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1.
J Med Genet ; 61(6): 578-585, 2024 May 21.
Article in English | MEDLINE | ID: mdl-38290825

ABSTRACT

OBJECTIVES: Speech and language impairments are core features of the neurodevelopmental genetic condition Kleefstra syndrome. Communication has not been systematically examined to guide intervention recommendations. We define the speech, language and cognitive phenotypic spectrum in a large cohort of individuals with Kleefstra syndrome. METHOD: 103 individuals with Kleefstra syndrome (40 males, median age 9.5 years, range 1-43 years) with pathogenic variants (52 9q34.3 deletions, 50 intragenic variants, 1 balanced translocation) were included. Speech, language and non-verbal communication were assessed. Cognitive, health and neurodevelopmental data were obtained. RESULTS: The cognitive spectrum ranged from average intelligence (12/79, 15%) to severe intellectual disability (12/79, 15%). Language ability also ranged from average intelligence (10/90, 11%) to severe intellectual disability (53/90, 59%). Speech disorders occurred in 48/49 (98%) verbal individuals and even occurred alongside average language and cognition. Developmental regression occurred in 11/80 (14%) individuals across motor, language and psychosocial domains. Communication aids, such as sign and speech-generating devices, were crucial for 61/103 (59%) individuals including those who were minimally verbal, had a speech disorder or following regression. CONCLUSIONS: The speech, language and cognitive profile of Kleefstra syndrome is broad, ranging from severe impairment to average ability. Genotype and age do not explain the phenotypic variability. Early access to communication aids may improve communication and quality of life.


Subject(s)
Chromosome Deletion , Chromosomes, Human, Pair 9 , Cognition , Craniofacial Abnormalities , Intellectual Disability , Phenotype , Humans , Male , Intellectual Disability/genetics , Intellectual Disability/physiopathology , Child , Adolescent , Female , Adult , Child, Preschool , Chromosomes, Human, Pair 9/genetics , Young Adult , Infant , Craniofacial Abnormalities/genetics , Craniofacial Abnormalities/physiopathology , Speech , Speech Disorders/genetics , Speech Disorders/physiopathology , Language , Intelligence/genetics , Language Disorders/genetics , Language Disorders/physiopathology , Heart Defects, Congenital
2.
Hum Mol Genet ; 29(11): 1900-1921, 2020 07 21.
Article in English | MEDLINE | ID: mdl-32196547

ABSTRACT

CTNND1 encodes the p120-catenin (p120) protein, which has a wide range of functions, including the maintenance of cell-cell junctions, regulation of the epithelial-mesenchymal transition and transcriptional signalling. Due to advances in next-generation sequencing, CTNND1 has been implicated in human diseases including cleft palate and blepharocheilodontic (BCD) syndrome albeit only recently. In this study, we identify eight novel protein-truncating variants, six de novo, in 13 participants from nine families presenting with craniofacial dysmorphisms including cleft palate and hypodontia, as well as congenital cardiac anomalies, limb dysmorphologies and neurodevelopmental disorders. Using conditional deletions in mice as well as CRISPR/Cas9 approaches to target CTNND1 in Xenopus, we identified a subset of phenotypes that can be linked to p120-catenin in epithelial integrity and turnover, and additional phenotypes that suggest mesenchymal roles of CTNND1. We propose that CTNND1 variants have a wider developmental role than previously described and that variations in this gene underlie not only cleft palate and BCD but may be expanded to a broader velocardiofacial-like syndrome.


Subject(s)
Catenins/genetics , Cleft Lip/genetics , Cleft Palate/genetics , Craniofacial Abnormalities/genetics , Ectropion/genetics , Heart Defects, Congenital/genetics , Tooth Abnormalities/genetics , Adolescent , Adult , Animals , Anodontia/diagnostic imaging , Anodontia/genetics , Anodontia/physiopathology , Child , Child, Preschool , Cleft Lip/diagnostic imaging , Cleft Lip/physiopathology , Cleft Palate/diagnostic imaging , Cleft Palate/physiopathology , Craniofacial Abnormalities/diagnostic imaging , Craniofacial Abnormalities/physiopathology , Disease Models, Animal , Ectropion/diagnostic imaging , Ectropion/physiopathology , Female , Genetic Predisposition to Disease , Heart Defects, Congenital/diagnostic imaging , Heart Defects, Congenital/physiopathology , Humans , Male , Mice , Tooth Abnormalities/diagnostic imaging , Tooth Abnormalities/physiopathology , Xenopus , Young Adult , Delta Catenin
3.
Development ; 146(14)2019 07 22.
Article in English | MEDLINE | ID: mdl-31253636

ABSTRACT

Although it is well established that some organisms can regenerate lost structures, the ability to remodel existing malformed structures has been less well studied. Therefore, in this study we examined the ability of pre-metamorphic Xenopus laevis tadpoles to self-correct malformed craniofacial tissues. We found that tadpoles can adaptively improve and normalize abnormal craniofacial morphology caused by numerous developmental perturbations. We then investigated the tissue-level and molecular mechanisms that mediate the self-correction of craniofacial defects in pre-metamorphic X. laevis tadpoles. Our studies revealed that this adaptive response involves morphological changes and the remodeling of cartilage tissue, prior to metamorphosis. RT-qPCR and RNA-seq analysis of gene expression suggests a thyroid hormone-independent endocrine signaling pathway as the potential mechanism responsible for triggering the adaptive and corrective remodeling response in these larvae that involves mmp1 and mmp13 upregulation. Thus, investigating how malformed craniofacial tissues are naturally corrected in X. laevis tadpoles has provided valuable insights into the maintenance and manipulation of craniofacial morphology in a vertebrate system. These insights may help in the development of novel therapies for developmental craniofacial anomalies in humans.


Subject(s)
Adaptation, Biological , Bone Remodeling/drug effects , Craniofacial Abnormalities/physiopathology , Maxillofacial Development/drug effects , Thyroid Hormones/pharmacology , Xenopus laevis/growth & development , Adaptation, Biological/drug effects , Adaptation, Biological/genetics , Animals , Bone Remodeling/genetics , Craniofacial Abnormalities/genetics , Craniofacial Abnormalities/pathology , Craniofacial Abnormalities/therapy , Embryo, Nonmammalian , Gene Expression Regulation, Developmental/drug effects , Gene Expression Regulation, Enzymologic/drug effects , Larva , Matrix Metalloproteinase 1/genetics , Matrix Metalloproteinase 1/metabolism , Matrix Metalloproteinase 13/genetics , Matrix Metalloproteinase 13/metabolism , Maxillofacial Development/genetics , Metamorphosis, Biological/drug effects , Metamorphosis, Biological/physiology , Receptors, Thyroid Hormone/genetics , Receptors, Thyroid Hormone/metabolism , Time Factors , Xenopus laevis/embryology
4.
Hum Mol Genet ; 28(4): 584-597, 2019 02 15.
Article in English | MEDLINE | ID: mdl-30335140

ABSTRACT

Mutations in the Tre2/Bub2/Cdc16 (TBC)1 domain family member 24 (TBC1D24) gene are associated with a range of inherited neurological disorders, from drug-refractory lethal epileptic encephalopathy and DOORS syndrome (deafness, onychodystrophy, osteodystrophy, mental retardation, seizures) to non-syndromic hearing loss. TBC1D24 has been implicated in neuronal transmission and maturation, although the molecular function of the gene and the cause of the apparently complex disease spectrum remain unclear. Importantly, heterozygous TBC1D24 mutation carriers have also been reported with seizures, suggesting that haploinsufficiency for TBC1D24 is significant clinically. Here we have systematically investigated an allelic series of disease-associated mutations in neurons alongside a new mouse model to investigate the consequences of TBC1D24 haploinsufficiency to mammalian neurodevelopment and synaptic physiology. The cellular studies reveal that disease-causing mutations that disrupt either of the conserved protein domains in TBC1D24 are implicated in neuronal development and survival and are likely acting as loss-of-function alleles. We then further investigated TBC1D24 haploinsufficiency in vivo and demonstrate that TBC1D24 is also crucial for normal presynaptic function: genetic disruption of Tbc1d24 expression in the mouse leads to an impairment of endocytosis and an enlarged endosomal compartment in neurons with a decrease in spontaneous neurotransmission. These data reveal the essential role for TBC1D24 at the mammalian synapse and help to define common synaptic mechanisms that could underlie the varied effects of TBC1D24 mutations in neurological disease.


Subject(s)
Carrier Proteins/genetics , Craniofacial Abnormalities/genetics , Epilepsy/genetics , Hand Deformities, Congenital/genetics , Hearing Loss, Sensorineural/genetics , Intellectual Disability/genetics , Nails, Malformed/genetics , Seizures/genetics , Amino Acid Sequence/genetics , Animals , Craniofacial Abnormalities/physiopathology , Disease Models, Animal , Endocytosis/genetics , Epilepsy/physiopathology , Exome/genetics , GTPase-Activating Proteins , Gene Expression Regulation , Hand Deformities, Congenital/physiopathology , Haploinsufficiency , Hearing Loss, Sensorineural/physiopathology , Humans , Intellectual Disability/physiopathology , Membrane Proteins , Mice , Mutation , Nails, Malformed/physiopathology , Nerve Tissue Proteins , Neuronal Plasticity/genetics , Neurons/metabolism , Neurons/pathology , Pedigree , Seizures/physiopathology
5.
Am J Med Genet A ; 185(12): 3593-3600, 2021 12.
Article in English | MEDLINE | ID: mdl-33048444

ABSTRACT

Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned "Robinow-associated genes" and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene-targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2, and NXN. One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN, which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS.


Subject(s)
Craniofacial Abnormalities/genetics , Dishevelled Proteins/genetics , Dwarfism/genetics , Genetic Predisposition to Disease , Limb Deformities, Congenital/genetics , Oxidoreductases/genetics , Receptor Tyrosine Kinase-like Orphan Receptors/genetics , Urogenital Abnormalities/genetics , Chromosomes, Human, Pair 17/genetics , Comparative Genomic Hybridization , Craniofacial Abnormalities/physiopathology , Dwarfism/physiopathology , Female , Genes, Dominant/genetics , Genes, Recessive/genetics , Genetic Heterogeneity , Genomic Structural Variation/genetics , Humans , Limb Deformities, Congenital/physiopathology , Male , Urogenital Abnormalities/physiopathology , Exome Sequencing , Whole Genome Sequencing , Wnt Signaling Pathway/genetics
6.
Am J Med Genet A ; 185(12): 3601-3605, 2021 12.
Article in English | MEDLINE | ID: mdl-33277809

ABSTRACT

Robinow syndrome (RS) is a rare, pleiotropic genetic disorder. While it has been reported that males with Robinow syndrome may have genitourinary atypicalities, these have not been systematically studied. We hypothesized that the underlying gene involved plays a role in the clinical variability of associated genital findings and that the phenotypic appearance of the genitalia in RS may have a psychological impact. Urologic-specific examination consisted of detailed examination and a questionnaire to investigate the psychological impact of the genital phenotype. Nine males agreed to a full evaluation. Average age was 19.9 years, penile length was 32.5 mm, stretched length 53 mm, and width 24.4 mm. Penile transposition occurred in all 9 male who allowed full examination. Undescended testicles were noted in 4/10, testicular atrophy in 5/9, buried penis in 7/9, hypospadias in 5/8, and a large penopubic gap (space between dorsum of penis base and pubic bone) in 5/6. In this cohort, 78% answered our semi-quantitative pilot questionnaire that identified diminished sexuality, sexual function, and self-perception. In conclusion, RS has unique, hallmark genital findings including penile transposition, buried penis, undescended testes, and large penopubic gaps. Genital phenotype in males was not shown to correlate with the specific gene involved for each patient. Surgical approaches and other interventions should be studied to address the findings of decreased sexuality and self-perception. It is the authors' opinion that intervention to provide the appearance of penile lengthening be postponed until puberty to allow for maximal natural phallic growth.


Subject(s)
Craniofacial Abnormalities/genetics , Dwarfism/genetics , Limb Deformities, Congenital/genetics , Penis/physiopathology , Testis/physiopathology , Urogenital Abnormalities/physiopathology , Adult , Craniofacial Abnormalities/diagnosis , Craniofacial Abnormalities/physiopathology , Dwarfism/diagnosis , Dwarfism/physiopathology , Genetic Heterogeneity , Humans , Limb Deformities, Congenital/diagnosis , Limb Deformities, Congenital/physiopathology , Male , Penis/abnormalities , Phenotype , Puberty/genetics , Testis/abnormalities , Urogenital Abnormalities/diagnosis , Urogenital Abnormalities/genetics , Young Adult
7.
Am J Med Genet A ; 185(12): 3909-3915, 2021 12.
Article in English | MEDLINE | ID: mdl-34278706

ABSTRACT

Elsahy-Waters syndrome (EWS; OMIM#211380) is a rare autosomal recessive disorder that is caused by loss-of-function variants in CDH11, which encodes cadherin 11. EWS is characterized by brachycephaly, midface hypoplasia, characteristic craniofacial morphology, cervical fusion, cutaneous syndactyly in 2-3 digits, genitourinary anomalies, and intellectual disability. To the best of our knowledge, there have been only six patients of molecularly confirmed EWS. We report the first patient of EWS in East Asia in a Japanese man with a novel splice site homozygous variant of CDH11. We reviewed the clinical and molecular findings in previously reported individuals and the present patient. In addition to the previously reported clinical features of EWS, the present patient had unreported findings of atlantoaxial instability due to posterior displacement of dens, thoracic fusion, thoracic butterfly vertebra, sacralization of the lumbar vertebra (L5), and multiple perineural cysts. The spinal findings in this patient could represent a new spectrum of skeletal phenotypes of EWS. It remains to be clarified whether the multiple perineural cysts in the patient were associated with EWS or coincidental. The current observation might contribute to an expanded understanding of the clinical consequences of loss-of-function of cadherin 11.


Subject(s)
Bone Diseases, Developmental/genetics , Branchial Region/abnormalities , Cadherins/genetics , Craniofacial Abnormalities/genetics , Genetic Predisposition to Disease , Genitalia/abnormalities , Abnormalities, Multiple/genetics , Abnormalities, Multiple/physiopathology , Adult , Bone Diseases, Developmental/physiopathology , Branchial Region/physiopathology , Craniofacial Abnormalities/physiopathology , Genitalia/physiopathology , Humans , Intellectual Disability/genetics , Intellectual Disability/physiopathology , Klippel-Feil Syndrome/genetics , Klippel-Feil Syndrome/physiopathology , Male , Middle Aged , Protein Isoforms/genetics , Syndactyly/genetics , Syndactyly/physiopathology , Urogenital Abnormalities
8.
Am J Med Genet A ; 185(12): 3916-3923, 2021 12.
Article in English | MEDLINE | ID: mdl-34405946

ABSTRACT

Sotos syndrome is characterized by overgrowth starting before birth through childhood with intellectual disability and craniofacial anomalies. The majority of patients are large for gestational age with developmental delay or intellectual disability. The majority of cases are caused by pathogenic variants in NSD1. The most consistent physical features in this disorder are facial dysmorphisms including prominent forehead, downslanted palpebral fissures, prognathism with a pointed chin, and a long and narrow face. We present a follow-up to a cohort of 11 individuals found to harbor heterozygous, pathogenic, or likely pathogenic variants in NSD1. We analyzed the facial dysmorphisms and the condition using retrospective over 20 years. Among these patients, followed in our medical genetics outpatient clinic for variable periods of time, all had a phenotype compatible with the characteristic Sotos syndrome facial features, which evolved with time and became superimposed with natural aging modifications. We present here a long-term follow-up of facial features of Brazilian patients with molecularly confirmed Sotos syndrome. In this largest Brazilian cohort of molecularly confirmed patients with Sotos syndrome to date, we provide a careful description of the facial phenotype, which becomes less pronounced with aging and possibly more difficult to recognize in adults. These results may have broad clinical implications for diagnosis and add to the global clinical delineation of this condition.


Subject(s)
Craniofacial Abnormalities/genetics , Genetic Predisposition to Disease , Histone-Lysine N-Methyltransferase/genetics , Sotos Syndrome/genetics , Adolescent , Brazil/epidemiology , Child , Child, Preschool , Craniofacial Abnormalities/diagnostic imaging , Craniofacial Abnormalities/physiopathology , Developmental Disabilities/complications , Developmental Disabilities/genetics , Developmental Disabilities/physiopathology , Face/diagnostic imaging , Face/physiopathology , Female , Follow-Up Studies , Growth Disorders/complications , Growth Disorders/genetics , Growth Disorders/physiopathology , Humans , Infant , Intellectual Disability/complications , Intellectual Disability/genetics , Intellectual Disability/physiopathology , Male , Phenotype , Sotos Syndrome/diagnostic imaging , Sotos Syndrome/physiopathology
9.
Am J Med Genet A ; 185(4): 1187-1194, 2021 04.
Article in English | MEDLINE | ID: mdl-33394555

ABSTRACT

Congenital disorders of glycosylation (CDG) are an expanding group of metabolic disorders that result from abnormal protein glycosylation. A special subgroup of CDG type II comprises defects in the Conserved Oligomeric Golgi Complex (COG). In order to further delineate the genotypic and phenotypic spectrum of COG complex defect, we describe a novel variant of COG6 gene found in homozygosity in a Moroccan patient with severe presentation of COG6-CDG (OMIM #614576). We compared the phenotype of our patient with other previously reported COG6-CDG cases. Common features in COG6-CDG are facial dysmorphism, growth retardation, microcephaly, developmental disability, liver or gastrointestinal disease, recurrent infections, hypohidrosis/hyperthermia. In addition to these phenotypic features, our patient exhibited a disorder of sexual differentiation, which has rarely been reported in COG6-CDG. We hypothesize that the severe COG6 gene mutation interferes with glycosylation of a disintegrin and metalloprotease family members, inhibiting the correct gonadal distal tip cells migration, fundamental for the genitalia morphogenesis. This report broadens the genetic and phenotypic spectrum of COG6-CDG and provides further supportive evidence that COG6-CDG can present as a disorder of sexual differentiation.


Subject(s)
Abnormalities, Multiple/genetics , Adaptor Proteins, Vesicular Transport/genetics , Craniofacial Abnormalities/genetics , Disorders of Sex Development/genetics , Muscular Atrophy/genetics , Sexual Development/genetics , Abnormalities, Multiple/physiopathology , Codon, Nonsense/genetics , Congenital Disorders of Glycosylation/complications , Congenital Disorders of Glycosylation/genetics , Congenital Disorders of Glycosylation/physiopathology , Craniofacial Abnormalities/complications , Craniofacial Abnormalities/physiopathology , Disorders of Sex Development/complications , Disorders of Sex Development/physiopathology , Genetic Predisposition to Disease , Golgi Apparatus/genetics , Homozygote , Humans , Infant , Infant, Newborn , Karyotype , Male , Microcephaly/complications , Microcephaly/genetics , Microcephaly/physiopathology , Muscular Atrophy/complications , Muscular Atrophy/physiopathology , Phenotype
10.
Am J Med Genet A ; 185(12): 3584-3592, 2021 12.
Article in English | MEDLINE | ID: mdl-32974972

ABSTRACT

Robinow syndrome, a rare genetic disorder, is characterized by skeletal dysplasia with, among other anomalies, extremity and hand anomalies. There is locus heterogeneity and both dominant and recessive inheritance. A detailed description of associated extremity and hand anomalies does not currently exist due to the rarity of this syndrome. This study seeks to document the hand anomalies present in Robinow syndrome to allow for improved rates of timely and accurate diagnosis. A focused assessment of the extremities and stature was performed using clinical examination and standard photographic images. A total of 13 patients with clinical and molecular diagnosis consistent with dominant Robinow syndrome or recessive Robinow syndrome were evaluated. All patients had limb shortening, the most common of which was mesomelia; however, rhizomelia and micromelia were also seen. These findings are relevant to clinical characterization, particularly as Robinow syndrome has classically been defined as a "mesomelic disorder." A total of eight distinct hand anomalies were identified in 12 patients with both autosomal recessive and dominant forms of Robinow syndrome. One patient did not present with any hand differences. The most common hand findings included brachydactyly, broad thumbs, and clinodactyly. A thorough understanding of the breadth of Robinow syndrome-associated extremity and hand anomalies can aid in early patient identification, improving rates of timely diagnosis and allowing for proactive management of sequelae.


Subject(s)
Abnormalities, Multiple/diagnosis , Craniofacial Abnormalities/diagnosis , Dwarfism/diagnosis , Hand Deformities, Congenital/diagnosis , Limb Deformities, Congenital/diagnosis , Urogenital Abnormalities/diagnosis , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/genetics , Abnormalities, Multiple/physiopathology , Adolescent , Child , Child, Preschool , Craniofacial Abnormalities/diagnostic imaging , Craniofacial Abnormalities/genetics , Craniofacial Abnormalities/physiopathology , Dwarfism/diagnostic imaging , Dwarfism/genetics , Dwarfism/physiopathology , Extremities/diagnostic imaging , Extremities/physiopathology , Female , Hand/diagnostic imaging , Hand/physiopathology , Hand Deformities, Congenital/genetics , Hand Deformities, Congenital/physiopathology , Humans , Limb Deformities, Congenital/diagnostic imaging , Limb Deformities, Congenital/genetics , Limb Deformities, Congenital/physiopathology , Male , Phenotype , Urogenital Abnormalities/diagnostic imaging , Urogenital Abnormalities/genetics , Urogenital Abnormalities/physiopathology , Young Adult
11.
Am J Med Genet A ; 185(12): 3576-3583, 2021 12.
Article in English | MEDLINE | ID: mdl-32954672

ABSTRACT

It has been estimated that 10-15% of people with Robinow syndrome (RS) show delayed development, but no studies have formally assessed developmental domains. The objective of this study is to provide the first description of cognitive, adaptive, and psychological functioning in RS. Thirteen participants (10 males) aged 4-51 years were seen for neuropsychological screening. Eight had autosomal-dominant RS (DVL1, n = 5; WNT5A, n = 3), four had autosomal-recessive RS (NXN, n = 2; ROR2, n = 2), and one had a mutation on an RS candidate gene (GPC4). Participants completed measures of intellectual, fine-motor, adaptive, executive, and psychological functioning. Findings indicated generally average intellectual functioning and low-average visuomotor skills. Adaptive functioning was average in autosomal-recessive RS (RRS) but low average in autosomal-dominant RS (DRS). Parent-report indicated executive dysfunction and attention problems in 4/8 children, 3/4 of whom had a DVL1 variant; adult self-report did not indicate similar difficulties. Learning disabilities were also reported in 4/8 individuals with DRS, 3/4 of whom had a DVL1 variant. Peer problems were reported for a majority of participants, many of whom also reported emotional concerns. Altogether, the findings indicate average neurocognitive functioning in RRS. In contrast, DRS, especially DVL1 pathogenic alleles, may confer specific risk for neurodevelopmental disability.


Subject(s)
Craniofacial Abnormalities/genetics , Developmental Disabilities/genetics , Dishevelled Proteins/genetics , Dwarfism/genetics , Limb Deformities, Congenital/genetics , Neurocognitive Disorders/genetics , Urogenital Abnormalities/genetics , Wnt-5a Protein/genetics , Adolescent , Adult , Alleles , Child , Child, Preschool , Craniofacial Abnormalities/epidemiology , Craniofacial Abnormalities/physiopathology , Developmental Disabilities/epidemiology , Developmental Disabilities/physiopathology , Dwarfism/epidemiology , Dwarfism/physiopathology , Genetic Predisposition to Disease , Humans , Learning Disabilities/genetics , Learning Disabilities/physiopathology , Limb Deformities, Congenital/epidemiology , Limb Deformities, Congenital/physiopathology , Male , Middle Aged , Neurocognitive Disorders/epidemiology , Neurocognitive Disorders/physiopathology , Phenotype , Psychosocial Functioning , Urogenital Abnormalities/epidemiology , Urogenital Abnormalities/physiopathology , Young Adult
12.
Am J Med Genet A ; 185(5): 1561-1568, 2021 05.
Article in English | MEDLINE | ID: mdl-33645901

ABSTRACT

Cerebellofaciodental syndrome is characterized by facial dysmorphisms, intellectual disability, cerebellar hypoplasia, and dental anomalies. It is an autosomal-recessive condition described in 2015 caused by pathogenic variants in BRF1. Here, we report a Brazilian patient who faced a diagnostic challenge beginning at 11 months of age. Fortunately, whole-exome sequencing (WES) was performed, detecting the BRF1 variants NM_001519.3:c.1649delG:p.(Gly550Alafs*36) and c.421C>T:p.(Arg141Cys) in compound heterozygosity, thus finally achieving a diagnosis of cerebellofaciodental syndrome. The patient is currently 25 years old and is the oldest patient yet reported. The clinical report and a review of published cases are presented. Atlanto-occipital fusion, a reduced foramen magnum and basilar invagination leading to compression of the medulla-spinal cord transition are skeletal findings not reported in previous cases. The description of syndromes with dental findings shows that such anomalies can be an important clue to relevant differential diagnoses. The cooperation of groups from different international centers made possible the resolution of this and other cases and is one of the strategies to bring medical advances to developing countries, where many patients with rare diseases are difficult to diagnose definitively.


Subject(s)
Abnormalities, Multiple/genetics , Cerebellum/abnormalities , Craniofacial Abnormalities/genetics , Intellectual Disability/genetics , Muscular Atrophy/genetics , Nervous System Malformations/genetics , TATA-Binding Protein Associated Factors/genetics , Tooth Abnormalities/genetics , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/physiopathology , Adult , Brazil/epidemiology , Cerebellum/diagnostic imaging , Cerebellum/physiopathology , Child , Child, Preschool , Craniofacial Abnormalities/diagnostic imaging , Craniofacial Abnormalities/physiopathology , Developmental Disabilities/diagnostic imaging , Developmental Disabilities/genetics , Developmental Disabilities/physiopathology , Female , Genetic Predisposition to Disease , Humans , Infant , Intellectual Disability/diagnostic imaging , Intellectual Disability/physiopathology , Male , Muscular Atrophy/diagnostic imaging , Muscular Atrophy/physiopathology , Nervous System Malformations/diagnostic imaging , Nervous System Malformations/physiopathology , Tooth Abnormalities/diagnostic imaging , Tooth Abnormalities/physiopathology , Exome Sequencing
13.
Am J Med Genet A ; 185(12): 3606-3612, 2021 12.
Article in English | MEDLINE | ID: mdl-33237614

ABSTRACT

Robinow syndrome is characterized by mesomelic limb shortening, hemivertebrae, and genital hypoplasia. Due to low prevalence and considerable phenotypic variability, it has been challenging to definitively characterize features of Robinow syndrome. While craniofacial abnormalities associated with Robinow syndrome have been broadly described, there is a lack of detailed descriptions of genotype-specific phenotypic craniofacial features. Patients with Robinow syndrome were invited for a multidisciplinary evaluation conducted by specialist physicians at our institution. A focused assessment of the craniofacial manifestations was performed by a single expert examiner using clinical examination and standard photographic images. A total of 13 patients with clinical and molecular diagnoses consistent with either dominant Robinow syndrome (DRS) or recessive Robinow syndrome (RRS) were evaluated. On craniofacial examination, gingival hyperplasia was nearly ubiquitous in all patients. Orbital hypertelorism, a short nose with anteverted and flared nares, a triangular mouth with a long philtrum, cleft palate, macrocephaly, and frontal bossing were not observed in all individuals but affected individuals with both DRS and RRS. Other anomalies were more selective in their distribution in this patient cohort. We present a comprehensive analysis of the craniofacial findings in patients with Robinow Syndrome, describing associated morphological features and correlating phenotypic manifestations to underlying genotype in a manner relevant for early recognition and focused evaluation of these patients.


Subject(s)
Abnormalities, Multiple/genetics , Craniofacial Abnormalities/genetics , Dwarfism/genetics , Hypertelorism/genetics , Limb Deformities, Congenital/genetics , Mouth Abnormalities/genetics , Urogenital Abnormalities/genetics , Abnormalities, Multiple/diagnosis , Abnormalities, Multiple/physiopathology , Adolescent , Adult , Child , Child, Preschool , Craniofacial Abnormalities/complications , Craniofacial Abnormalities/diagnosis , Craniofacial Abnormalities/physiopathology , Dwarfism/complications , Dwarfism/diagnosis , Dwarfism/physiopathology , Female , Genes, Dominant/genetics , Genes, Recessive/genetics , Genotype , Humans , Hypertelorism/complications , Hypertelorism/diagnosis , Hypertelorism/physiopathology , Limb Deformities, Congenital/complications , Limb Deformities, Congenital/diagnosis , Limb Deformities, Congenital/physiopathology , Male , Middle Aged , Mouth Abnormalities/complications , Mouth Abnormalities/diagnosis , Mouth Abnormalities/physiopathology , Mutation/genetics , Phenotype , Spine/physiopathology , Urogenital Abnormalities/complications , Urogenital Abnormalities/diagnosis , Urogenital Abnormalities/physiopathology , Young Adult
14.
Epilepsia ; 62(1): e13-e21, 2021 01.
Article in English | MEDLINE | ID: mdl-33280099

ABSTRACT

Chromosome 1q41-q42 deletion syndrome is a rare cause of intellectual disability, seizures, dysmorphology, and multiple anomalies. Two genes in the 1q41-q42 microdeletion, WDR26 and FBXO28, have been implicated in monogenic disease. Patients with WDR26 encephalopathy overlap clinically with those with 1q41-q42 deletion syndrome, whereas only one patient with FBXO28 encephalopathy has been described. Seizures are a prominent feature of 1q41-q42 deletion syndrome; therefore, we hypothesized that pathogenic FBXO28 variants cause developmental and epileptic encephalopathies (DEEs). We describe nine new patients with FBXO28 pathogenic variants (four missense, including one recurrent, three nonsense, and one frameshift) and analyze all 10 known cases to delineate the phenotypic spectrum. All patients had epilepsy and 9 of 10 had DEE, including infantile spasms (3) and a progressive myoclonic epilepsy (1). Median age at seizure onset was 22.5 months (range 8 months to 5 years). Nine of 10 patients had intellectual disability, which was profound in six of nine and severe in three of nine. Movement disorders occurred in eight of 10 patients, six of 10 had hypotonia, four of 10 had acquired microcephaly, and five of 10 had dysmorphic features, albeit different to those typically seen in 1q41-q42 deletion syndrome and WDR26 encephalopathy. We distinguish FBXO28 encephalopathy from both of these disorders with more severe intellectual impairment, drug-resistant epilepsy, and hyperkinetic movement disorders.


Subject(s)
Craniofacial Abnormalities/genetics , Intellectual Disability/genetics , Myoclonic Epilepsies, Progressive/genetics , SKP Cullin F-Box Protein Ligases/genetics , Spasms, Infantile/genetics , Adolescent , Adult , Brain Diseases/complications , Brain Diseases/genetics , Brain Diseases/physiopathology , Child , Child, Preschool , Codon, Nonsense , Craniofacial Abnormalities/complications , Craniofacial Abnormalities/physiopathology , Drug Resistant Epilepsy/complications , Drug Resistant Epilepsy/genetics , Drug Resistant Epilepsy/physiopathology , Electroencephalography , Epileptic Syndromes/complications , Epileptic Syndromes/genetics , Epileptic Syndromes/physiopathology , Female , Frameshift Mutation , Humans , Infant , Intellectual Disability/complications , Intellectual Disability/physiopathology , Male , Mutation, Missense , Myoclonic Epilepsies, Progressive/complications , Myoclonic Epilepsies, Progressive/physiopathology , Phenotype , Spasms, Infantile/complications , Spasms, Infantile/physiopathology , Young Adult
15.
Hum Mol Genet ; 27(16): 2775-2788, 2018 08 15.
Article in English | MEDLINE | ID: mdl-29741626

ABSTRACT

Winchester syndrome (WS, MIM #277950) is an extremely rare autosomal recessive skeletal dysplasia characterized by progressive joint destruction and osteolysis. To date, only one missense mutation in MMP14, encoding the membrane-bound matrix metalloprotease 14, has been reported in WS patients. Here, we report a novel hypomorphic MMP14 p.Arg111His (R111H) allele, associated with a mitigated form of WS. Functional analysis demonstrated that this mutation, in contrast to previously reported human and murine MMP14 mutations, does not affect MMP14's transport to the cell membrane. Instead, it partially impairs MMP14's proteolytic activity. This residual activity likely accounts for the mitigated phenotype observed in our patients. Based on our observations as well as previously published data, we hypothesize that MMP14's catalytic activity is the prime determinant of disease severity. Given the limitations of our in vitro assays in addressing the consequences of MMP14 dysfunction, we generated a novel mmp14a/b knockout zebrafish model. The fish accurately reflected key aspects of the WS phenotype including craniofacial malformations, kyphosis, short-stature and reduced bone density owing to defective collagen remodeling. Notably, the zebrafish model will be a valuable tool for developing novel therapeutic approaches to a devastating bone disorder.


Subject(s)
Abnormalities, Multiple/genetics , Contracture/genetics , Corneal Opacity/genetics , Craniofacial Abnormalities/genetics , Growth Disorders/genetics , Matrix Metalloproteinase 14/genetics , Osteolysis/genetics , Osteoporosis/genetics , Abnormalities, Multiple/physiopathology , Alleles , Animals , Catalytic Domain/genetics , Contracture/physiopathology , Corneal Opacity/physiopathology , Craniofacial Abnormalities/physiopathology , Gene Knockout Techniques , Growth Disorders/physiopathology , Humans , Mice , Osteolysis/physiopathology , Osteoporosis/physiopathology , Phenotype , Zebrafish
16.
Hum Mol Genet ; 27(14): 2454-2465, 2018 07 15.
Article in English | MEDLINE | ID: mdl-29726930

ABSTRACT

The 17 genes of the T-box family are transcriptional regulators that are involved in all stages of embryonic development, including craniofacial, brain, heart, skeleton and immune system. Malformation syndromes have been linked to many of the T-box genes. For example, haploinsufficiency of TBX1 is responsible for many structural malformations in DiGeorge syndrome caused by a chromosome 22q11.2 deletion. We report four individuals with an overlapping spectrum of craniofacial dysmorphisms, cardiac anomalies, skeletal malformations, immune deficiency, endocrine abnormalities and developmental impairments, reminiscent of DiGeorge syndrome, who are heterozygotes for TBX2 variants. The p.R20Q variant is shared by three affected family members in an autosomal dominant manner; the fourth unrelated individual has a de novo p.R305H mutation. Bioinformatics analyses indicate that these variants are rare and predict them to be damaging. In vitro transcriptional assays in cultured cells show that both variants result in reduced transcriptional repressor activity of TBX2. We also show that the variants result in reduced protein levels of TBX2. Heterologous over-expression studies in Drosophila demonstrate that both p.R20Q and p.R305H function as partial loss-of-function alleles. Hence, these and other data suggest that TBX2 is a novel candidate gene for a new multisystem malformation disorder.


Subject(s)
Developmental Disabilities/genetics , DiGeorge Syndrome/genetics , Genetic Predisposition to Disease , T-Box Domain Proteins/genetics , Adult , Animals , Cardiovascular Abnormalities/genetics , Cardiovascular Abnormalities/physiopathology , Cardiovascular System/physiopathology , Child , Craniofacial Abnormalities/genetics , Craniofacial Abnormalities/physiopathology , Developmental Disabilities/physiopathology , DiGeorge Syndrome/physiopathology , Disease Models, Animal , Drosophila melanogaster , Female , Gene Expression Regulation, Developmental , Haploinsufficiency/genetics , Heart Defects, Congenital/genetics , Heart Defects, Congenital/physiopathology , Humans , Mice , Pedigree , Pregnancy , Young Adult , Zebrafish
17.
Hum Mol Genet ; 27(10): 1743-1753, 2018 05 15.
Article in English | MEDLINE | ID: mdl-29518248

ABSTRACT

LonP1 is a mitochondrial matrix protease whose selective substrate specificity is essential for maintaining mitochondrial homeostasis. Recessively inherited, pathogenic defects in LonP1 have been previously reported to underlie cerebral, ocular, dental, auricular and skeletal anomalies (CODAS) syndrome, a complex multisystemic and developmental disorder. Intriguingly, although classical mitochondrial disease presentations are well-known to exhibit marked clinical heterogeneity, the skeletal and dental features associated with CODAS syndrome are pathognomonic. We have applied whole exome sequencing to a patient with congenital lactic acidosis, muscle weakness, profound deficiencies in mitochondrial oxidative phosphorylation associated with loss of mtDNA copy number and MRI abnormalities consistent with Leigh syndrome, identifying biallelic variants in the LONP1 (NM_004793.3) gene; c.1693T > C predicting p.(Tyr565His) and c.2197G > A predicting p.(Glu733Lys); no evidence of the classical skeletal or dental defects observed in CODAS syndrome patients were noted in our patient. In vitro experiments confirmed the p.(Tyr565His) LonP1 mutant alone could not bind or degrade a substrate, consistent with the predicted function of Tyr565, whilst a second missense [p.(Glu733Lys)] variant had minimal effect. Mixtures of p.(Tyr565His) mutant and wild-type LonP1 retained partial protease activity but this was severely depleted when the p.(Tyr565His) mutant was mixed with the p.(Glu733Lys) mutant, data consistent with the compound heterozygosity detected in our patient. In summary, we conclude that pathogenic LONP1 variants can lead to a classical mitochondrial disease presentations associated with severe biochemical defects in oxidative phosphorylation in clinically relevant tissues.


Subject(s)
ATP-Dependent Proteases/genetics , Craniofacial Abnormalities/genetics , Eye Abnormalities/genetics , Growth Disorders/genetics , Hip Dislocation, Congenital/genetics , Leigh Disease/genetics , Mitochondrial Diseases/genetics , Mitochondrial Proteins/genetics , Osteochondrodysplasias/genetics , Tooth Abnormalities/genetics , Biopsy , Cell Line , Craniofacial Abnormalities/metabolism , Craniofacial Abnormalities/physiopathology , Exome/genetics , Eye Abnormalities/metabolism , Eye Abnormalities/physiopathology , Growth Disorders/metabolism , Growth Disorders/physiopathology , Hip Dislocation, Congenital/metabolism , Hip Dislocation, Congenital/physiopathology , Humans , Infant , Leigh Disease/metabolism , Leigh Disease/physiopathology , Male , Mitochondria/genetics , Mitochondria/pathology , Mitochondrial Diseases/metabolism , Mitochondrial Diseases/physiopathology , Muscle, Skeletal/physiopathology , Mutation , Osteochondrodysplasias/metabolism , Osteochondrodysplasias/physiopathology , Oxidative Phosphorylation , Tooth Abnormalities/metabolism , Tooth Abnormalities/physiopathology , Exome Sequencing
18.
Neurobiol Learn Mem ; 173: 107265, 2020 09.
Article in English | MEDLINE | ID: mdl-32531423

ABSTRACT

Kleefstra syndrome is a disorder caused by a mutation in the EHMT1 gene characterized in humans by general developmental delay, mild to severe intellectual disability and autism. Here, we characterized cumulative memory in the Ehmt1+/- mouse model using the Object Space Task. We combined conventional behavioral analysis with automated analysis by deep-learning networks, a session-based computational learning model, and a trial-based classifier. Ehmt1+/- mice showed more anxiety-like features and generally explored objects less, but the difference decreased over time. Interestingly, when analyzing memory-specific exploration, Ehmt1+/- show increased expression of cumulative memory, but a deficit in a more simple, control memory condition. Using our automatic classifier to differentiate between genotypes, we found that cumulative memory features are better suited for classification than general exploration differences. Thus, detailed behavioral classification with the Object Space Task produced a more detailed behavioral phenotype of the Ehmt1+/- mouse model.


Subject(s)
Behavior, Animal/physiology , Craniofacial Abnormalities/physiopathology , Exploratory Behavior/physiology , Heart Defects, Congenital/physiopathology , Intellectual Disability/physiopathology , Memory/physiology , Animals , Chromosome Deletion , Chromosomes, Human, Pair 9/genetics , Craniofacial Abnormalities/genetics , Deep Learning , Disease Models, Animal , Heart Defects, Congenital/genetics , Histone-Lysine N-Methyltransferase/genetics , Intellectual Disability/genetics , Male , Mice
19.
Am J Med Genet A ; 182(5): 1104-1116, 2020 05.
Article in English | MEDLINE | ID: mdl-32133772

ABSTRACT

Craniofacial morphogenesis is regulated in part by signaling from the Endothelin receptor type A (EDNRA). Pathogenic variants in EDNRA signaling pathway components EDNRA, GNAI3, PCLB4, and EDN1 cause Mandibulofacial Dysostosis with Alopecia (MFDA), Auriculocondylar syndrome (ARCND) 1, 2, and 3, respectively. However, cardiovascular development is normal in MFDA and ARCND individuals, unlike Ednra knockout mice. One explanation may be that partial EDNRA signaling remains in MFDA and ARCND, as mice with reduced, but not absent, EDNRA signaling also lack a cardiovascular phenotype. Here we report an individual with craniofacial and cardiovascular malformations mimicking the Ednra -/- mouse phenotype, including a distinctive micrognathia with microstomia and a hypoplastic aortic arch. Exome sequencing found a novel homozygous missense variant in EDNRA (c.1142A>C; p.Q381P). Bioluminescence resonance energy transfer assays revealed that this amino acid substitution in helix 8 of EDNRA prevents recruitment of G proteins to the receptor, abrogating subsequent receptor activation by its ligand, Endothelin-1. This homozygous variant is thus the first reported loss-of-function EDNRA allele, resulting in a syndrome we have named Oro-Oto-Cardiac Syndrome. Further, our results illustrate that EDNRA signaling is required for both normal human craniofacial and cardiovascular development, and that limited EDNRA signaling is likely retained in ARCND and MFDA individuals. This work illustrates a straightforward approach to identifying the functional consequence of novel genetic variants in signaling molecules associated with malformation syndromes.


Subject(s)
Craniofacial Abnormalities/genetics , Ear Diseases/genetics , Ear/abnormalities , Genetic Predisposition to Disease , Mandibulofacial Dysostosis/genetics , Receptor, Endothelin A/genetics , Animals , Craniofacial Abnormalities/physiopathology , Ear/physiopathology , Ear Diseases/physiopathology , GTP-Binding Protein alpha Subunits, Gi-Go/genetics , Gene Expression Regulation, Developmental/genetics , Humans , Loss of Function Mutation/genetics , Mandibulofacial Dysostosis/physiopathology , Mice , Mice, Knockout , Morphogenesis/genetics , Neural Crest/growth & development , Neural Crest/pathology , Phenotype , Signal Transduction/genetics
20.
Am J Med Genet A ; 182(10): 2391-2398, 2020 10.
Article in English | MEDLINE | ID: mdl-32770650

ABSTRACT

Al-Raqad syndrome (ARS) is a rare autosomal recessive congenital disorder, associated mainly with developmental delay, and intellectual disability. This syndrome is caused by mutations in DCPS, encoding scavenger mRNA decapping enzyme, which plays a role in the 3-prime-end mRNA decay pathway. Whole-exome sequencing was performed on an offspring of a consanguineous family presenting with developmental delay, intellectual disability, growth retardation, mild craniofacial abnormalities, cerebral and cerebellar atrophy, and white matter diffuse hypomyelination pattern. A novel biallelic missense variant, c.918G>C p. (Glu306Asp), in the DCPS gene was identified which was confirmed by sanger sequencing and segregation analysis subsequently. Few cases of ARS have been described up to now, and this study represents a 7-years-old boy presenting with central and peripheral nervous system impaired myelination in addition to ocular and dental manifestation, therefore outstretch both neuroimaging and clinical findings of this ultra-rare syndrome.


Subject(s)
Developmental Disabilities/genetics , Endoribonucleases/genetics , Intellectual Disability/genetics , Leukoencephalopathies/genetics , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/genetics , Abnormalities, Multiple/physiopathology , Child , Consanguinity , Craniofacial Abnormalities/diagnostic imaging , Craniofacial Abnormalities/genetics , Craniofacial Abnormalities/physiopathology , Developmental Disabilities/diagnostic imaging , Developmental Disabilities/physiopathology , Humans , Intellectual Disability/diagnostic imaging , Intellectual Disability/physiopathology , Leukoencephalopathies/diagnostic imaging , Leukoencephalopathies/physiopathology , Male , Mutation, Missense/genetics , Neuroimaging/methods , Pedigree , Phenotype , Exome Sequencing
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