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1.
Isr Med Assoc J ; 23(11): 708-713, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34811986

ABSTRACT

BACKGROUND: The recent increase in enterococcal urinary tract infections (EUTI) and the potential morbidity and mortality associated with inappropriate antimicrobial treatment underscores the need for early risk assessment and institution of appropriate empirical antimicrobial therapy. OBJECTIVES: To identify high-risk features associated with hospitalized patients with EUTI. METHODS: Demographic, clinical, laboratory, and bacteriological data of 285 patients hospitalized with UTI during 2016 were retrieved from the computerized database of Shamir Medical Center. Patients were divided into two groups: EUTI and non-EUTI (NEUTI), according to the presence or absence of enterococcus in the urine culture. The features of the two groups were compared. RESULTS: We obtained 300 urine cultures from 285 patients. Of the total, 80 patients (26.6%) had EUTI and 220 patients (73.3%) had NEUTI. A higher prevalence of urinary multi-bacterial cultures was found in EUTI compared to NEUTI patients (P < 0.01). Higher prevalence of permanent indwelling urinary catheter and dementia were found in hospitalized patients with community-acquired EUTI and nosocomial EUTI respectively (P = 0.02, P = 0.016) compared to patients with NEUTI. CONCLUSIONS: Indwelling urinary catheter and dementia are risk factors for EUTI in patients with community and hospital acquired infection, respectively.


Subject(s)
Anti-Infective Agents/therapeutic use , Dementia , Enterococcus , Gram-Positive Bacterial Infections , Risk Assessment/methods , Urinary Catheterization , Urinary Tract Infections , Aged , Anti-Infective Agents/classification , Catheters, Indwelling/adverse effects , Catheters, Indwelling/microbiology , Coinfection/epidemiology , Coinfection/microbiology , Dementia/diagnosis , Dementia/epidemiology , Enterococcus/drug effects , Enterococcus/isolation & purification , Female , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/etiology , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Hospitalization/statistics & numerical data , Humans , Israel/epidemiology , Male , Prevalence , Risk Factors , Treatment Outcome , Urinary Catheterization/adverse effects , Urinary Catheterization/methods , Urinary Catheters/adverse effects , Urinary Catheters/microbiology , Urinary Tract Infections/drug therapy , Urinary Tract Infections/etiology , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine
2.
BMC Infect Dis ; 20(1): 467, 2020 Jul 02.
Article in English | MEDLINE | ID: mdl-32615925

ABSTRACT

BACKGROUND: Urinary tract infection (UTI) caused by various pathogenic microorganisms is ubiquitous in the parts of the urinary system such as kidney, ureter, bladder, and urethra. Currently, clinical detection of UTI is mainly focused on urine culture; however, the diagnostic value of urine culture remains limited due to the time-consuming procedure and low detection rate, especially in patients who have used antibiotics. Generally, treatment for UTI relies on empirical medication rather than pathogen diagnosis, which leads to the inappropriate use of antimicrobial agents and a significant increase in resistant strains. Comparatively, metagenomic next-generation sequencing (mNGS) is capable of overcoming the disadvantages of clinical culture, and identifying pathogens for further treatment. CASE PRESENTATION: A 33-year-old male patient was admitted to hospital with a high fever and chills. None of his autoimmune disease or thyroid function related indicators were positive, and he had no risk of endocarditis. His white blood cell count, C-reactive protein, procalcitonin, interleukin 6, and neutrophil proportion were markedly elevated. He was initially diagnosed as having an infection of unknown etiology. Since empirical treatment of Sulperazon and Metronidazole did not relieve his symptoms, both the blood and urine specimens were examined using traditional culture, serological testing, and mNGS assay. Traditional culture and serological testing produced negative results, while the mNGS assay revealed the presence of a potential pathogen, Enterococcus faecalis, in the urine specimen, which was further confirmed by both Sanger sequencing and qPCR analysis. A CT scan of the patient's whole abdomen showed stones in the right kidney. Once targeted antibiotic therapy was administered, the patient recovered quickly. CONCLUSIONS: Our case illustrated that mNGS, as a novel culture-independent approach, demonstrated the capability of rapid, sensitive, and accurate pathogen identification. Furthermore, this technology provides strong support for guiding clinicians to determine appropriate treatment.


Subject(s)
Enterococcus faecalis/genetics , Gram-Positive Bacterial Infections/diagnosis , High-Throughput Nucleotide Sequencing/methods , Metagenomics/methods , Urinary Tract Infections/diagnosis , Adult , Anti-Bacterial Agents/therapeutic use , DNA, Bacterial/genetics , Follow-Up Studies , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Humans , Linezolid/therapeutic use , Male , Treatment Outcome , Urinary Tract Infections/drug therapy , Urinary Tract Infections/urine , Urinary Tract Infections/virology
3.
Infect Dis Obstet Gynecol ; 2020: 8398537, 2020.
Article in English | MEDLINE | ID: mdl-32395068

ABSTRACT

Introduction: The purpose of this study is to describe bacteriuria with regard to the uropathogens found in relation to the frequency of urine culture tests in a contemporary cohort of pregnant Danish women. Methods: A historical cohort study of 24,817 pregnant women registered in the Danish Fetal Medicine Database at Aarhus University Hospital, from 2010 to 2014. Social security numbers were linked to the microbiological database with the registration of 17,233 urine cultures in 8,807 women. Bacteriuria was defined as 1 × 105 CFU/ml, with a maximum of two urinary pathogens. Streptococcus agalactiae (GBS) was included with 1 × 104 CFU/ml. Data are presented as numbers and proportions in percent. Logistic regression on predictors are presented as crude and adjusted odds ratios (ORc/ORa) with 95% confidence intervals (CIs). Results: 42% had a urine sample culture test at the hospital-the majority only once during pregnancy. 96% of all urine culture tests were negative. The bacteriuria incidence was 5.6%. The most frequent uropathogenic bacteria isolated were Escherichia coli (49%), GBS (29%), and Enterococci (10%). We identified subgroups of women with increased likelihood of bacteriuria during pregnancy: age < 25 years, ORa 1.60 (CI 1.26 to 2.02, p < 0.001); age > 34 years, ORa 1.28 (CI 1.01 to 1.61, p = 0.040); Afro-Caribbean origin, ORa 1.872 (CI 1.13 to 3.07, p = 0.014); Asian origin, ORa 2.07 (CI 1.29 to 3.32, p = 0.002); and mixed ethnicity ORa 2.34 (CI 1.23 to 4.46, p = 0.010). Women delivering preterm were more likely to have an episode of bacteriuria during pregnancy OR 2.05 (CI 1.36 to 3.09, p = 0.001). Conclusions: 96% of urine culture tests in pregnant women are negative. Optimized urine sampling may change this. Escherichia coli and GBS are predominant uropathogens. Younger and elder women, certain ethnical groups, and women delivering preterm seem more likely to have bacteriuria during pregnancy.


Subject(s)
Bacteriuria/epidemiology , Escherichia coli Infections/urine , Gram-Positive Bacterial Infections/urine , Streptococcal Infections/urine , Adult , Age Factors , Bacteriuria/microbiology , Cohort Studies , Denmark/epidemiology , Enterococcus/isolation & purification , Escherichia coli/isolation & purification , Escherichia coli Infections/epidemiology , Ethnicity , Female , Gram-Positive Bacterial Infections/epidemiology , Hospitals, University/statistics & numerical data , Humans , Pregnancy , Pregnancy Complications, Infectious/epidemiology , Risk Factors , Streptococcal Infections/epidemiology , Streptococcus agalactiae/isolation & purification , Young Adult
4.
Eur J Pediatr ; 178(3): 363-368, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30569406

ABSTRACT

Diagnosing a urinary tract infection in children is often difficult due to non-specific symptoms and requires invasive and time-consuming procedures. Flow cytometry is a new and rapid method of analyzing urine to confirm or exclude UTIs. We have investigated the sensitivity and specificity of urine flow cytometry (Sysmex UF1000i) compared to conventional diagnostic techniques in a prospective study from January 1, 2014 until January 1, 2015. All children under 13 years of age with a suspicion of urinary tract infection were screened using both urine flow cytometry and urine culture. A urinary tract infection was defined as the combination of leukocyturia (≥ 25 leukocytes per µl) and a positive urine culture in the presence of clinical symptoms. A total number of 412 urine samples were collected, of which 63 cases (15.3%) were positive for a urinary tract infection. Receiver operating characteristic analysis showed an area under the curve of 0.97 (95% confidence interval h0.93-1.00) for the bacterial count. When using a cut-off value of 250 bacteria/µl in the presence of leukocyturia, the sensitivity for urinary tract infection is 0.97 with a negative predictive value of 97%, and the specificity is 0.91 with a positive predictive value of 90%.Conclusion: Flow cytometry-based bacterial and leukocyte count analysis is a time-efficient method of diagnosing or ruling out urinary tract infection in children, with a higher sensitivity and specificity than dipstick and microscopic analysis. What is known • Screening for urinary tract infections in children is difficult due to invasive and time-consuming procedures. • There is both over- and under-treatment of urinary tract infections due to the delays in accurate diagnosing. What is new • Flow cytometry is a rapid and accurate method to provide useful information in the diagnosis of urinary tract infection in children. When negative, flow cytometry can exclude urinary tract infection in children with a high degree of confidence. When flow cytometry is positive, the possibility of a urinary tract infection in children is increased.


Subject(s)
Bacterial Load/methods , Flow Cytometry , Leukocytes/metabolism , Urinary Tract Infections/diagnosis , Urinary Tract Infections/urine , Biomarkers/metabolism , Child , Child, Preschool , Female , Gram-Negative Bacterial Infections/diagnosis , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/urine , Gram-Positive Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Humans , Infant , Infant, Newborn , Male , Prospective Studies , Sensitivity and Specificity , Urinary Tract Infections/microbiology
5.
Pediatr Int ; 59(7): 786-792, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28390079

ABSTRACT

BACKGROUND: The aim of this study was to examine the sensitivity and specificity of pyuria-based diagnosis of urinary tract infection (UTI) in urine collected by transurethral catheterization, and the reliability of diagnosis of pyuria in urine collected in a perineal bag. The gold standard for UTI diagnosis is significant colony counts of a single organism in urine obtained in a sterile manner. METHODS: We enrolled 301 patients who underwent medical examination at the present hospital for possible UTI between January 2005 and December 2009. We collected 438 urine samples by transurethral catheterization. We investigated the accuracy of pyuria-based diagnosis of UTI using transurethral catheterization urine specimens, and the reliability of diagnosis of pyuria using bag-collected urine specimens. RESULTS: The false-negative rate of UTI diagnosis based on pyuria in transurethral catheterization urine sediments was 9.0%; there was no significant difference in the false-negative rate of UTI diagnosis between boys and girls. Approximately 28% of pyuria-positive bag-collected urine specimens were pyuria negative on transurethral catheterization; this rate was significantly higher in girls than in boys (56.7% vs. 8.9%, P < 0.0001). CONCLUSIONS: The absence of pyuria in transurethral catheterization urine sediments does not rule out UTI. Pyuria in bag-collected urine specimens frequently consists of urine leukocytes from external genitalia as well as from the urinary tract.


Subject(s)
Gram-Negative Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/diagnosis , Urinary Tract Infections/diagnosis , Adolescent , Child , Child, Preschool , False Negative Reactions , Female , Gram-Negative Bacterial Infections/urine , Gram-Positive Bacterial Infections/urine , Humans , Infant , Infant, Newborn , Male , Pyuria/diagnosis , Pyuria/urine , Retrospective Studies , Sensitivity and Specificity , Urinary Catheterization , Urinary Tract Infections/urine , Young Adult
6.
Anal Chem ; 85(22): 10717-24, 2013 Nov 19.
Article in English | MEDLINE | ID: mdl-24125497

ABSTRACT

Rapid and effective methods of pathogen identifications are of major interest in clinical microbiological analysis to administer timely tailored antibiotic therapy. Raman spectroscopy as a label-free, culture-independent optical method is suitable to identify even single bacteria. However, the low bacteria concentration in body fluids makes it difficult to detect their characteristic molecular fingerprint directly in suspension. Therefore, in this study, Raman spectroscopy is combined with dielectrophoresis, which enables the direct translational manipulation of bacteria in suspensions with spatial nonuniform electrical fields so as to perform specific Raman spectroscopic characterization. A quadrupole electrode design is used to capture bacteria directly from fluids in well-defined microsized regions. With live/dead fluorescence viability staining, it is verified, that the bacteria survive this procedure for the relevant range of field strengths. The dielectrophoretic enrichment of bacteria allows for obtaining high quality Raman spectra in dilute suspensions with an integration time of only one second. As proof-of-principle study, the setup was tested with Escherichia coli and Enterococcus faecalis, two bacterial strains that are commonly encountered in urinary tract infections. Furthermore, to verify the potential for dealing with real world samples, pathogens from patients' urine have been analyzed. With the additional help of multivariate statistical analysis, a robust classification model could be built and allowed the classification of those two strains within a few minutes. In contrast, the standard microbiological diagnostics are based on very time-consuming cultivation tests. This setup holds the potential to reduce the crucial parameter diagnosis time by orders of magnitude.


Subject(s)
Electrophoresis/methods , Enterococcus faecalis/isolation & purification , Escherichia coli/isolation & purification , Spectrum Analysis, Raman/methods , Urinary Tract Infections/classification , Urinary Tract Infections/microbiology , Enterococcus faecalis/pathogenicity , Escherichia coli/pathogenicity , Escherichia coli Infections/microbiology , Escherichia coli Infections/urine , Fluorescence , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Humans , Urinary Tract Infections/urine
8.
J Proteome Res ; 11(3): 1844-54, 2012 Mar 02.
Article in English | MEDLINE | ID: mdl-22292465

ABSTRACT

To address the shortcomings of urine culture for the rapid identification of urinary tract infection (UTI), we applied (1)H-nuclear magnetic resonance (NMR) spectroscopy as a surrogate method for fast screening of microorganisms. Study includes 682 urine samples from suspected UTI patients, 50 healthy volunteers, and commercially available standard strains of gram negative bacilli (GNB) (Escherichia coli, Pseudomonas aeruginosa, Klebsiella pneumonia, Enterobacter, Acinetobacter, Proteus mirabilis, Citrobacter frundii) and gram positive cocci (GPC) (Enterococcus faecalis, Streptococcus group B, Staphylococcus saprophyticus). Acetate, lactate, ethanol, succinate, creatinine, trimethylamine (TMA), citrate, trimethylamin-N-oxide, glycine, urea, and hippurate were measured by (1)H NMR spectroscopy. All urine specimens were evaluated with culture method. Multivariate discriminant function analysis (DFA) reveals that acetate, lactate, succinate, and formate were able to differentiate, with high accuracy (99.5%), healthy controls from UTI patients. This statistical analysis was also able to classify GNB to GPC infected urine samples with high accuracy (96%). This technique appears to be a promising, rapid, and noninvasive approach to probing GNB and GPC infected urine specimens with its distinguishing metabolic profile. The determination of infection will be very important for rapidly and efficiently measuring the efficacy of a tailored treatment, leading to prompt and appropriate care of UTI patients.


Subject(s)
Gram-Negative Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/microbiology , Urinary Tract Infections/microbiology , Adult , Area Under Curve , Case-Control Studies , Culture Media/chemistry , Female , Gram-Negative Bacteria/isolation & purification , Gram-Negative Bacteria/metabolism , Gram-Negative Bacterial Infections/diagnosis , Gram-Negative Bacterial Infections/urine , Gram-Positive Bacteria/isolation & purification , Gram-Positive Bacteria/metabolism , Gram-Positive Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/urine , Humans , Magnetic Resonance Spectroscopy , Metabolome , Middle Aged , Multivariate Analysis , ROC Curve , Urinalysis/methods , Urinary Tract Infections/diagnosis , Urinary Tract Infections/urine , Young Adult
9.
Acta Paediatr ; 101(5): e232-4, 2012 May.
Article in English | MEDLINE | ID: mdl-22211919

ABSTRACT

AIM: To inform that Actinobaculum schaalii can colonize the urine and cause urinary tract infection in children. METHODS: Urine samples were examined by wet smear microscopy, incubated in 5% CO(2) for 1-2 days, and species-specific real-time polymerase chain reaction (PCR) for A. schaalii was performed. RESULTS: In 5 of the 29 screened urines, A. schaalii was found only by real-time PCR in quantities equivalent to ≥ 10(4) -10(5) CFU/mL. In addition, A. schaalii was found in quantities equivalent to ≥ 10(6) CFU/mL by both culture and PCR in two children with a urinary tract infection and large numbers of leucocytes in the urine. CONCLUSION: Actinobaculum schaalii is CO(2)-dependent. Therefore, if there are clinical symptoms and/or a negative culture despite the presence of leucocytes in the urine, Gram staining and incubation in 5% CO(2) or species-specific real-time PCR should be performed to identify A. schaalii.


Subject(s)
Gram-Positive Bacteria/isolation & purification , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine , Adolescent , Child, Preschool , Female , Humans , Infant , Male , Retrospective Studies
10.
mSphere ; 6(3)2021 05 12.
Article in English | MEDLINE | ID: mdl-33980674

ABSTRACT

Gardnerella is a frequent member of the urogenital microbiota. Given the association between Gardnerella vaginalis and bacterial vaginosis (BV), significant efforts have been focused on characterizing this species in the vaginal microbiota. However, Gardnerella also is a frequent member of the urinary microbiota. In an effort to characterize the bacterial species of the urinary microbiota, we present here 10 genomes of urinary Gardnerella isolates from women with and without lower urinary tract symptoms. These genomes complement those of 22 urinary Gardnerella strains previously isolated and sequenced by our team. We included these genomes in a comparative genome analysis of all publicly available Gardnerella genomes, which include 33 urinary isolates, 78 vaginal isolates, and 2 other isolates. While once this genus was thought to consist of a single species, recent comparative genome analyses have revealed 3 new species and an additional 9 groups within Gardnerella Based upon our analysis, we suggest a new group for the species. We also find that distinction between these Gardnerella species/groups is possible only when considering the core or whole-genome sequence, as neither the sialidase nor vaginolysin genes are sufficient for distinguishing between species/groups despite their clinical importance. In contrast to the vaginal microbiota, we found that only five Gardnerella species/groups have been detected within the lower urinary tract. Although we found no association between a particular Gardnerella species/group(s) and urinary symptoms, further sequencing of urinary Gardnerella isolates is needed for both comprehensive taxonomic characterization and etiological classification of Gardnerella in the urinary tract.IMPORTANCE Prior research into the bacterium Gardnerella vaginalis has largely focused on its association with bacterial vaginosis (BV). However, G. vaginalis is also frequently found within the urinary microbiota of women with and without lower urinary tract symptoms as well as individuals with chronic kidney disease, interstitial cystitis, and BV. This prompted our investigation into Gardnerella from the urinary microbiota and all publicly available Gardnerella genomes from the urogenital tract. Our work suggests that while some Gardnerella species can survive in both the urinary tract and vagina, others likely cannot. This study provides the foundation for future studies of Gardnerella within the urinary tract and its possible contribution to lower urinary tract symptoms.


Subject(s)
Gardnerella/classification , Gardnerella/genetics , Genome, Bacterial , Gram-Positive Bacterial Infections/urine , Microbiota/genetics , Vagina/microbiology , Vaginosis, Bacterial/urine , Female , Gardnerella/pathogenicity , Genotype , Gram-Positive Bacterial Infections/microbiology , Humans , Microbiota/physiology , Phylogeny , RNA, Ribosomal, 16S/genetics , Urinary Tract Infections/microbiology , Vaginosis, Bacterial/microbiology , Whole Genome Sequencing
11.
J Infect Dev Ctries ; 14(12): 1780-1482, 2020 12 31.
Article in English | MEDLINE | ID: mdl-33378295

ABSTRACT

INTRODUCTION: Enterococcus hirae (E. hirae) constitutes less than 1% of the enterococci strains in human clinical specimens. In this article, we report the first case of urinary tract infection-related bacteremia due to E. hirae from Turkey. CASE PRESENTATION: A 74-year-old male patient with a history of coronary artery disease, hypertension, and chronic renal failure was admitted to the emergency department with abdominal pain, dysuria, and fever. The urine sample collected from the urinary catheter resulted as ampicillin-sensitive E. hirae. On the 4th day of hospitalization, E. hirae growth with the same sensitivity pattern was also reported in blood culture. Intravenous ampicillin 4×2 g/day treatment was initiated. There was no growth in subsequent blood and urine cultures. Fever resolved and general condition improved. The patient was discharged on the thirteenth day with clinical improvement after moxifloxacin treatment for four days and ampicillin treatment for nine days. DISCUSSION: The patient's medical history included risk factors for enterococcal bacteremia. There are a limited number of reports in the literature describing human infections caused by E. hirae. The reason for the rare isolation of E. hirae from clinical specimens may be the difficulty of identifying with standard diagnostic approaches. CONCLUSIONS: For diagnostic purposes, as in our case, rapid and high sensitive diagnostic methods such as Matrix-assisted Laser Desorption/Ionization Time of Flight (MALDI-TOF) and molecular techniques may be useful to guide the selection of the least toxic and optimal duration of antibiotic treatment.


Subject(s)
Bacteremia/diagnosis , Enterococcus hirae/pathogenicity , Gram-Positive Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/urine , Urinary Tract Infections/complications , Urinary Tract Infections/microbiology , Aged , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Bacteremia/etiology , Enterococcus hirae/drug effects , Gram-Positive Bacterial Infections/microbiology , Humans , Male , Risk Factors , Turkey , Urinary Tract Infections/diagnosis
12.
Vet Microbiol ; 136(1-2): 130-4, 2009 Apr 14.
Article in English | MEDLINE | ID: mdl-19056189

ABSTRACT

Bacterial urinary tract infections (UTIs) can be detected in feline urine submitted for urinalysis and culture as part of the diagnostic workup for a variety of conditions. Our aim was to investigate urinalysis and culture findings in urine specimens from cats with no history of lower urinary tract signs. Study inclusion criteria required cystocentesis specimens from cats with no history of lower urinary tract signs, inappropriate urination, or previous UTI (including pyelonephritis). Of 132 specimens, 38 were culture positive and 94 were culture negative. Culture positive urine specimens were more likely to come from older female cats (p=0.03, p<0.001, respectively) and they had higher pH (p=0.001), erythrocyte (p=0.013) and leukocyte counts (p=0.003) than culture negative urine specimens. Gram-negative infected specimens (n=15) had lower urine specific gravity and higher leukocyte counts than Gram-positive infected specimens (n=21; p=0.0012, p=0.005, respectively) and culture negative specimens (p=0.003, p<0.0001, respectively). Urine protein:creatinine ratio was higher in Gram-negative infected urine than in culture negative urine (p=0.013). Enterococcus faecalis was the most commonly isolated bacteria (19 of a total of 44 isolates; 43.2%) and E. coli phylogenetic group B2 was the most common Gram-negative isolate (14 of a total of 44 isolates; 31.8%). We conclude that feline bacterial urinary tract infections can occur in cats without lower urinary tract signs, particularly older females and that they are associated with high urine erythrocyte and leukocyte counts.


Subject(s)
Cat Diseases/microbiology , Gram-Negative Bacteria/isolation & purification , Gram-Negative Bacterial Infections/veterinary , Gram-Positive Bacteria/isolation & purification , Gram-Positive Bacterial Infections/veterinary , Urinary Tract Infections/veterinary , Animals , Cat Diseases/urine , Cats , Erythrocyte Count/veterinary , Female , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/urine , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Leukocyte Count/veterinary , Male , Retrospective Studies , Specific Gravity , Statistics, Nonparametric , Urinalysis/veterinary , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine
13.
BMC Geriatr ; 9: 32, 2009 Jul 27.
Article in English | MEDLINE | ID: mdl-19635163

ABSTRACT

BACKGROUND: Few studies have evaluated dipstick urinalysis for elderly and practically none present confidence intervals. Furthermore, most previous studies combine all bacteria species in a "positive culture". Thus, their evaluation may be inappropriate due to Yule-Simpson's paradox. The aim of this study was to evaluate diagnostic accuracy of dipstick urinalysis for the elderly in nursing homes. METHODS: In this cross-sectional study voided urine specimens were collected from 651 elderly individuals in nursing homes. Dipstick urinalysis for nitrite, leukocyte esterase and urine culture were performed. Sensitivity, specificity, positive and negative predictive values with 95% confidence intervals were calculated. Visual readings were compared to readings with a urine chemistry analyzer. RESULTS: 207/651 (32%) of urine cultures showed growth of a potentially pathogenic bacterium. Combining the two dipsticks improved test characteristics slightly compared to using only one of the dipsticks. When both dipsticks are negative, presence of potentially pathogenic bacteria can be ruled out with a negative predictive value of 88 (84-92)%. Visual and analyzer readings had acceptable agreement. CONCLUSION: When investigating for bacteriuria in elderly people at nursing homes we suggest nitrite and leukocyte esterase dipstick be combined. There are no clinically relevant differences between visual and analyzer dipstick readings. When dipstick urinalysis for nitrite and leukocyte esterase are both negative it is unlikely that the urine culture will show growth of potentially pathogenic bacteria and in a patient with an uncomplicated illness further testing is unnecessary.


Subject(s)
Bacteriuria/diagnosis , Bacteriuria/urine , Homes for the Aged/standards , Nursing Homes/standards , Reagent Strips/standards , Aged , Aged, 80 and over , Bacteriuria/microbiology , Carboxylic Ester Hydrolases/urine , Colony Count, Microbial/methods , Colony Count, Microbial/standards , Cross-Sectional Studies , Enterococcus faecalis , Escherichia coli Infections/diagnosis , Escherichia coli Infections/microbiology , Escherichia coli Infections/urine , Female , Gram-Positive Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Humans , Klebsiella Infections/diagnosis , Klebsiella Infections/microbiology , Klebsiella Infections/urine , Male , Middle Aged , Nitrites/urine , Predictive Value of Tests
14.
Article in Ro | MEDLINE | ID: mdl-20524392

ABSTRACT

OBJECTIVES: We propose a comparative study of sensitivity to antibiotics of Gram-positive germs isolated in urocultures from patients in ambulatory and two wards with surgical risk (urology and obstetrics-gynaecology), and also to establish the resistance phenotypes of these strains. MATERIAL AND METHOD: 124 strains of Gram-positive cocci were studied: 28 S. aureus strains, 24 strains of coagulase-negative staphylococcus (CNS), 23 Streptococcus aglactiae strains, 1 Streptococcus anginosus strain and 48 Enterococcus spp. strains. The isolated strains came from 4398 urocultures (1889--ambulatory, 1871--urology, 629--obstetrics-gynaecology). Testing of antibiotic sensitivity was performed through Kirby-Bauer disk-diffusion method, with automatic phenotyping (Osiris Evolution system). RESULTS: In ambulatory, the wild phenotype was predominant in all isolated strains (33.33% S. aureus, 50% CNS, 100% Streptococcus aglactiae, 60% Enterococcus spp.). In the urology ward, the following multiresistant strains were isolated: 9 MRSA strains (47.36%), 1 MRSE strain (100%), 1 VRE strain (4.34%). In the obstetrics-gynaecology ward, 7 strains showed multiple antibiotic resistance: 4 MRSA strains (66.66%), 2 MRSE strains (50%), 1 VRE strain (6.66%). CONCLUSIONS: Multiresistant strains were isolated in hospital environment, which can be explained by the improper use of antibiotics, the instrumental approach of the urinary tract, and the existence of risk factors in the patients admitted in the above-mentioned wards. Enforcement of efficient nosocomial infection control measures is advisable, as well as a policy for rational antibiotic use.


Subject(s)
Disk Diffusion Antimicrobial Tests , Drug Resistance, Multiple, Bacterial , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Gram-Positive Cocci/isolation & purification , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine , Drug Resistance, Multiple, Bacterial/drug effects , Gram-Positive Bacterial Infections/drug therapy , Humans , Inpatients/statistics & numerical data , Obstetrics and Gynecology Department, Hospital/statistics & numerical data , Outpatients/statistics & numerical data , Treatment Outcome , Urinary Tract Infections/drug therapy , Urology Department, Hospital/statistics & numerical data
15.
Article in Ro | MEDLINE | ID: mdl-20524391

ABSTRACT

Urine bacteriological examination is one of the most frequently asked for examinations, in ambulatory as well as in hospitals, regarding specialty prophyle. The present study comprises a group of 3971 pacients that were sent to the laboratory for uroculture and showed a percentage of only 21.85% significant urocultures--the etiological groups most frequently isolated being Gram-negative bacilli--96.05%, respectively Escherichia sp. 76.95%, Klebsiella sp. 14.68%, Proteus sp. 4.66%. Out of the Gram-positive bacteria we encountered only group B streptococcus and Staphylococcus epidermidis. Colimycine, phosphomycine, fluorurated quinolones were the most active on the Gram-negative flora, and the Gram-positive cocci were most frequently sensitive to amikacine, amoxycyline and ceftazidim.


Subject(s)
Ambulatory Care/statistics & numerical data , Gram-Negative Bacterial Infections/diagnosis , Gram-Positive Bacterial Infections/diagnosis , Urinary Tract Infections/diagnosis , Algorithms , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Community-Acquired Infections/diagnosis , Drug Resistance, Microbial , Gram-Negative Bacteria/drug effects , Gram-Negative Bacteria/isolation & purification , Gram-Negative Bacterial Infections/drug therapy , Gram-Negative Bacterial Infections/epidemiology , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/urine , Gram-Positive Bacteria/drug effects , Gram-Positive Bacteria/isolation & purification , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/epidemiology , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Humans , Microbial Sensitivity Tests , Romania/epidemiology , Urinary Tract Infections/drug therapy , Urinary Tract Infections/epidemiology , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine
16.
J Med Microbiol ; 68(4): 549-554, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30806614

ABSTRACT

To determine micro-organisms attached to removed urethral catheters and relate this to patient-specific information. Indwelling urethral catheters were collected from patients at a UK teaching hospital. The balloon and lumen were sonicated, and micro-organisms were enumerated. Catheter specimen urine results were retrospectively reviewed. Escherichia coli and Enterococcus faecalis were the most common isolates from 61 catheters. 19.7% of patients received antibiotics and 25 % of those had a multi-drug-resistant (MDR) organism in the lumen. Only 2.04% of catheters from patients not receiving antibiotics had a MDR organism. All lumens were colonized irrespective of antibiotic use. Symptom presentation did not correlate with numbers of colonizing organisms or species. Despite heavy colonization, only 8/61 patients were symptomatic. Indwelling urinary catheters in place for ≥10 days were universally colonized and there was no correlation with symptom presentation. Symptom presentation remains the most important factor for defining catheter-associated urinary tract infection.


Subject(s)
Asymptomatic Infections/therapy , Catheters, Indwelling/microbiology , Enterobacteriaceae Infections/urine , Gram-Positive Bacterial Infections/urine , Urinary Catheters/microbiology , Adult , Aged , Anti-Bacterial Agents/therapeutic use , Bacterial Adhesion/drug effects , Colony Count, Microbial , Enterobacteriaceae/drug effects , Enterobacteriaceae/isolation & purification , Enterobacteriaceae Infections/drug therapy , Enterococcus faecalis/drug effects , Enterococcus faecalis/isolation & purification , Escherichia coli/drug effects , Escherichia coli/isolation & purification , Escherichia coli Infections/drug therapy , Escherichia coli Infections/urine , Female , Gram-Positive Bacterial Infections/drug therapy , Humans , Male , Middle Aged , Retrospective Studies , Urinary Catheterization/adverse effects , Urinary Tract Infections/drug therapy , Urinary Tract Infections/microbiology
17.
J Infect Public Health ; 12(3): 330-336, 2019.
Article in English | MEDLINE | ID: mdl-30522892

ABSTRACT

BACKGROUND: Urinary tract infection (UTI) is a common health-associated problem worldwide. Like other medical conditions, UTI patients may suffer from poor treatment outcomes due to the emergence of antimicrobial resistance. Determining patterns of antimicrobial susceptibility in uropathogens will guide physicians to choose the best antibiotics for treating affected patients. In this project we aimed to evaluate the frequencies of pathogens associated with UTI and their antimicrobial susceptibility patterns. METHODS: This study was conducted on 2692 urine samples of patients visited Rizgary Teaching Hospital in Erbil city. Aerobic bacterial growth identification and antimicrobial susceptibility tests were performed using VITEK®2 compact system. RESULTS: Our data show that more than 20% of all studied samples were negative for bacterial growth; only 16.72% of them were pathogenic bacteria in which 82.44% of them were Gram negative bacteria (GNB) and the rest were Gram positive bacteria (GPB). Escherichia coli was the most frequent, and Acinetobacter baumannii was the most resistant GNB. Staphylococcus haemolyticus was the most frequent, and Enterococcus faecalis was the most resistant GPB. In general GNB were highly resistant to Ticarcillin and Cefepime, and GPB were also resistant to Ticarcillin, and Tigecycline antibiotics. CONCLUSIONS: The amount of negative culture growth indicates that symptoms only based diagnosis for UTI detection is unreliable. E. coli is the most UTI related pathogen, E. faecalis and A. baumannii were among highly antibiotic resistant bacteria. Finally, since many of GNG and GPB isolates were resistant to several antibiotics, there might be a high possibility for multi drug resistant among local population in Erbil.


Subject(s)
Anti-Bacterial Agents/pharmacology , Gram-Negative Bacteria/drug effects , Gram-Negative Bacterial Infections/epidemiology , Gram-Positive Bacteria/drug effects , Gram-Positive Bacterial Infections/epidemiology , Urinary Tract Infections/epidemiology , Acinetobacter baumannii/drug effects , Acinetobacter baumannii/isolation & purification , Anti-Bacterial Agents/therapeutic use , Enterococcus faecalis/drug effects , Enterococcus faecalis/isolation & purification , Escherichia coli/drug effects , Escherichia coli/isolation & purification , Gram-Negative Bacteria/isolation & purification , Gram-Negative Bacterial Infections/drug therapy , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/urine , Gram-Positive Bacteria/isolation & purification , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/urine , Humans , Iraq/epidemiology , Microbial Sensitivity Tests , Prevalence , Urinary Tract Infections/drug therapy , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine
19.
J Infect ; 76(4): 354-360, 2018 04.
Article in English | MEDLINE | ID: mdl-29253561

ABSTRACT

OBJECTIVES: Aerococcus urinae and Aerococcus sanguinicola cause urinary tract infections (UTIs) and antibiotic treatment recommendations are solely based on in vitro findings and limited clinical experience. Our objective was to investigate the effectiveness of different treatment strategies in aerococcal UTI through a prospective observational study. METHODS: Urine samples with aerococci were identified and patients were enrolled. The aerococci were subjected to Etests. Information on clinical symptoms, and the treatment given, was collected. Patients were interviewed after the conclusion of treatment to assess clinical cure and a control urine culture assessed the microbiological cure. RESULTS: Of 31,629 urine samples, 144 grew aerococci and fulfilled the inclusion criteria. 91 patients gave consent and the 72 patients with UTI were assessed for treatment outcome. 53 patients had A. urinae UTI, while 19 had A. sanguinicola UTI. Nitrofurantoin was most commonly prescribed, achieving clinical and microbiological success in 71/76% of cases of A. urinae UTI, and 42/50% of cases of A. sanguinicola UTI. Pivmecillinam achieved success in patients with A. urinae cystitis and ciprofloxacin in patients with pyelonephritis. CONCLUSIONS: Our results support that nitrofurantoin is a valid option for the treatment of cystitis caused by A. urinae.


Subject(s)
Aerococcus/drug effects , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/urine , Urinary Tract Infections/drug therapy , Aerococcus/isolation & purification , Aged , Aged, 80 and over , Anti-Bacterial Agents/therapeutic use , Cystitis/drug therapy , Cystitis/microbiology , Disk Diffusion Antimicrobial Tests , Female , Humans , Male , Microbial Sensitivity Tests , Middle Aged , Nitrofurantoin/therapeutic use , Prospective Studies , Sweden , Treatment Outcome , Urinary Tract Infections/microbiology
20.
Clin Microbiol Infect ; 13(1): 106-8, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17184299

ABSTRACT

A vancomycin-resistant Enterococcus faecium isolate from the urine of a liver transplant patient in Stockholm was found to contain a vanD gene. The sequence of the vanD PCR product shared 100% identity with the vanD5 allele. The isolate was resistant to a relatively high level of vancomycin (128 mg/L) and a low level of teicoplanin (4 mg/L). This is the first VanD-type vancomycin-resistant E. faecium isolate reported in Sweden. The emergence of this strain reinforces the necessity of infection control efforts to interrupt the spread of these organisms.


Subject(s)
Anti-Bacterial Agents/pharmacology , Enterococcus faecium/drug effects , Gram-Positive Bacterial Infections/microbiology , Postoperative Complications/microbiology , Vancomycin/pharmacology , Alleles , Bacterial Proteins/genetics , Enterococcus faecium/isolation & purification , Genes, Bacterial , Gram-Positive Bacterial Infections/urine , Humans , Liver Transplantation , Peptide Synthases/genetics , Postoperative Complications/urine , Sweden , Teicoplanin/pharmacology , Vancomycin Resistance/genetics
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