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1.
EMBO J ; 35(21): 2270-2284, 2016 11 02.
Article in English | MEDLINE | ID: mdl-27670760

ABSTRACT

The large GTPase dynamin is the first protein shown to catalyze membrane fission. Dynamin and its related proteins are essential to many cell functions, from endocytosis to organelle division and fusion, and it plays a critical role in many physiological functions such as synaptic transmission and muscle contraction. Research of the past three decades has focused on understanding how dynamin works. In this review, we present the basis for an emerging consensus on how dynamin functions. Three properties of dynamin are strongly supported by experimental data: first, dynamin oligomerizes into a helical polymer; second, dynamin oligomer constricts in the presence of GTP; and third, dynamin catalyzes membrane fission upon GTP hydrolysis. We present the two current models for fission, essentially diverging in how GTP energy is spent. We further discuss how future research might solve the remaining open questions presently under discussion.


Subject(s)
Cell Membrane/physiology , Dynamins/physiology , Animals , Guanosine Triphosphate/physiology , Humans
2.
J Biol Chem ; 290(33): 20325-35, 2015 Aug 14.
Article in English | MEDLINE | ID: mdl-26124275

ABSTRACT

The effects of Kil peptide from bacteriophage λ on the assembly of Escherichia coli FtsZ into one subunit thick protofilaments were studied using combined biophysical and biochemical methods. Kil peptide has recently been identified as the factor from bacteriophage λ responsible for the inhibition of bacterial cell division during lytic cycle, targeting FtsZ polymerization. Here, we show that this antagonist blocks FtsZ assembly into GTP-dependent protofilaments, producing a wide distribution of smaller oligomers compared with the average size of the intact protofilaments. The shortening of FtsZ protofilaments by Kil is detectable at concentrations of the peptide in the low micromolar range, the mid-point of the inhibition being close to its apparent affinity for GDP-bound FtsZ. This antagonist not only interferes with FtsZ assembly but also reverses the polymerization reaction. The negative regulation by Kil significantly reduces the GTPase activity of FtsZ protofilaments, and FtsZ polymers assembled in guanosine-5'-[(α,ß)-methyleno]triphosphate are considerably less sensitive to Kil. Our results suggest that, at high concentrations, Kil may use an inhibition mechanism involving the sequestration of FtsZ subunits, similar to that described for other inhibitors like the SOS response protein SulA or the moonlighting enzyme OpgH. This mechanism is different from those employed by the division site selection antagonists MinC and SlmA. This work provides new insight into the inhibition of FtsZ assembly by phages, considered potential tools against bacterial infection.


Subject(s)
Bacteria/cytology , Bacterial Proteins/physiology , Bacteriophage lambda/chemistry , Cell Division/physiology , Cytoskeletal Proteins/physiology , Peptides/physiology , Viral Proteins/chemistry , Bacterial Proteins/chemistry , Biopolymers/chemistry , Cytoskeletal Proteins/chemistry , Guanosine Triphosphate/physiology
3.
EMBO J ; 31(4): 1014-27, 2012 Feb 15.
Article in English | MEDLINE | ID: mdl-22157747

ABSTRACT

Vesicle budding from the endoplasmic reticulum (ER) employs a cycle of GTP binding and hydrolysis to regulate assembly of the COPII coat. We have identified a novel mutation (sec24-m11) in the cargo-binding subunit, Sec24p, that specifically impacts the GTP-dependent generation of vesicles in vitro. Using a high-throughput approach, we defined genetic interactions between sec24-m11 and a variety of trafficking components of the early secretory pathway, including the candidate COPII regulators, Sed4p and Sec16p. We defined a fragment of Sec16p that markedly inhibits the Sec23p- and Sec31p-stimulated GTPase activity of Sar1p, and demonstrated that the Sec24p-m11 mutation diminished this inhibitory activity, likely by perturbing the interaction of Sec24p with Sec16p. The consequence of the heightened GTPase activity when Sec24p-m11 is present is the generation of smaller vesicles, leading to accumulation of ER membranes and more stable ER exit sites. We propose that association of Sec24p with Sec16p creates a novel regulatory complex that retards the GTPase activity of the COPII coat to prevent premature vesicle scission, pointing to a fundamental role for GTP hydrolysis in vesicle release rather than in coat assembly/disassembly.


Subject(s)
COP-Coated Vesicles/physiology , Guanosine Triphosphate/metabolism , Guanosine Triphosphate/physiology , Membrane Proteins/physiology , Saccharomyces cerevisiae Proteins/physiology , Membrane Proteins/chemistry , Microscopy, Electron , Microscopy, Fluorescence , Models, Molecular , Saccharomyces cerevisiae Proteins/chemistry , Two-Hybrid System Techniques
4.
J Biol Chem ; 289(44): 30645-30656, 2014 Oct 31.
Article in English | MEDLINE | ID: mdl-25237193

ABSTRACT

Drp1 is a dynamin-like GTPase that mediates mitochondrial and peroxisomal division in a process dependent on self-assembly and coupled to GTP hydrolysis. Despite the link between Drp1 malfunction and human disease, the molecular details of its membrane activity remain poorly understood. Here we reconstituted and directly visualized Drp1 activity in giant unilamellar vesicles. We quantified the effect of lipid composition and GTP on membrane binding and remodeling activity by fluorescence confocal microscopy and flow cytometry. In contrast to other dynamin relatives, Drp1 bound to both curved and flat membranes even in the absence of nucleotides. We also found that Drp1 induced membrane tubulation that was stimulated by cardiolipin. Moreover, Drp1 promoted membrane tethering dependent on the intrinsic curvature of the membrane lipids and on GTP. Interestingly, Drp1 concentrated at membrane contact surfaces and, in the presence of GTP, formed discrete clusters on the vesicles. Our findings support a role of Drp1 not only in the formation of lipid tubes but also on the stabilization of tightly apposed membranes, which are intermediate states in the process of mitochondrial fission.


Subject(s)
Dynamins/physiology , Mitochondrial Dynamics , Mitochondrial Membranes/physiology , Animals , Cardiolipins/physiology , Cells, Cultured , Dynamins/chemistry , Guanosine Triphosphate/physiology , Humans , Liposomes/chemistry , Membrane Lipids/chemistry , Membrane Lipids/metabolism , Mice , Protein Binding , Protein Structure, Quaternary , Protein Transport
5.
J Inherit Metab Dis ; 37(3): 353-7, 2014 May.
Article in English | MEDLINE | ID: mdl-24154984

ABSTRACT

BACKGROUND: Valproic acid (VPA) is an effective antiepileptic drug that may induce progressive microvesicular steatosis. The impairment of mitochondrial function may be an important metabolic effect of VPA treatment with potential adverse consequences. OBJECTIVE: To investigate the influence of VPA on the activity of GTP- and ATP-specific succinate:CoA ligases (G-SUCL and A-SUCL). METHODS: The GTP- and ATP-specific SUCL activities were measured in human fibroblasts in the reverse direction, i.e. the formation of succinyl-CoA. These were assessed at different concentrations of succinate in the presence of VPA, valproyl-CoA and zinc chloride, an established inhibitor of the enzymes. Activities were measured using an optimized HPLC procedure. RESULTS: Valproyl-CoA (1 mM) inhibited the activity of A-SUCL and G-SUCL by 45-55% and 25-50%, respectively. VPA (1 mM) had no influence on the activity of the two enzymes. DISCUSSION: Valproyl-CoA appears to affect the activity of SUCL, especially with the ATP-specific enzyme. Considering the key role of SUCL in the Krebs cycle, interference with its activity might impair the cellular energy status. Moreover, A-SUCL is bound to the nucleoside diphosphate kinase (NDPK), which is responsible for the mitochondrial (deoxy)nucleotide synthesis. An inhibition of A-SUCL might influence the activity of NDPK inducing an imbalance of nucleotides in the mitochondria and eventually mitochondrial DNA depletion. This may account for the potential liver failure associated with valproate therapy, reported in patients with deficiencies within the mitochondrial DNA replicase system such as polymerase gamma 1.


Subject(s)
Acyl Coenzyme A/pharmacology , Adenosine Triphosphate/physiology , Guanosine Triphosphate/physiology , Succinate-CoA Ligases/antagonists & inhibitors , DNA, Mitochondrial/metabolism , Humans , Liver Failure/chemically induced , Nucleoside-Diphosphate Kinase/physiology , Valproic Acid/adverse effects , Valproic Acid/pharmacology
6.
Proc Natl Acad Sci U S A ; 108(39): 16283-8, 2011 Sep 27.
Article in English | MEDLINE | ID: mdl-21930898

ABSTRACT

The mechanisms governing atlastin-mediated membrane fusion are unknown. Here we demonstrate that a three-helix bundle (3HB) within the middle domain is required for oligomerization. Mutation of core hydrophobic residues within these helices inactivates atlastin function by preventing membrane tethering and the subsequent fusion. GTP binding induces a conformational change that reorients the GTPase domain relative to the 3HB to permit self-association, but the ability to hydrolyze GTP is required for full fusion, indicating that nucleotide binding and hydrolysis play distinct roles. Oligomerization of atlastin stimulates its ability to hydrolyze GTP, and the energy released drives lipid bilayer merger. Mutations that prevent atlastin self-association also abolish oligomerization-dependent stimulation of GTPase activity. Furthermore, increasing the distance of atlastin complex formation from the membrane inhibits fusion, suggesting that this distance is crucial for atlastin to promote fusion.


Subject(s)
GTP-Binding Proteins/physiology , Guanosine Triphosphate/physiology , Membrane Proteins/physiology , Animals , Base Sequence , DNA Primers , Drosophila , Guanosine Triphosphate/metabolism , HeLa Cells , Humans , Hydrolysis
7.
Biochemistry ; 52(40): 7071-81, 2013 Oct 08.
Article in English | MEDLINE | ID: mdl-24007276

ABSTRACT

FtsZ polymerizes to form a cytokinetic ring at the center of a bacterial cell, which engineers bacterial cell division. FtsZ consists of N-terminal and C-terminal core domains followed by a C-terminal spacer and a conserved C-terminal tail region. Though it has been reported that both N- and C-domains can fold independently, the assembly behaviors of the N- and C-domains are not clear. In this study, we created five truncated constructs of Bacillus subtilis FtsZ, two N-domain and three C-domain constructs, and expressed and purified them. We determined their assembly properties and their effect on the assembly of full-length FtsZ to gain insight into the mechanism of FtsZ polymerization. We found that the N-domain of B. subtilis FtsZ can polymerize on its own in a GTP-dependent manner. Further, we obtained evidence indicating that the N-domain could bind to GTP but could not hydrolyze GTP by itself. In addition, the N-domain was found to inhibit the assembly of full-length FtsZ. Interestingly, the N-domain was found to enhance the GTPase activity of full-length FtsZ. An analysis of the effects of the N- and C-domains on FtsZ assembly indicated that the assembly of FtsZ might be directional. The work has provided new insight into the assembly characteristics of FtsZ domains and the mechanism of FtsZ polymerization.


Subject(s)
Bacterial Proteins/biosynthesis , Cytoskeletal Proteins/biosynthesis , Bacillus subtilis/cytology , Bacillus subtilis/metabolism , Bacterial Proteins/isolation & purification , Cell Division/physiology , Cloning, Molecular , Cytoskeletal Proteins/isolation & purification , GTP Phosphohydrolases/metabolism , Guanosine Triphosphate/physiology , Protein Multimerization , Protein Structure, Tertiary
8.
Cell Metab ; 5(4): 253-64, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17403370

ABSTRACT

Nucleotide-specific isoforms of the tricarboxylic acid (TCA) cycle enzyme succinyl-CoA synthetase (SCS) catalyze substrate-level synthesis of mitochondrial GTP (mtGTP) and ATP (mtATP). While mtATP yield from glucose metabolism is coupled with oxidative phosphorylation and can vary, each molecule of glucose metabolized within pancreatic beta cells produces approximately one mtGTP, making mtGTP a potentially important fuel signal. In INS-1 832/13 cells and cultured rat islets, siRNA suppression of the GTP-producing pathway (DeltaSCS-GTP) reduced glucose-stimulated insulin secretion (GSIS) by 50%, while suppression of the ATP-producing isoform (DeltaSCS-ATP) increased GSIS 2-fold. Insulin secretion correlated with increases in cytosolic calcium, but not with changes in NAD(P)H or the ATP/ADP ratio. These data suggest a role for mtGTP in controlling pancreatic GSIS through modulation of mitochondrial metabolism, possibly involving mitochondrial calcium. Furthermore, in light of its tight coupling to TCA oxidation rates, mtGTP production may serve as an important molecular signal of TCA-cycle activity.


Subject(s)
Glucose/pharmacology , Guanosine Triphosphate/physiology , Insulin/metabolism , Mitochondria/drug effects , Animals , Calcium/metabolism , Cells, Cultured , Energy Metabolism/physiology , Guanosine Triphosphate/analysis , Insulin Secretion , Insulin-Secreting Cells/drug effects , Insulin-Secreting Cells/metabolism , Mitochondria/chemistry , Models, Biological , Oxidation-Reduction , RNA, Small Interfering/pharmacology , Rats , Rats, Sprague-Dawley , Succinate-CoA Ligases/antagonists & inhibitors , Succinate-CoA Ligases/genetics
9.
EMBO J ; 27(1): 27-37, 2008 Jan 09.
Article in English | MEDLINE | ID: mdl-18079695

ABSTRACT

The GTPase dynamin is a mechanochemical enzyme involved in membrane fission, but the molecular nature of its membrane interactions and their regulation by guanine nucleotides and protein effectors remain poorly characterized. Using site-directed fluorescence labeling and several independent fluorescence spectroscopic techniques, we have developed robust assays for the detection and real-time monitoring of dynamin-membrane and dynamin-dynamin interactions. We show that dynamin interacts preferentially with highly curved, PIP2-dense membranes and inserts partially into the lipid bilayer. Our kinetic measurements further reveal that cycles of GTP binding and hydrolysis elicit major conformational rearrangements in self-assembled dynamin that favor dynamin-membrane association and dissociation, respectively. Sorting nexin 9, an abundant dynamin partner, transiently stabilizes dynamin on the membrane at the onset of stimulated GTP hydrolysis and may function to couple dynamin's mechanochemical conformational changes to membrane destabilization. Amphiphysin I has the opposite effect. Thus, dynamin's mechanochemical properties on a membrane surface are dynamically regulated by its GTPase cycle and major binding partners.


Subject(s)
Cell Membrane/enzymology , Dynamin I/metabolism , Guanosine Triphosphate/physiology , Animals , Cell Membrane/genetics , Cells, Cultured , Dynamin I/chemistry , Dynamin I/genetics , Humans , Insecta/genetics , Lipid Bilayers/chemistry , Lipid Bilayers/metabolism , Liposomes , Mutagenesis, Site-Directed , Phosphatidylcholines/chemistry , Phosphatidylcholines/metabolism , Phosphatidylinositol 4,5-Diphosphate/chemistry , Phosphatidylinositol 4,5-Diphosphate/metabolism , Protein Conformation , Spectrometry, Fluorescence , Swine
10.
J Neurosci ; 30(40): 13441-53, 2010 Oct 06.
Article in English | MEDLINE | ID: mdl-20926670

ABSTRACT

Rab GTPases are molecular switches that orchestrate protein complexes before membrane fusion reactions. In synapses, Rab3 and Rab5 proteins have been implicated in the exo-endocytic cycling of synaptic vesicles (SVs), but an involvement of additional Rabs cannot be excluded. Here, combining high-resolution mass spectrometry and chemical labeling (iTRAQ) together with quantitative immunoblotting and fluorescence microscopy, we have determined the exocytotic (Rab3a, Rab3b, Rab3c, and Rab27b) and endocytic (Rab4b, Rab5a/b, Rab10, Rab11b, and Rab14) Rab machinery of SVs. Analysis of two closely related proteins, Rab3a and Rab27b, revealed colocalization in synaptic nerve terminals, where they reside on distinct but overlapping SV pools. Moreover, whereas Rab3a readily dissociates from SVs during Ca(2+)-triggered exocytosis, and is susceptible to membrane extraction by Rab-GDI, Rab27b persists on SV membranes upon stimulation and is resistant to GDI-coupled Rab retrieval. Finally, we demonstrate that selective modulation of the GTP/GDP switch mechanism of Rab27b impairs SV recycling, suggesting that Rab27b, probably in concert with Rab3s, is involved in SV exocytosis.


Subject(s)
Calcium/physiology , Exocytosis/physiology , Genes, Overlapping , Presynaptic Terminals/metabolism , Synaptic Vesicles/physiology , rab GTP-Binding Proteins/physiology , rab3A GTP-Binding Protein/physiology , Animals , Calcium Signaling/genetics , Calcium Signaling/physiology , Cells, Cultured , Exocytosis/genetics , Guanosine Diphosphate/genetics , Guanosine Diphosphate/physiology , Guanosine Triphosphate/genetics , Guanosine Triphosphate/physiology , Hippocampus/metabolism , Proteome/genetics , Proteome/physiology , Rats , Subcellular Fractions/metabolism , Synaptic Vesicles/genetics , rab GTP-Binding Proteins/genetics , rab3A GTP-Binding Protein/genetics
11.
Nat Cell Biol ; 4(12): 929-36, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12447393

ABSTRACT

ARF6-regulated endocytosis of E-cadherin is essential during the disassembly of adherens junctions in epithelial cells. Here, we show that activation of ARF6 promotes clathrin-dependent internalization of E-cadherin and caveolae at the basolateral cell surface. Furthermore, we demonstrate that ARF6-GTP, a constitutively activate form of ARF6, interacts with and recruits Nm23-H1, a nucleoside diphosphate (NDP) kinase that provides a source of GTP for dynamin-dependent fission of coated vesicles during endocytosis. Finally, we show that ARF6-mediated recruitment of Nm-23-H1 to cell junctions is accompanied by a decrease in the cellular levels of Rac1-GTP, consistent with previous findings that Nm23-H1 down-regulates activation of Rac1. These studies provide a molecular basis for ARF6 function in polarized epithelia during adherens junction disassembly.


Subject(s)
ADP-Ribosylation Factors/physiology , Adherens Junctions/physiology , Endocytosis/physiology , Epithelial Cells/physiology , Guanosine Triphosphate/physiology , Monomeric GTP-Binding Proteins/physiology , Nucleoside-Diphosphate Kinase , Transcription Factors/physiology , ADP-Ribosylation Factor 6 , Animals , Cell Line , Cell Movement , Cell Polarity , Dogs , Epithelial Cells/cytology , NM23 Nucleoside Diphosphate Kinases
12.
Proc Natl Acad Sci U S A ; 105(14): 5378-83, 2008 Apr 08.
Article in English | MEDLINE | ID: mdl-18388201

ABSTRACT

GTP-dependent microtubule polymerization dynamics are required for cell division and are accompanied by domain rearrangements in the polymerizing subunit, alphabeta-tubulin. Two opposing models describe the role of GTP and its relationship to conformational change in alphabeta-tubulin. The allosteric model posits that unpolymerized alphabeta-tubulin adopts a more polymerization-competent conformation upon GTP binding. The lattice model posits that conformational changes occur only upon recruitment into the growing lattice. Published data support a lattice model, but are largely indirect and so the allosteric model has prevailed. We present two independent solution probes of the conformation of alphabeta-tubulin, the 2.3 A crystal structure of gamma-tubulin bound to GDP, and kinetic simulations to interpret the functional consequences of the structural data. These results (with our previous gamma-tubulin:GTPgammaS structure) support the lattice model by demonstrating that major domain rearrangements do not occur in eukaryotic tubulins in response to GTP binding, and that the unpolymerized conformation of alphabeta-tubulin differs significantly from the polymerized one. Thus, geometric constraints of lateral self-assembly must drive alphabeta-tubulin conformational changes, whereas GTP plays a secondary role to tune the strength of longitudinal contacts within the microtubule lattice. alphabeta-Tubulin behaves like a bent spring, resisting straightening until forced to do so by GTP-mediated interactions with the growing microtubule. Kinetic simulations demonstrate that resistance to straightening opposes microtubule initiation by specifically destabilizing early assembly intermediates that are especially sensitive to the strength of lateral interactions. These data provide new insights into the molecular origins of dynamic microtubule behavior.


Subject(s)
Guanosine Triphosphate/physiology , Microtubules/metabolism , Models, Biological , Tubulin/chemistry , Allosteric Regulation , Computer Simulation , Kinetics , Protein Conformation
13.
mBio ; 12(1)2021 02 02.
Article in English | MEDLINE | ID: mdl-33531402

ABSTRACT

Fatty acid biosynthesis (FASII) enzymes are considered valid targets for antimicrobial drug development against the human pathogen Staphylococcus aureus However, incorporation of host fatty acids confers FASII antibiotic adaptation that compromises prospective treatments. S. aureus adapts to FASII inhibitors by first entering a nonreplicative latency period, followed by outgrowth. Here, we used transcriptional fusions and direct metabolite measurements to investigate the factors that dictate the duration of latency prior to outgrowth. We show that stringent response induction leads to repression of FASII and phospholipid synthesis genes. (p)ppGpp induction inhibits synthesis of malonyl-CoA, a molecule that derepresses FapR, a key regulator of FASII and phospholipid synthesis. Anti-FASII treatment also triggers transient expression of (p)ppGpp-regulated genes during the anti-FASII latency phase, with concomitant repression of FapR regulon expression. These effects are reversed upon outgrowth. GTP depletion, a known consequence of the stringent response, also occurs during FASII latency, and is proposed as the common signal linking these responses. We next showed that anti-FASII treatment shifts malonyl-CoA distribution between its interactants FapR and FabD, toward FapR, increasing expression of the phospholipid synthesis genes plsX and plsC during outgrowth. We conclude that components of the stringent response dictate malonyl-CoA availability in S. aureus FASII regulation, and contribute to latency prior to anti-FASII-adapted outgrowth. A combinatory approach, coupling a (p)ppGpp inducer and an anti-FASII, blocks S. aureus outgrowth, opening perspectives for bi-therapy treatment.IMPORTANCEStaphylococcus aureus is a major human bacterial pathogen for which new inhibitors are urgently needed. Antibiotic development has centered on the fatty acid synthesis (FASII) pathway, which provides the building blocks for bacterial membrane phospholipids. However, S. aureus overcomes FASII inhibition and adapts to anti-FASII by using exogenous fatty acids that are abundant in host environments. This adaptation mechanism comprises a transient latency period followed by bacterial outgrowth. Here, we use metabolite sensors and promoter reporters to show that responses to stringent conditions and to FASII inhibition intersect, in that both involve GTP and malonyl-CoA. These two signaling molecules contribute to modulating the duration of latency prior to S. aureus adaptation outgrowth. We exploit these novel findings to propose a bi-therapy treatment against staphylococcal infections.


Subject(s)
Anti-Bacterial Agents/pharmacology , Fatty Acids/antagonists & inhibitors , Guanosine Pentaphosphate/physiology , Guanosine Triphosphate/physiology , Malonyl Coenzyme A/physiology , Staphylococcus aureus/drug effects , Adaptation, Physiological/drug effects , Fatty Acids/biosynthesis , Humans , Malonyl Coenzyme A/analysis , Mupirocin/pharmacology , Phospholipids/biosynthesis , Staphylococcal Infections/drug therapy , Staphylococcus aureus/physiology
14.
J Cell Biol ; 168(2): 177-8, 2005 Jan 17.
Article in English | MEDLINE | ID: mdl-15657389

ABSTRACT

Proteins are directed to cellular compartments by specific localization signals. A GTP-driven cycle has now been identified as a mechanism for protein targeting to the nucleolus. The involvement of a GTP switch suggests that nucleolar localization can be regulated and may be responsive to extracellular stimuli via signaling pathways. The uncovered mechanism also implies that localization is determined by increased retention rather than directed targeting.


Subject(s)
Carrier Proteins/metabolism , Cell Nucleolus/metabolism , Guanosine Triphosphate/physiology , Nuclear Proteins/metabolism , Protein Transport/physiology , Cell Nucleus/chemistry , Cell Nucleus/metabolism , Cell Nucleus/physiology , Cell Proliferation , GTP-Binding Proteins , Guanosine Triphosphate/metabolism , Humans , Intranuclear Space/metabolism , Models, Biological , Protein Binding , Signal Transduction/physiology
15.
J Cell Biol ; 168(2): 179-84, 2005 Jan 17.
Article in English | MEDLINE | ID: mdl-15657390

ABSTRACT

Nucleostemin (NS) was identified as a stem cell- and cancer cell-enriched nucleolar protein that controls the proliferation of these cells. Here, we report the mechanism that regulates its dynamic shuttling between the nucleolus and nucleoplasm. The nucleolar residence of nucleostemin involves a transient and a long-term binding by the basic and GTP-binding domains, and a dissociation mechanism mediated by the COOH-terminal region. This cycle is propelled by the GTP binding state of nucleostemin. We propose that a rapid nucleostemin cycle is designed to translate extra- and intra-cellular signals into the amount of nucleostemin in the nucleolus in a bidirectional and fast manner.


Subject(s)
Carrier Proteins/metabolism , Cell Nucleus/physiology , Guanosine Triphosphate/physiology , Nuclear Proteins/metabolism , Protein Transport/physiology , Amino Acid Sequence , Animals , CHO Cells , Carrier Proteins/chemistry , Carrier Proteins/genetics , Cell Line, Tumor , Cell Nucleolus/drug effects , Cell Nucleolus/metabolism , Cell Nucleus/drug effects , Cell Nucleus/metabolism , Cricetinae , Cricetulus , Dactinomycin/pharmacology , Fluorescence Recovery After Photobleaching , GTP-Binding Proteins , Green Fluorescent Proteins/genetics , Guanosine Triphosphate/metabolism , Humans , Intranuclear Space/metabolism , Kinetics , Microscopy, Confocal , Models, Biological , Molecular Sequence Data , Mutation , Mycophenolic Acid/pharmacology , Nuclear Proteins/chemistry , Nuclear Proteins/genetics , Nucleophosmin , Protein Binding , Protein Transport/drug effects
16.
Shock ; 53(4): 468-475, 2020 04.
Article in English | MEDLINE | ID: mdl-31090681

ABSTRACT

INTRODUCTION: Rats subjected to polytrauma and hemorrhage develop a coagulopathy that is similar to acute coagulopathy of trauma in humans, and is associated with a rise in prothrombin time and a fall in clot strength. Because platelet aggregation accounts for a major proportion of clot strength, we set out to characterize the effects of polytrauma on platelet function. METHODS: Sprague-Dawley rats were anesthetized with isoflurane. Polytrauma included laparotomy and damage to 10 cm of the small intestines, right and medial liver lobes, right leg skeletal muscle, femur fracture, and hemorrhage (40% of blood volume). No resuscitation was given. Blood samples were taken before and after trauma for the measurement of impedance electrode aggregometry, and intracellular levels of cyclic adenosine and guanosine monophosphate (cAMP, cGMP), inositol trisphosphate (IP3), and adenosine and guanosine triphosphates (ATP, GTP). RESULTS: Polytrauma significantly increased the response of collagen (24%) and thrombin (12%) to stimulate platelet aggregation. However, aggregation to adenosine diphosphate (ADP) or arachidonic acid (AA) was significantly decreased at 2 (52% and 46%, respectively) and 4 h (45% and 39%). Polytrauma and hemorrhage also led to a significant early rise in cAMP (101 ±â€Š11 to 202 ±â€Š29 pg/mL per 1,000 platelets), mirrored by a decrease in cGMP (7.8 ±â€Š0.9 to 0.6 ±â€Š0.5). In addition, there was a late fall in ATP (8.1 ±â€Š0.7 to 2.2 ±â€Š0.6 ng/mL per 1,000 platelets) and GTP (1.5 ±â€Š0.2 to 0.3 ±â€Š0.1). IP3 rose initially, and then fell back to baseline. CONCLUSIONS: Polytrauma and hemorrhage led to a deficit in the platelet aggregation response to ADP and AA after trauma, likely due to the early rise in cAMP, and a later fall in energy substrates, and may explain the decrease in clot strength and impaired hemostasis observed after severe trauma.


Subject(s)
Adenosine Triphosphate/physiology , Blood Coagulation Disorders/etiology , Guanosine Triphosphate/physiology , Hemorrhage/complications , Multiple Trauma/complications , Platelet Aggregation/physiology , Animals , Disease Models, Animal , Hemorrhage/blood , Male , Multiple Trauma/blood , Rats , Rats, Sprague-Dawley
17.
Biochemistry ; 48(22): 4858-70, 2009 Jun 09.
Article in English | MEDLINE | ID: mdl-19388626

ABSTRACT

The molecular basis of microtubule lattice instability derives from the hydrolysis of GTP to GDP in the lattice-bound state of alphabeta-tubulin. While this has been appreciated for many years, there is ongoing debate over the molecular basis of this instability and the possible role of altered nucleotide occupancy in the induction of a conformational change in tubulin. The debate has organized around seemingly contradictory models. The allosteric model invokes nucleotide-dependent states of curvature in the free tubulin dimer, such that hydrolysis leads to pronounced bending and thus disruption of the lattice. The more recent lattice model describes a predominant role for the lattice in straightening free dimers that are curved regardless of their nucleotide state. In this model, lattice-bound GTP-tubulin provides the necessary force to straighten an incoming dimer. Interestingly, there is evidence for both models. The enduring nature of this debate stems from a lack of high-resolution data on the free dimer. In this study, we have prepared alphabeta-tubulin samples at high dilution and characterized the nature of nucleotide-induced conformational stability using bottom-up hydrogen/deuterium exchange mass spectrometry (H/DX-MS) coupled with isothermal urea denaturation experiments. These experiments were accompanied by molecular dynamics simulations of the free dimer. We demonstrate an intermediate state unique to GDP-tubulin, suggestive of the curved colchicine-stabilized structure at the intradimer interface but show that intradimer flexibility is an important property of the free dimer regardless of nucleotide occupancy. Our results indicate that the assembly properties of the free dimer may be better described on the basis of this flexibility. A blended model of assembly emerges in which free-dimer allosteric effects retain importance, in an assembly process dominated by lattice-induced effects.


Subject(s)
Microtubules/chemistry , Microtubules/metabolism , Models, Molecular , Protein Multimerization , Tubulin/chemistry , Tubulin/metabolism , Amino Acid Sequence , Animals , Cattle , Computer Simulation , Guanosine Diphosphate/physiology , Guanosine Triphosphate/physiology , Microtubules/physiology , Molecular Sequence Data , Peptide Mapping , Protein Conformation , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tandem Mass Spectrometry , Thermodynamics , Tubulin/physiology
18.
Biochemistry ; 48(31): 7519-24, 2009 Aug 11.
Article in English | MEDLINE | ID: mdl-19527054

ABSTRACT

Soluble guanylate cyclase (sGC) serves as a receptor for the signaling agent nitric oxide (NO). sGC synthesis of cGMP is regulated by NO, GTP, ATP, and allosteric activators such as YC-1. The guanylate cyclase activity and adenylate cyclase activity of full-length sGC and the sGC catalytic domain constructs (alpha1(cat)beta1(cat)) are reported here. ATP is a mixed-type inhibitor of cGMP production for both sGC and alpha1(cat)beta1(cat), indicating that the C-terminus of sGC contains an allosteric nucleotide binding site. YC-1 did not activate alpha1(cat)beta1(cat) or compete with ATP inhibition of cGMP synthesis, which suggests that YC-1 and ATP bind to distinct sites. alpha1(cat)beta1(cat) and NO-stimulated sGC also synthesize cAMP, but this activity is inhibited by ATP via noncompetitive substrate inhibition and by GTP via mixed-type inhibition. Additionally, the adenylate cyclase activity of purified sGC was inhibited by PC12 lysate, suggesting that an intracellular small molecule or protein regulates this activity in vivo.


Subject(s)
Adenosine Triphosphate/chemistry , Guanosine Triphosphate/chemistry , Guanylate Cyclase/metabolism , Protein Subunits/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Adenosine Triphosphate/antagonists & inhibitors , Adenosine Triphosphate/physiology , Adenylyl Cyclases/metabolism , Allosteric Regulation/physiology , Allosteric Site/physiology , Animals , Catalytic Domain , Guanosine Triphosphate/metabolism , Guanosine Triphosphate/physiology , Guanylate Cyclase/antagonists & inhibitors , Guanylate Cyclase/chemistry , PC12 Cells , Protein Conformation , Protein Subunits/antagonists & inhibitors , Protein Subunits/chemistry , Rats , Receptors, Cytoplasmic and Nuclear/antagonists & inhibitors , Receptors, Cytoplasmic and Nuclear/chemistry , Soluble Guanylyl Cyclase , Substrate Specificity
19.
J Cell Biol ; 107(4): 1437-48, 1988 Oct.
Article in English | MEDLINE | ID: mdl-3170635

ABSTRACT

We have developed video microscopy methods to visualize the assembly and disassembly of individual microtubules at 33-ms intervals. Porcine brain tubulin, free of microtubule-associated proteins, was assembled onto axoneme fragments at 37 degrees C, and the dynamic behavior of the plus and minus ends of microtubules was analyzed for tubulin concentrations between 7 and 15.5 microM. Elongation and rapid shortening were distinctly different phases. At each end, the elongation phase was characterized by a second order association and a substantial first order dissociation reaction. Association rate constants were 8.9 and 4.3 microM-1 s-1 for the plus and minus ends, respectively; and the corresponding dissociation rate constants were 44 and 23 s-1. For both ends, the rate of tubulin dissociation equaled the rate of tubulin association at 5 microM. The rate of rapid shortening was similar at the two ends (plus = 733 s-1; minus = 915 s-1), and did not vary with tubulin concentration. Transitions between phases were abrupt and stochastic. As the tubulin concentration was increased, catastrophe frequency decreased at both ends, and rescue frequency increased dramatically at the minus end. This resulted in fewer rapid shortening phases at higher tubulin concentrations for both ends and shorter rapid shortening phases at the minus end. At each concentration, the frequency of catastrophe was slightly greater at the plus end, and the frequency of rescue was greater at the minus end. Our data demonstrate that microtubules assembled from pure tubulin undergo dynamic instability over a twofold range of tubulin concentrations, and that the dynamic instability of the plus and minus ends of microtubules can be significantly different. Our analysis indicates that this difference could produce treadmilling, and establishes general limits on the effectiveness of length redistribution as a measure of dynamic instability. Our results are consistent with the existence of a GTP cap during elongation, but are not consistent with existing GTP cap models.


Subject(s)
Microtubules/physiology , Tubulin/physiology , Animals , Guanosine Triphosphate/physiology , In Vitro Techniques , Kinetics , Microtubules/ultrastructure , Protein Binding , Swine , Video Recording
20.
J Cell Biol ; 102(1): 70-6, 1986 Jan.
Article in English | MEDLINE | ID: mdl-3001104

ABSTRACT

To investigate the roles of inositol 1,4,5-trisphosphate (InsP3) and guanyl nucleotide binding proteins (G-proteins) in the transduction mechanism coupling fertilization and exocytosis of cortical vesicles in sea urchin eggs, we microinjected InsP3 and guanyl nucleotide analogs into eggs of Lytechinus variegatus. Injection of 28 nM InsP3 caused exocytosis. However, if the egg was first injected with EGTA ([Cai] less than or equal to 0.1 microM; EGTA = 1.6 mM), InsP3 injection did not cause exocytosis, supporting the hypothesis that InsP3 acts by causing a rise in intracellular free calcium. Injection of 28 microM guanosine-5'-0-(3-thiotriphosphate) (GTP-gamma-S), a hydrolysis-resistant analog of GTP, caused exocytosis, but exocytosis did not occur if the egg was pre-injected with EGTA. Injection of 3 mM guanosine-5'-0-(2-thiodiphosphate) (GDP-beta-S), a metabolically stable analog of GDP, prevented sperm from stimulating exocytosis. However, injection of GDP-beta-S did not prevent the stimulation of exocytosis by InsP3. These results suggested the following sequence of events. The sperm activates a G-protein, which stimulates production of InsP3. InsP3 elevates intracellular free calcium, which causes exocytosis.


Subject(s)
Exocytosis , Fertilization , GTP-Binding Proteins/physiology , Inositol Phosphates/physiology , Ovum/physiology , Sea Urchins/physiology , Sugar Phosphates/physiology , Animals , Calcium/physiology , Cytoplasmic Granules/physiology , Female , Guanosine Triphosphate/analogs & derivatives , Guanosine Triphosphate/physiology , Male , Microinjections , Receptors, Cell Surface/physiology , Spermatozoa/physiology
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