial/surgery , Fever , Foot/pathology , Foot/surgery , Gangrene , Heart Valve Prosthesis , Heart Valve Prosthesis Implantation , Humans , Male , Mitral Valve/pathology , Mitral Valve/surgery , Splenectomy , Splenic Diseases/surgery , Treatment Outcome , Young Adult
9.
Euro Surveill ; 25(11)2020 03.
Article in English | MEDLINE | ID: mdl-32209165

ABSTRACT

BackgroundDiphtheria is a potentially fatal disease caused by toxigenic strains of Corynebacterium diphtheriae, C. ulcerans or C. pseudotuberculosis.AimOur objective was to review the epidemiology of diphtheria in the United Kingdom (UK) and the impact of recent changes in public health management and surveillance.MethodsPutative human toxigenic diphtheria isolates in the UK are sent for species confirmation and toxigenicity testing to the National Reference Laboratory. Clinical, epidemiological and microbiological information for toxigenic cases between 2009 and 2017 are described in this population-based prospective surveillance study.ResultsThere were 33 toxigenic cases of diphtheria aged 4 to 82 years. Causative species were C. diphtheriae (n = 18) and C. ulcerans (n = 15). Most C. diphtheriae cases were cutaneous (14/18) while more than half of C. ulcerans cases had respiratory presentations (8/15). Two thirds (23/33) of cases were inadequately immunised. Two cases with C. ulcerans infections died, both inadequately immunised. The major risk factor for C. diphtheriae aquisition was travel to an endemic area and for C. ulcerans, contact with a companion animal. Most confirmed C. diphtheriae or C. ulcerans isolates (441/507; 87%) submitted for toxigenicity testing were non-toxigenic, however, toxin positivity rates were higher (15/23) for C. ulcerans than C. diphtheriae (18/469). Ten non-toxigenic toxin gene-bearing (NTTB) C. diphtheriae were also detected.ConclusionDiphtheria is a rare disease in the UK. In the last decade, milder cutaneous C. diphtheriae cases have become more frequent. Incomplete vaccination status was strongly associated with the risk of hospitalisation and death.


Subject(s)
Corynebacterium diphtheriae/isolation & purification , Corynebacterium/genetics , Diphtheria Toxin/metabolism , Diphtheria/epidemiology , Public Health Surveillance/methods , Adolescent , Adult , Aged , Aged, 80 and over , Animals , Child , Child, Preschool , Corynebacterium/classification , Corynebacterium/isolation & purification , Corynebacterium Infections/diagnosis , Corynebacterium Infections/epidemiology , Diphtheria/diagnosis , Diphtheria/microbiology , Diphtheria Toxoid/administration & dosage , Female , Humans , Male , Middle Aged , Multilocus Sequence Typing , Population Surveillance , Prospective Studies , Public Health Administration , Travel , United Kingdom/epidemiology , Young Adult
10.
J Clin Microbiol ; 57(5)2019 05.
Article in English | MEDLINE | ID: mdl-30814269

ABSTRACT

Cystic fibrosis (CF) patients are commonly colonized by bacterial pathogens, which can induce persistent lung inflammation and may contribute to clinical deterioration. Colonization of CF patients and cross-transmission by Corynebacterium diphtheriae have not been reported so far. The aim of this article was to investigate the possibility of a cross-transmission of C. diphtheriae biovar Belfanti between four patients of a CF center. C. diphtheriae biovar Belfanti (now formally called C. belfantii) isolates were collected from four patients in a single CF care center over a period of 6 years and analyzed by microbiological methods and whole-genome sequencing. Epidemiological links among patients were investigated. Ten isolates were collected from 4 patients. Whole-genome sequencing of one isolate from each patient showed that a single strain was shared among them. In addition, one patient was found to have the same strain in two consecutive samplings performed 9 months apart. The strain was nontoxigenic and was susceptible to most antimicrobial agents. Ciprofloxacin resistance was observed in one patient. The idea of transmission of the strain among patients was supported by the occurrence of same-day visits to the CF center. This study demonstrated colonization of CF patients by C. diphtheriae biovar Belfanti (C. belfantii), and the data suggest persistence and transmission of a unique strain during at least 6 years in a single CF patient care center.


Subject(s)
Asymptomatic Infections , Corynebacterium diphtheriae/isolation & purification , Cystic Fibrosis/microbiology , Diphtheria/transmission , Adult , Anti-Bacterial Agents/pharmacology , Corynebacterium diphtheriae/drug effects , Corynebacterium diphtheriae/genetics , Cystic Fibrosis/complications , Cystic Fibrosis/epidemiology , Diphtheria/epidemiology , Diphtheria/microbiology , Female , France , Humans , Male , Whole Genome Sequencing
12.
Infection ; 47(6): 1055-1057, 2019 Dec.
Article in English | MEDLINE | ID: mdl-30953325

ABSTRACT

We report a rare case of post-traumatic cutaneous diphtheria in a patient referred from a hospital in rural India. The diagnosis of cutaneous diphtheria was confirmed by the isolation of Corynebacterium diphtheriae cultured from the ulcer of the leg, along with Staphylococcus aureus, Streptococcus pyogenes, and Arcanobacterium haemolyticum. The patient was kept on isolation and treated with erythromycin for 14 days without antitoxin. He was discharged when his subsequent cultures turned out to be negative. Chemoprophylaxis was also given to his family members. Such a case highlights the revisiting of vaccination strategies and the role of cutaneous carriers in transmission of this deadly disease.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Corynebacterium diphtheriae/isolation & purification , Diphtheria/diagnosis , Erythromycin/therapeutic use , Skin Diseases/diagnosis , Adult , Diphtheria/classification , Diphtheria/microbiology , Humans , India , Male , Skin Diseases/microbiology , Treatment Outcome
13.
BMC Infect Dis ; 19(1): 1049, 2019 Dec 11.
Article in English | MEDLINE | ID: mdl-31829153

ABSTRACT

BACKGROUND: Diphtheria has been reported as an outbreak in some regions in Indonesia, most especially in East Java Province. Resistance to penicillin, erythromycin, and other antibiotics, single or multiple, has been reported in several studies. This study aims to evaluate the first-line antibiotic susceptibility pattern of toxigenic Corynebacterium diphtheriae isolates. METHODS: This descriptive observational study was performed from August to November 2018. C. diphtheriae isolates were collected from diphtheria patients and carriers in East Java from 2012 to 2017 and kept at the Balai Besar Laboratorium Kesehatan Daerah Surabaya or the Public Health Laboratory of Surabaya. Sample selection was done by random cluster sampling. The sensitivity test by E-test®of the five antibiotics (penicillin, oxacillin, erythromycin, azithromycin, and clarithromycin) was done to determine the minimum inhibitory concentration (MIC). The Clinical and Laboratory Standards Institute M45A (2015) Corynebacterium spp. for penicillin and erythromycin was used as standard. RESULTS: From 114 targeted isolates, 108 were viable and toxigenic. The E-test was performed on the viable isolates. The majority of the hosts were male (58.3%), with median (range) age of 6.5 (1-14) years. Half of the samples were from the 1 to 5-year-old age group. The isolates were acquired much more from patients (78.7%) than carriers (21.3%) and from pharyngeal swab (74.1%). Most of these isolates were from Madura Island (47.2%) and the northern and eastern parts of the province (horseshoe area). Mitis isolates were the major variant (76.9%). The susceptibility pattern of C. diphtheriae to erythromycin was better than that to penicillin. The E-test result for penicillin was 68.52% susceptible, 31.48% intermediate, and 0% resistant (MIC range, < 0.016 to 2 µg/L) and for erythromycin (MIC range, < 0.016 to > 256 µg/L) was 85.2% susceptible, 12% intermediate, and 2.8% resistant The MIC range for oxacillin was 1 to 96 µg/L, while for both azithromycin and clarithromycin were <  0.016 to > 256 µg/L. CONCLUSION: The susceptibility rate of C. diphtheriae to erythromycin is higher than that to penicillin. The regular update of antibiotic selection to the national guidelines is recommended. The MIC reference standard to azithromycin and clarithromycin is also needed.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Corynebacterium diphtheriae/drug effects , Diphtheria/drug therapy , Diphtheria/epidemiology , Drug Resistance, Multiple, Bacterial/drug effects , Erythromycin/therapeutic use , Penicillins/therapeutic use , Adolescent , Child , Child, Preschool , Corynebacterium diphtheriae/isolation & purification , Female , Humans , Indonesia/epidemiology , Infant , Male , Microbial Sensitivity Tests
14.
Euro Surveill ; 24(2)2019 Jan.
Article in English | MEDLINE | ID: mdl-30646974

ABSTRACT

In September 2018, a child who had returned from Somalia to Germany presented with cutaneous diphtheria by toxigenic Corynebacterium diphtheriae biovar mitis. The child's sibling had superinfected insect bites harbouring also toxigenic C. diphtheriae. Next generation sequencing (NGS) revealed the same strain in both patients suggesting very recent human-to-human transmission. Epidemiological and NGS data suggest that the two cutaneous diphtheria cases constitute the first outbreak by toxigenic C. diphtheriae in Germany since the 1980s.


Subject(s)
Corynebacterium diphtheriae/genetics , Corynebacterium diphtheriae/isolation & purification , Diphtheria Toxin/genetics , Diphtheria/diagnosis , High-Throughput Nucleotide Sequencing/methods , Amoxicillin/therapeutic use , Anti-Bacterial Agents/therapeutic use , Child , Clavulanic Acid/therapeutic use , DNA, Bacterial/isolation & purification , DNA, Bacterial/metabolism , Diphtheria/drug therapy , Diphtheria/transmission , Female , Germany , Humans , Real-Time Polymerase Chain Reaction , Siblings , Somalia , Travel , Treatment Outcome , Whole Genome Sequencing
15.
J Trop Pediatr ; 65(2): 183-187, 2019 Apr 01.
Article in English | MEDLINE | ID: mdl-29688558

ABSTRACT

Infection with Corynebacterium diphtheriae persists in Haiti. Twenty-six children with clinically severe respiratory diphtheria presented to a hospital in northern Haiti during a 3-year period beginning in early 2015. The mortality rate was 50%. Partial or absent vaccinations as well as delayed and limited care contributed to mortality. This cohort offer insights into the multiple challenges involved in preventing and caring for children with diphtheria in resource-limited settings.


Subject(s)
Corynebacterium diphtheriae/isolation & purification , Diphtheria/diagnosis , Respiratory Tract Infections/complications , Respiratory Tract Infections/microbiology , Child , Cohort Studies , Delayed Diagnosis , Diphtheria/drug therapy , Diphtheria/microbiology , Diphtheria/mortality , Diphtheria Antitoxin/administration & dosage , Female , Haiti/epidemiology , Health Services Accessibility , Humans , Immunization , Respiratory Tract Infections/epidemiology , Vaccination
16.
Georgian Med News ; (289): 114-116, 2019 Apr.
Article in English | MEDLINE | ID: mdl-31215890

ABSTRACT

The authors report on a clinical case of 91-year-old female patient presented with a two-year history of an enlarging forehead lesion with exudation and bleeding, suspicious of squamous cell carcinoma. Histology ruled out the suspected diagnosis, however the microbiology culture and polymerase chain reaction assay identified non-toxic Corynebacterium diphtheriae. Therefore the diagnosis of localized cutaneous diphtheria was confirmed. The patient was treated with penicillin regimen V 3 x 1 mio IU/ day for 10 days in complex with topical povidone-iodine. The chosen treatment achieved complete healing of the ulcer and no relapse has been reported during the 9-month follow-up. Cutaneous non-healing chronic ulcers can be caused by diphtheroid corynebacteria. Immediate diagnosis is important to exclude toxic variants, which need patient isolation and treatment of persons in close contact.


Subject(s)
Corynebacterium diphtheriae , Diphtheria , Skin Diseases , Aged, 80 and over , Corynebacterium diphtheriae/isolation & purification , Diphtheria/diagnosis , Female , Humans , Neoplasm Recurrence, Local , Skin , Skin Diseases/diagnosis , Wound Healing
17.
BMC Genomics ; 19(1): 869, 2018 Dec 04.
Article in English | MEDLINE | ID: mdl-30509172

ABSTRACT

BACKGROUND: Corynebacterium diphtheriae is the main etiological agent of diphtheria, a global disease causing life-threatening infections, particularly in infants and children. Vaccination with diphtheria toxoid protects against infection with potent toxin producing strains. However a growing number of apparently non-toxigenic but potentially invasive C. diphtheriae strains are identified in countries with low prevalence of diphtheria, raising key questions about genomic structures and population dynamics of the species. This study examined genomic diversity among 48 C. diphtheriae isolates collected in Australia over a 12-year period using whole genome sequencing. Phylogeny was determined using SNP-based mapping and genome wide analysis. RESULTS: C. diphtheriae sequence type (ST) 32, a non-toxigenic clone with evidence of enhanced virulence that has been also circulating in Europe, appears to be endemic in Australia. Isolates from temporospatially related patients displayed the same ST and similarity in their core genomes. The genome-wide analysis highlighted a role of pilins, adhesion factors and iron utilization in infections caused by non-toxigenic strains. CONCLUSIONS: The genomic diversity of toxigenic and non-toxigenic strains of C. diphtheriae in Australia suggests multiple sources of infection and colonisation. Genomic surveillance of co-circulating toxigenic and non-toxigenic C. diphtheriae offer new insights into the evolution and virulence of pathogenic clones and can inform targeted public health actions and policy. The genomes presented in this investigation will contribute to the global surveillance of C. diphtheriae both for the monitoring of antibiotic resistance genes and virulent strains such as those belonging to ST32.


Subject(s)
Corynebacterium diphtheriae/genetics , Genome, Bacterial , Lung/microbiology , Skin/microbiology , Adolescent , Adult , Aged , Aged, 80 and over , Australia , Corynebacterium diphtheriae/classification , Corynebacterium diphtheriae/isolation & purification , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , DNA, Bacterial/metabolism , Female , Genome-Wide Association Study , Humans , Male , Middle Aged , Multilocus Sequence Typing , Phylogeny , Polymorphism, Single Nucleotide , Whole Genome Sequencing , Young Adult
18.
BMC Genomics ; 19(1): 82, 2018 01 25.
Article in English | MEDLINE | ID: mdl-29370758

ABSTRACT

BACKGROUND: The human pathogen Corynebacterium diphtheriae is the causative agent of diphtheria. In the 1990s a large diphtheria outbreak in Eastern Europe was caused by the strain C. diphtheriae NCTC 13129. Although the genome was sequenced more than a decade ago, not much is known about its transcriptome. Our aim was to use transcriptome sequencing (RNA-Seq) to close this knowledge gap and gain insights into the transcriptional landscape of a C. diphtheriae tox+ strain. RESULTS: We applied two different RNA-Seq techniques, one to retrieve 5'-ends of primary transcripts and the other to characterize the whole transcriptional landscape in order to gain insights into various features of the C. diphtheriae NCTC 13129 transcriptome. By examining the data we identified 1656 transcription start sites (TSS), of which 1202 were assigned to genes and 454 to putative novel transcripts. By using the TSS data promoter regions recognized by the housekeeping sigma factor σA and its motifs were analyzed in detail, revealing a well conserved -10 but an only weakly conserved -35 motif, respectively. Furthermore, with the TSS data 5'-UTR lengths were explored. The observed 5'-UTRs range from zero length (leaderless transcripts), which make up 20% of all genes, up to over 450 nt long leaders, which may harbor regulatory functions. The C. diphtheriae transcriptome consists of 471 operons which are further divided into 167 sub-operon structures. In a differential expression analysis approach, we discovered that genetic disruption of the iron-sensing transcription regulator DtxR, which controls expression of diphtheria toxin (DT), causes a strong influence on general gene expression. Nearly 15% of the genome is differentially transcribed, indicating that DtxR might have other regulatory functions in addition to regulation of iron metabolism and DT. Furthermore, our findings shed light on the transcriptional landscape of the DT encoding gene tox and present evidence for two tox antisense RNAs, which point to a new way of transcriptional regulation of toxin production. CONCLUSIONS: This study presents extensive insights into the transcriptome of C. diphtheriae and provides a basis for future studies regarding gene characterization, transcriptional regulatory networks, and regulation of the tox gene in particular.


Subject(s)
Bacterial Proteins/genetics , Corynebacterium diphtheriae/genetics , DNA-Binding Proteins/genetics , Diphtheria/microbiology , Gene Expression Regulation, Bacterial , High-Throughput Nucleotide Sequencing/methods , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Corynebacterium diphtheriae/isolation & purification , DNA-Binding Proteins/antagonists & inhibitors , DNA-Binding Proteins/metabolism , Diphtheria Toxin/metabolism , Genetic Variation , Genome, Bacterial , Humans , Iron/metabolism , Operon , Promoter Regions, Genetic , Transcriptome
19.
Emerg Infect Dis ; 24(11): 2084-2086, 2018 11.
Article in English | MEDLINE | ID: mdl-30334727

ABSTRACT

We report a fatal autochthonous diphtheria case in a migrant worker in Singapore. This case highlights the risk for individual cases in undervaccinated subpopulations, despite high vaccination coverage in the general population. Prompt implementation of public health measures and maintaining immunization coverage are critical to prevent reemergence of diphtheria.


Subject(s)
Bacterial Vaccines/immunology , Communicable Diseases, Emerging/diagnosis , Contact Tracing , Corynebacterium diphtheriae/immunology , Diphtheria/diagnosis , Bangladesh , Communicable Diseases, Emerging/epidemiology , Communicable Diseases, Emerging/prevention & control , Communicable Diseases, Emerging/transmission , Corynebacterium diphtheriae/isolation & purification , Diphtheria/epidemiology , Diphtheria/prevention & control , Diphtheria/transmission , Disease Notification , Fatal Outcome , Humans , Male , Phylogeny , Public Health , Singapore/epidemiology , Travel , Vaccination Coverage , Young Adult
20.
Int J Syst Evol Microbiol ; 68(12): 3826-3831, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30355399

ABSTRACT

Clinical isolates belonging to Corynebacterium diphtheriae biovar Belfanti were characterized by genomic sequencing and biochemical and chemotaxonomic analyses. Phylogenetic analyses indicated that biovar Belfanti represents a branch that is clearly demarcated from C. diphtheriae strains of biovars Mitis and Gravis. The average nucleotide identity of isolates of biovar Belfanti with C. diphtheriae type strain NCTC 11397T (biovar Gravis) was 94.85 %. The inability to reduce nitrate differentiated biovar Belfanti from other strains of C. diphtheriae. On the basis of these results, we propose the name Corynebacterium belfantii sp. nov. for the group of strains previously considered as C. diphtheriaebiovar Belfanti. The type strain of C. belfantii is FRC0043T (=CIP 111412T=DSM 105776T). Strains of C. belfantii were isolated mostly from human respiratory samples.


Subject(s)
Corynebacterium diphtheriae/classification , Phylogeny , Respiratory System/microbiology , Bacterial Typing Techniques , Base Composition , Corynebacterium diphtheriae/genetics , Corynebacterium diphtheriae/isolation & purification , DNA, Bacterial/genetics , Fatty Acids/chemistry , France , Genes, Bacterial , Humans , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Vitamin K 2/chemistry
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