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1.
Proc Natl Acad Sci U S A ; 118(42)2021 10 19.
Article in English | MEDLINE | ID: mdl-34663701

ABSTRACT

Atypical chemokine receptor 1 (ACKR1) is a G protein-coupled receptor (GPCR) targeted by Staphylococcus aureus bicomponent pore-forming leukotoxins to promote bacterial growth and immune evasion. Here, we have developed an integrative molecular pharmacology and structural biology approach in order to characterize the effect of leukotoxins HlgA and HlgB on ACKR1 structure and function. Interestingly, using cell-based assays and native mass spectrometry, we found that both components HlgA and HlgB compete with endogenous chemokines through a direct binding with the extracellular domain of ACKR1. Unexpectedly, hydrogen/deuterium exchange mass spectrometry analysis revealed that toxin binding allosterically modulates the intracellular G protein-binding domain of the receptor, resulting in dissociation and/or changes in the architecture of ACKR1-Gαi1 protein complexes observed in living cells. Altogether, our study brings important molecular insights into the initial steps of leukotoxins targeting a host GPCR.


Subject(s)
Receptors, G-Protein-Coupled/metabolism , Staphylococcus aureus/physiology , Animals , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Dimerization , Duffy Blood-Group System/isolation & purification , Duffy Blood-Group System/metabolism , Exotoxins/metabolism , Humans , Mass Spectrometry/methods , Protein Binding , Receptors, Cell Surface/isolation & purification , Receptors, Cell Surface/metabolism , Sf9 Cells
2.
Anal Biochem ; 542: 16-19, 2018 02 01.
Article in English | MEDLINE | ID: mdl-29169777

ABSTRACT

Deleted in Malignant Brain Tumor 1 (DMBT1, alias SAG or gp340) is a pattern recognition receptor involved in immune defense, cell polarization, differentiation and regeneration. To investigate the role of the protein in physiological and pathological processes, the protein has often been isolated from saliva or produced in vitro and purified by a multistep affinity purification procedure using bacteria, followed by FPLC. Here, we compared a simple, one-step FPLC-SEC protocol for purification of recombinant DMBT1 6 kb, with that of the standard bacteria affinity purification-based protocol. Our data suggest that our FPLC-SEC protocol yields DMBT1 in a more native conformation.


Subject(s)
Receptors, Cell Surface/isolation & purification , Receptors, Cell Surface/metabolism , Calcium-Binding Proteins , Cell Line, Tumor , Chromatography, Gel , Chromatography, Liquid , DNA-Binding Proteins , Humans , Receptors, Cell Surface/chemistry , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Streptococcus mutans/chemistry , Streptococcus mutans/metabolism , Tumor Suppressor Proteins
3.
Malar J ; 17(1): 76, 2018 Feb 08.
Article in English | MEDLINE | ID: mdl-29422046

ABSTRACT

BACKGROUND: The Plasmodium vivax Duffy binding protein (PvDBP) has been the most studied ligand binding human reticulocytes to date. This molecule has a cysteine-rich domain in region II (RII) which has been used as control for evaluating the target cell binding activity of several parasite molecules. However, obtaining rPvDBP-RII in a soluble form using the Escherichia coli expression system usually requires laborious and time-consuming steps for recovering the molecule's structure and function, considering it is extracted from inclusion bodies. The present study describes an easy and fast method for expressing and obtaining several PvDBP fragments which should prove ideal for use in protein-cell interaction assays. RESULTS: Two PvDBP encoding regions (rii and riii/v) were cloned in pEXP5-CT vector and expressed in E. coli and extracted from the soluble fraction (rPvDBP-RIIS and rPvDBP-RIII/VS) using a simple freezing/thawing protocol. After the purification, dichroism analysis enabled verifying high rPvDBP-RIIS and rPvDBP-RIII/VS secondary structure α-helix content, which was lowered when molecules were extracted from inclusion bodies (rPvDBP-RIIIB and rPvDBP-RIII/VIB) using a denaturing step. Interestingly, rPvDBP-RIIS, but not rPvDBP-RIIIB, bound to human reticulocytes, while rPvDBP-RIII/VS and rPvDBP-RIII/VIB bound to such cells in a similar way to negative control (cells incubated without recombinant proteins). CONCLUSIONS: This research has shown for the first time how rPvDBP-RII can be expressed and obtained in soluble form using the E. coli system and avoiding the denaturation and refolding steps commonly used. The results highlight the usefulness of the rPvDBP-RIII/VS fragment as a non-binding control for protein-cell target interaction assays. The soluble extraction protocol described is a good alternative to obtain fully functional P. vivax proteins in a fast and easy way, which will surely prove useful to laboratories working in studying this parasite's biology.


Subject(s)
Antigens, Protozoan/genetics , Antigens, Protozoan/isolation & purification , Gene Expression Profiling/methods , Parasitology/methods , Plasmodium vivax/genetics , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Receptors, Cell Surface/genetics , Receptors, Cell Surface/isolation & purification , Reticulocytes/metabolism
4.
Biochem Biophys Res Commun ; 489(2): 270-274, 2017 07 22.
Article in English | MEDLINE | ID: mdl-28571742

ABSTRACT

Serine/threonine-protein kinase-like protein ARABIDOPSIS CRINKLY4 (ACR4), a transmembrane protein of Arabidopsis thaliana, plays important roles in cell division and differentiation. Although accumulating studies shed light on the function of ACR4, the structure and catalytic mechanism of ACR4 remain to be elucidated. Here, we report the purification and enzymatic properties of the intracellular kinase domain (residues 464-799) of ACR4 (ACR4IKD). Through Ni-affinity chromatography and gel filter chromatography methods, we successfully obtain high-purity ACR4IKD protein from Escherichia coli. Dynamic light scattering and gel-filtration methods reveal that ACR4IKD distributes with high homogeneity and exists as a monomer in solution. In addition, the ACR4IKD protein has typical kinase activity with myelin basic protein (MBP) as the substrate. Our study may lay the foundation for structure determination of ACR4IKD and further functional research, for example, screening significant substrates of ACR4 in Arabidopsis thaliana.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Protein Serine-Threonine Kinases/metabolism , Receptors, Cell Surface/metabolism , Amino Acid Sequence , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/isolation & purification , Enzyme Activation , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/isolation & purification , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/isolation & purification
5.
Histochem Cell Biol ; 147(5): 565-574, 2017 May.
Article in English | MEDLINE | ID: mdl-28012129

ABSTRACT

During pregnancy, the fetal-maternal interface establishes immune tolerance between the fetus and the mother. CD24, a mucin-like glycoprotein expressed at the surface of hematopoietic cells and diverse tumor cells, is known to interact with the sialic acid-binding immunoglobulin-type lectins (Siglecs). This interaction was assessed as a candidate complex for the immune suppression response in the placenta. CD24 was affinity purified from term placenta and characterized by SDS-PAGE, Western blot and ELISA. Binding of recombinant Siglecs to placental CD24 was evaluated by ELISA. The expression of CD24 and Siglec-10 in first trimester placental tissues was investigated by immunohistochemistry and immunofluorescence. Placental CD24 had an apparent molecular weight of 30-70 kDa consistent with its high degree of N- and O-linked glycosylation. EDTA-sensitive CD24-Siglec-10 interaction via the terminal sialic acid glycan residues of CD24 was observed. CD24 did not interact with Siglec-3 or Siglec-5. During the first trimester, and already in gestational week (GA) 8, CD24 showed high expression in villous and extravillous cytotrophoblasts. There was also a mild expression in stromal cells, while syncytiotrophoblasts were negative. Co-localization of CD24 with Siglec-10 was observed in endometrial glands and in first trimester decidual cells in close vicinity to extracellular trophoblasts. This study is the first to demonstrate the early presence of CD24 in the placenta cytotrophoblast layers, placental bed and maternal uterine glands. The presence of the CD24-Siglec-10 in these regions of fetal-maternal interactions suggests a possible role in mediating immune tolerance at the fetal-maternal interface.


Subject(s)
CD24 Antigen/biosynthesis , Immune Tolerance/immunology , Lectins/biosynthesis , Maternal-Fetal Exchange/immunology , Placenta/immunology , Pregnancy Trimester, First/immunology , Receptors, Cell Surface/biosynthesis , CD24 Antigen/immunology , CD24 Antigen/isolation & purification , Cell Line , Enzyme-Linked Immunosorbent Assay , Female , Humans , Lectins/immunology , Lectins/isolation & purification , Placenta/metabolism , Pregnancy , Pregnancy Trimester, First/metabolism , Receptors, Cell Surface/immunology , Receptors, Cell Surface/isolation & purification
6.
Protein Expr Purif ; 136: 52-57, 2017 Aug.
Article in English | MEDLINE | ID: mdl-26578115

ABSTRACT

Plasmodium vivax is dependent on interaction with the Duffy antigen receptor for chemokines (DARC) for invasion of human erythrocytes. The P. vivax Duffy binding protein (PvDBP) mediates interaction of P. vivax merozoites with DARC. The DARC receptor-binding domain lies in a conserved N-terminal cysteine-rich region of PvDBP referred to as region II (PvDBPII). PvDBPII is an attractive vaccine candidate since antibodies raised against PvDBPII block erythrocyte invasion by P. vivax. Here, we describe methods to produce recombinant PvDBPII in its correctly folded conformation. A synthetic gene optimized for expression of PvDBPII in Escherichia coli and fed batch fermentation process based on exponential feeding strategy was used to achieve high levels of expression of recombinant PvDBPII. Recombinant PvDBPII was isolated from inclusion bodies, refolded by rapid dilution and purified by ion exchange chromatography. Purified recombinant PvDBPII was characterized for identity, purity and functional activity using standardized release assays. Recombinant PvDBPII formulated with various human compatible adjuvants including glycosylpyranosyl lipid A-stable emulsion (GLA-SE) and alhydrogel was used for immunogenicity studies in small animals to downselect a suitable formulation for clinical development. Sera collected from immunized animals were tested for recognition of PvDBPII and inhibition of PvDBPII-DARC binding. GLA-SE formulations of PvDBPII yielded higher ELISA and binding inhibition titres compared to PvDBPII formulated with alhydrogel. These data support further development of a recombinant vaccine for P. vivax based on PvDBPII formulated with GLA-SE.


Subject(s)
Antigens, Protozoan , Immunogenicity, Vaccine , Malaria Vaccines , Plasmodium vivax/genetics , Protozoan Proteins , Receptors, Cell Surface , Animals , Antigens, Protozoan/biosynthesis , Antigens, Protozoan/genetics , Antigens, Protozoan/immunology , Antigens, Protozoan/isolation & purification , Humans , Malaria Vaccines/biosynthesis , Malaria Vaccines/genetics , Malaria Vaccines/immunology , Malaria Vaccines/isolation & purification , Mice , Mice, Inbred BALB C , Plasmodium vivax/immunology , Protein Domains , Protozoan Proteins/biosynthesis , Protozoan Proteins/genetics , Protozoan Proteins/immunology , Protozoan Proteins/isolation & purification , Receptors, Cell Surface/biosynthesis , Receptors, Cell Surface/genetics , Receptors, Cell Surface/immunology , Receptors, Cell Surface/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/immunology , Recombinant Proteins/isolation & purification
7.
Korean J Parasitol ; 55(3): 255-265, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28719950

ABSTRACT

Malaria is an infectious disease affecting humans, which is transmitted by the bite of Anopheles mosquitoes harboring sporozoites of parasitic protozoans belonging to the genus Plasmodium. Despite past achievements to control the protozoan disease, malaria still remains a significant health threat up to now. In this study, we cloned and characterized the full-unit Plasmodium yoelii genes encoding merozoite surface protein 1 (MSP1), circumsporozoite protein (CSP), and Duffy-binding protein (DBP), each of which can be applied for investigations to obtain potent protective vaccines in the rodent malaria model, due to their specific expression patterns during the parasite life cycle. Recombinant fragments corresponding to the middle and C-terminal regions of PyMSP1 and PyCSP, respectively, displayed strong reactivity against P. yoelii-infected mice sera. Specific native antigens invoking strong humoral immune response during the primary and secondary infections of P. yoelii were also abundantly detected in experimental ICR mice. The low or negligible parasitemia observed in the secondary infected mice was likely to result from the neutralizing action of the protective antibodies. Identification of these antigenic proteins might provide the necessary information and means to characterize additional vaccine candidate antigens, selected solely on their ability to produce the protective antibodies.


Subject(s)
Genes, Protozoan/genetics , Malaria Vaccines , Malaria , Merozoite Surface Protein 1 , Plasmodium yoelii/genetics , Plasmodium yoelii/immunology , Protozoan Proteins , Animals , Antigens, Protozoan/isolation & purification , Disease Models, Animal , Humans , Immunity, Humoral/immunology , Life Cycle Stages , Malaria/immunology , Malaria/parasitology , Malaria/prevention & control , Malaria Vaccines/immunology , Merozoite Surface Protein 1/isolation & purification , Mice, Inbred ICR , Plasmodium yoelii/growth & development , Protozoan Proteins/isolation & purification , Receptors, Cell Surface/isolation & purification
8.
Proteomics ; 15(7): 1332-7, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25504917

ABSTRACT

Human cardiac stem cells (hCSC) express a portfolio of plasma membrane receptors that are involved in the regulatory auto/paracrine feedback loop mechanism of activation of these cells, and consequently contribute to myocardial regeneration. In order to attain a comprehensive description of hCSC receptome and overcoming the inability demonstrated by other technologies applied in receptor identification, mainly due to the transmembrane nature, high hydrophobic character and relative low concentration of these proteins, we have exploited and improved a proteomics workflow. This approach was based on the enrichment of hCSC plasma membrane fraction and addition of prefractionation steps prior to MS analysis. More than 100 plasma membrane receptors were identified. The data reported herein constitute a valuable source of information to further understand cardiac stem cells activation mechanisms and the subsequent cardiac repair process. All MS data have been deposited in the ProteomeXchange with identifier PXD001117 (http://proteomecentral.proteomexchange.org/dataset/PXD001117).


Subject(s)
Adult Stem Cells/chemistry , Proteome/chemistry , Receptors, Cell Surface/chemistry , Adult Stem Cells/metabolism , Cells, Cultured , Chromatography, Ion Exchange , Humans , Myocardial Infarction/metabolism , Myocardial Infarction/pathology , Myocardium/pathology , Proteome/isolation & purification , Proteome/metabolism , Proteomics , Receptors, Cell Surface/isolation & purification , Receptors, Cell Surface/metabolism , Regeneration , Tandem Mass Spectrometry
9.
Oncology ; 89 Suppl 1: 7-15, 2015.
Article in English | MEDLINE | ID: mdl-26550829

ABSTRACT

Adult T-cell leukemia/lymphoma (ATLL) is a peripheral T-cell neoplasm of highly pleomorphic lymphoid cells. ATLL is usually widely disseminated, and it is caused by human T-cell leukemia virus type 1 (HTLV-1). It is a disease with a long latency, and affected individuals are usually exposed to the virus very early in life. The cumulative incidence of ATLL is estimated to be 2.5% among HTLV-1 carriers. ATLL cells express CD2, CD3, CD5, CD4, and CD25, as well as CCR4 and FoxP3 of the regulatory T-cell marker. HTLV-1 is causally linked to ATLL, but infection alone is not sufficient to result in neoplastic transformation. A significant finding in this connection is that the Tax viral protein leads to transcriptional activation of many genes, while the HTLV-1 basic leucine zipper factor is thought to be important for T-cell proliferation and oncogenesis. Half of ATLL cases retain the ability to express HTLV-1 Tax, which is a target of HTLV-1-specific cytotoxic T lymphocytes (CTL). An increase in HTLV-1-specific CTL responses is observed in some asymptomatic HTLV-1 carriers. Although HTLV-1-specific CTL are also present in the peripheral blood of ATLL patients, they do not expand sufficiently. We investigated the clinicopathological features and analyzed the staining of Tax-specific CTL and FoxP3. Tax-specific CTL correlated inversely with FoxP3, an increase in the ratio of CD163+ tumor-associated macrophages was associated with worse clinical prognosis, and ATLL cell lines proliferated significantly following direct co-culture with M2 macrophages. Several clinical variants of ATLL have been identified: acute, lymphomatous, chronic, and smoldering. Oligo-array comparative genomic hybridization revealed that genomic loss of 9p21.3 was a significant characteristic of acute-type, but not of chronic-type ATLL. Furthermore, we found that genomic alteration of CD58, which is implicated in immune escape, is more frequently observed in acute than in chronic ATLL. Interestingly, the chronic cases with cell cycle deregulation and disruption of immunosurveillance mechanism were associated with faster progression to acute ATLL. Immune evasion, microenvironment, and genetic alteration are therefore important in the multi-step progression of ATLL lymphomagenesis.


Subject(s)
Basic-Leucine Zipper Transcription Factors/metabolism , Forkhead Transcription Factors/metabolism , Gene Products, tax/metabolism , Leukemia-Lymphoma, Adult T-Cell/metabolism , Leukemia-Lymphoma, Adult T-Cell/pathology , Receptors, CCR4/metabolism , T-Lymphocytes, Cytotoxic/immunology , Adult , Antigens, CD/isolation & purification , Antigens, Differentiation, Myelomonocytic/isolation & purification , Basic-Leucine Zipper Transcription Factors/genetics , Cell Proliferation , Chromosomes, Human, Pair 9 , Disease Progression , HTLV-I Infections/complications , Humans , Immunologic Surveillance , Incidence , Leukemia-Lymphoma, Adult T-Cell/epidemiology , Leukemia-Lymphoma, Adult T-Cell/genetics , Leukemia-Lymphoma, Adult T-Cell/immunology , Leukemia-Lymphoma, Adult T-Cell/virology , Lymphoma, T-Cell, Peripheral/metabolism , Lymphoma, T-Cell, Peripheral/pathology , Macrophages , Phenotype , Prognosis , Receptors, Cell Surface/isolation & purification , Risk Factors , Transcriptional Activation , Tumor Escape , Tumor Microenvironment/immunology
10.
Protein Expr Purif ; 109: 40-6, 2015 May.
Article in English | MEDLINE | ID: mdl-25680770

ABSTRACT

Streptomyces coelicolor is a soil-dwelling bacterium that undergoes an intricate, saprophytic lifecycle. The bacterium takes up exogenous nucleosides for nucleic acid synthesis or use as carbon and energy sources. However, nucleosides must pass through the membrane with the help of transporters. In the present work, the SCO4884 and SCO4885 genes were cloned into pCOLADuet-1 and overexpressed in Escherichia coli BL21. Each protein was monomeric. Using isothermal titration calorimetry, we determined that SCO4884 and SCO4885 are likely nucleoside receptors with affinity for adenosine and pyrimidine nucleosides. On the basis of bioinformatics analysis and the transporter classification system, we speculate that SCO4884-SCO4888 is an ABC-like transporter responsible for the uptake of adenosine and pyrimidine nucleosides.


Subject(s)
Bacterial Proteins/genetics , Gene Expression , Genes, Bacterial , Nucleosides/metabolism , Receptors, Cell Surface/genetics , Recombinant Proteins/metabolism , Streptomyces coelicolor/genetics , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Mass Spectrometry , Molecular Sequence Data , Molecular Weight , Plasmids/metabolism , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/isolation & purification , Receptors, Cell Surface/metabolism , Sequence Alignment
11.
PLoS Pathog ; 8(2): e1002539, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22383874

ABSTRACT

Lysozymes and hexosaminidases are ubiquitous hydrolases in bacteria and eukaryotes. In phagocytic lower eukaryotes and professional phagocytes from higher eukaryotes, they are involved in the degradation of ingested bacteria in phagosomes. In Entamoeba histolytica, which is the intestinal protozoan parasite that causes amoebiasis, phagocytosis plays a pivotal role in the nutrient acquisition and the evasion from the host defense systems. While the content of phagosomes and biochemical and physiological roles of the major phagosomal proteins have been established in E. histolytica, the mechanisms of trafficking of these phagosomal proteins, in general, remain largely unknown. In this study, we identified and characterized for the first time the putative receptor/carrier involved in the transport of the above-mentioned hydrolases to phagosomes. We have shown that the receptor, designated as cysteine protease binding protein family 8 (CPBF8), is localized in lysosomes and mediates transport of lysozymes and ß-hexosaminidase α-subunit to phagosomes when the amoeba ingests mammalian cells or Gram-positive bacillus Clostridium perfringens. We have also shown that the binding of CPBF8 to the cargos is mediated by the serine-rich domain, more specifically three serine residues of the domain, which likely contains trifluoroacetic acid-sensitive O-phosphodiester-linked glycan modifications, of CPBF8. We further showed that the repression of CPBF8 by gene silencing reduced the lysozyme and ß-hexosaminidase activity in phagosomes and delayed the degradation of C. perfringens. Repression of CPBF8 also resulted in decrease in the cytopathy against the mammalian cells, suggesting that CPBF8 may also be involved in, besides the degradation of ingested bacteria, the pathogenesis against the mammalian hosts. This work represents the first case of the identification of a transport receptor of hydrolytic enzymes responsible for the degradation of microorganisms in phagosomes.


Subject(s)
Entamoeba histolytica/metabolism , Lysosomes/metabolism , Phagosomes/metabolism , Receptors, Cell Surface/physiology , beta-N-Acetylhexosaminidases/metabolism , Amino Acid Sequence , Animals , Biological Transport , CHO Cells , Cricetinae , Cricetulus , Entamoeba histolytica/chemistry , Entamoeba histolytica/genetics , Entamoeba histolytica/physiology , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Membrane Proteins/metabolism , Membrane Proteins/physiology , Molecular Sequence Data , Phagocytosis/physiology , Protein Binding , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Protozoan Proteins/metabolism , Protozoan Proteins/physiology , Receptors, Cell Surface/genetics , Receptors, Cell Surface/isolation & purification , Receptors, Cell Surface/metabolism , Sequence Homology, Amino Acid
12.
FEMS Yeast Res ; 14(8): 1186-95, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25263492

ABSTRACT

Trichosporon asahii is the major causative agent of deep-seated trichosporonosis. The virulence factors of this yeast pathogen remain uncharacterized. To investigate the pathogenicity of T. asahii, we focused on the interactions between surface molecules of the yeast and host biomolecules. We examined the ability of surface molecules to bind human plasminogen using clinical isolates of T. asahii. Living T. asahii cells accelerated the conversion of plasminogen to plasmin in a dose-dependent manner in the presence of tissue plasminogen activator. Extracts from cells using lithium chloride contained plasminogen-binding molecules based on surface plasmon resonance (SPR) analyses. In all strains tested, several of the fractions obtained using DEAE column chromatography bound and accelerated the conversion of plasminogen to plasmin. Based on far-Western blotting analyses, a common protein was identified within the four strains, which was identified as a hypothetical protein from genome analyses of T. asahii. blast searches suggested the protein might be heparinase, and heparinase activity was detected in the T. asahii extract. Furthermore, affinity chromatography using plasminogen as a ligand detected one protein band by SDS-PAGE, which was identified as thioredoxin-dependent peroxide reductase.SPR analyses suggested the presence of molecules on T. asahii cells that could bind plasminogen with differing affinities.


Subject(s)
Plasminogen/metabolism , Receptors, Cell Surface/metabolism , Trichosporon/metabolism , Fibrinolysin/metabolism , Fungal Proteins/genetics , Fungal Proteins/metabolism , Humans , Receptors, Cell Surface/genetics , Receptors, Cell Surface/isolation & purification , Trichosporon/genetics
13.
Protein Expr Purif ; 98: 1-9, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24607362

ABSTRACT

Streptomyces sp. SirexAA-E (ActE) has been identified as a highly cellulolytic actinobacterium capable of deconstructing lignocellulosic biomass. SirexAA-E CAZymes most frequently contain a carbohydrate-binding module from family 2a (CBM2a). The DNA encoding the CBM2a from gene locus SACTE_0237, the most abundantly expressed cellulase from SirexAA-E, was cloned into an Escherichia coli expression vector and expressed as a C-terminal fusion protein to GFP. The GFP-CBM2a fusion protein was purified from insoluble inclusion bodies and refolded. The solubilized protein was separated by size-exclusion chromatography into high molecular weight GFP-CBM2a multimers and monomeric GFP-CBM2a. Only the monomeric CBM2a protein was found to have high relative affinity (partition coefficient of 0.62±0.04L/g) to cellulose. Binding of monomeric CBM2a prepared in this manner exhibits fully reversible, high affinity binding to cellulose.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/isolation & purification , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cellulose/metabolism , Chromatography, Affinity , Escherichia coli/genetics , Gene Expression , Kinetics , Models, Molecular , Protein Binding , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Streptomyces/chemistry , Streptomyces/genetics
14.
Protein Expr Purif ; 104: 92-102, 2014 12.
Article in English | MEDLINE | ID: mdl-25261717

ABSTRACT

Patched (Ptc) is a twelve-pass transmembrane protein that functions as a receptor for the Hedgehog (Hh) family of morphogens. In addition to Ptc, several accessory proteins including the CDO/Ihog family of co-receptors are necessary for proper Hh signaling. Structures of Hh proteins bound to members of the CDO/Ihog family are known, but the nature of the full Hh receptor complex is not well understood. We have expressed the Drosophila Patched and Mouse Patched-1 proteins in Sf9 cells and find that Sonic Hedgehog will bind to Mouse Patched-1 in isolated Sf9 cell membranes but that purified, detergent-solubilized Ptc proteins do not interact strongly with cognate Hh and CDO/Ihog homologs. These results may reflect a nonnative conformation of detergent-solubilized Ptc or that an additional factor or factors lost during purification are required for high-affinity Ptc binding to Hh.


Subject(s)
Detergents/chemistry , Drosophila Proteins/chemistry , Drosophila Proteins/genetics , Hedgehog Proteins/chemistry , Membrane Glycoproteins/chemistry , Patched-1 Receptor/genetics , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/genetics , Animals , Baculoviridae/genetics , Drosophila Proteins/isolation & purification , Mice , Patched-1 Receptor/chemistry , Patched-1 Receptor/isolation & purification , Protein Binding , Protein Conformation , Receptors, Cell Surface/isolation & purification , Sf9 Cells , Solubility
15.
J BUON ; 19(1): 53-9, 2014.
Article in English | MEDLINE | ID: mdl-24659643

ABSTRACT

Human tissue kallikrein (KLK1) and is related peptidases (KLK2-KLK15) are a family of 15 homologous serine proteases, participating in numerous processes of normal physiology. Considering the irreversible impact of proteases on substrates, the tissue-dependent regulation of KLKs activity becomes crucial for their beneficial role in normal homeostasis. Moreover, KLKs expression is strongly regulated at the transcriptional and post-transcriptional level by steroid hormones and miRNAs, respectively. Deregulation of KLKs expression, secretion and/or activation has been observed in most human malignancies and there is a trend to identify their role in the multi-complex process of cancer development. The identification of extracellular matrix (ECM) proteins, cell-surface receptors, cell-surface adhesion molecules and growth factors among substrates, clearly support the driving role of KLK abnormal expression and function during tumorigenesis and cancer progression. KLKs have also clinical utility in cancer diagnosis and monitoring like KLK 3 (PSA) in prostate cancer. In this review, we tried to summarize the existing literature about the role of KLKs in gastrointestinal cancers as well as to emphasize their clinical significance for patients' prognosis.


Subject(s)
Gastrointestinal Neoplasms/genetics , Kallikreins/genetics , Peptide Hydrolases/genetics , Biomarkers, Tumor , Extracellular Matrix Proteins/genetics , Extracellular Matrix Proteins/isolation & purification , Gastrointestinal Neoplasms/pathology , Gastrointestinal Tract/pathology , Humans , Kallikreins/classification , Kallikreins/metabolism , Peptide Hydrolases/metabolism , Prognosis , Receptors, Cell Surface/genetics , Receptors, Cell Surface/isolation & purification
16.
Infect Immun ; 81(6): 1870-9, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23439307

ABSTRACT

Staphylococcus aureus is a major human pathogen that can colonize the nasal cavity, skin, intestine, and oral cavity as a commensal bacterium. gp340, also known as DMBT1 (deleted in malignant brain tumors 1), is associated with epithelial differentiation and innate immunity. In the oral cavity, gp340 induces salivary aggregation with several oral bacteria and promotes bacterial adhesion to tissues such as the teeth and mucosa. S. aureus is often isolated from the oral cavity, but the mechanism underlying its persistence in the oral cavity remains unclear. In this study, we investigated the interaction between S. aureus and gp340 and found that S. aureus interacts with saliva- and gp340-coated resin. We then identified the S. aureus factor(s) responsible for binding to gp340. The cell surface protein SasA, which is rich in basic amino acids (BR domain) at the N terminus, was responsible for binding to gp340. Inactivation of the sasA gene resulted in a significant decrease in S. aureus binding to gp340-coated resin. Also, recombinant SasA protein (rSasA) showed binding affinity to gp340, which was inhibited by the addition of N-acetylneuraminic acid. Surface plasmon resonance analysis showed that rSasA significantly bound to the NeuAcα(2-3)Galß(1-4)GlcNAc structure. These results indicate that SasA is responsible for binding to gp340 via the N-acetylneuraminic acid moiety.


Subject(s)
Bacterial Proteins/metabolism , Phosphotransferases/metabolism , Receptors, Cell Surface/metabolism , Staphylococcus aureus/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Calcium-Binding Proteins , DNA-Binding Proteins , Gene Expression Regulation, Bacterial/physiology , Humans , Male , Membrane Proteins/genetics , Membrane Proteins/metabolism , Middle Aged , Mutation , N-Acetylneuraminic Acid/chemistry , Phosphotransferases/chemistry , Protein Binding , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/isolation & purification , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saliva/chemistry , Staphylococcus aureus/genetics , Staphylococcus aureus/metabolism , Tumor Suppressor Proteins
17.
Glycobiology ; 23(2): 232-40, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23089618

ABSTRACT

Bifidobacterium bifidum is one of the most frequently found bifidobacteria in the intestines of newborn infants. We previously reported that B. bifidum possesses unique metabolic pathways for O-linked glycans on gastrointestinal mucin (Yoshida E, Sakurama H, Kiyohara M, Nakajima M, Kitaoka M, Ashida H, Hirose J, Katayama T, Yamamoto K, Kumagai H. 2012. Bifidobacterium longum subsp. infantis uses two different ß-galactosidases for selectively degrading type-1 and type-2 human milk oligosaccharides. Glycobiology. 22:361-368). The nonreducing termini of O-linked glycans on mucin are frequently covered with histo-blood group antigens. Here, we identified a gene agabb from B. bifidum JCM 1254, which encodes glycoside hydrolase (GH) family 110 α-galactosidase. AgaBb is a 1289-amino acid polypeptide containing an N-terminal signal sequence, a GH110 domain, a carbohydrate-binding module (CBM) 51 domain, a bacterial Ig-like (Big) 2 domain and a C-terminal transmembrane region, in this order. The recombinant enzyme expressed in Escherichia coli hydrolyzed α1,3-linked Gal in branched blood group B antigen [Galα1-3(Fucα1-2)Galß1-R], but not in a linear xenotransplantation antigen (Galα1-3Galß1-R). The enzyme also acted on group B human salivary mucin and erythrocytes. We also revealed that CBM51 specifically bound blood group B antigen using both isothermal titration calorimetry and a solid-phase binding assay, and it enhanced the affinity of the enzyme toward substrates with multivalent B antigens. We suggest that this enzyme plays an important role in degrading B antigens to acquire nutrients from mucin oligosaccharides in the gastrointestinal tracts.


Subject(s)
Bifidobacterium/enzymology , Escherichia coli/enzymology , Polysaccharides , alpha-Galactosidase , ABO Blood-Group System/metabolism , Blood Group Antigens/isolation & purification , Blood Group Antigens/metabolism , Humans , Infant , Infant, Newborn , Intestines/microbiology , Milk, Human/enzymology , Mucins/chemistry , Mucins/metabolism , Polysaccharides/chemistry , Polysaccharides/metabolism , Receptors, Cell Surface/genetics , Receptors, Cell Surface/isolation & purification , alpha-Galactosidase/genetics , alpha-Galactosidase/isolation & purification , beta-Galactosidase/chemistry , beta-Galactosidase/metabolism
18.
Mol Cell Probes ; 27(5-6): 200-7, 2013.
Article in English | MEDLINE | ID: mdl-23831145

ABSTRACT

Enteropathogenic Escherichia coli, or EPEC, is a human pathogen associated with gastroenteritis and diarrheal disease whose pathogenicity is related to the secretion of effector proteins (exotoxins). Determining exotoxin expression level is of considerable interest to those studying toxin function and pathological phenotypes. Mass spectrometry (MS) provides an ideal platform for detection and quantification of proteins from complex mixtures. Here, we apply a solution-phase electrophoretic platform (GELFrEE) followed by MS to characterize the secreted proteome of a wild type and mutant strain of EPEC (ΔsepD), exhibiting enhanced secretion of effector proteins. Through peptide-level analysis, a total of 363 and 155 proteins were identified from the wild type and mutant strains, respectively. Semi-quantitative analysis of the MS data reveals the effector proteins EspB, EspC, and EspD appear in a relatively greater abundance from wild type EPEC, while two major virulence factors in EPEC, Tir and NleA appear in greater abundance from the secreted proteome of the mutant strain. Additionally, intact proteins may further be characterized following GELFrEE with MS to improve throughput of analysis. This study demonstrates the application of GELFrEE-MS to differentiate wild type and mutant strains of EPEC. This platform is therefore a powerful tool to study exotoxin secretion from pathogenic bacteria.


Subject(s)
Bacterial Toxins/analysis , Electrophoresis, Polyacrylamide Gel , Enteropathogenic Escherichia coli/metabolism , Enteropathogenic Escherichia coli/pathogenicity , Escherichia coli Proteins/analysis , Mass Spectrometry , Proteome/analysis , Bacterial Outer Membrane Proteins/analysis , Bacterial Outer Membrane Proteins/isolation & purification , Bacterial Toxins/isolation & purification , Bacterial Toxins/metabolism , Enteropathogenic Escherichia coli/genetics , Escherichia coli Proteins/genetics , Escherichia coli Proteins/isolation & purification , Escherichia coli Proteins/metabolism , Humans , Receptors, Cell Surface/analysis , Receptors, Cell Surface/isolation & purification , Virulence Factors/analysis , Virulence Factors/isolation & purification , Virulence Factors/metabolism
19.
Avian Pathol ; 42(1): 60-71, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23391183

ABSTRACT

Avian influenza (AI) viruses have been detected in more than 105 wild bird species from 12 different orders but species-related differences in susceptibility to AI viruses exist. Expression of α2,3-linked (avian-type) and α2,6-linked (human-type) sialic acid (SA) influenza virus receptors in tissues is considered one of the determinants of the host range and tissue tropism of influenza viruses. We investigated the expression of these SA receptors in 37 wild bird species from 11 different orders by lectin histochemistry. Two isoforms of Maackia amurensis (MAA) lectin, MAA1 and MAA2, were used to detect α2,3-linked SA, and Sambucus nigra lectin was used to detect α2,6-linked SA. All species evaluated expressed α2,3-linked and α2,6-linked SA receptors in endothelial cells and renal tubular epithelial cells. Both α2,3-linked and α-2,6-linked SA receptors were expressed in respiratory and intestinal tract tissues of aquatic and terrestrial wild bird species from different taxa, but differences in SA expression and in the predominant isoform of MAA lectin bound were observed. With a few possible exceptions, these observed differences were not generally predictive of reported species susceptibility to AI viruses based on published experimental and field data.


Subject(s)
Influenza A virus/physiology , Influenza in Birds/metabolism , Lectins/metabolism , Receptors, Cell Surface/metabolism , Receptors, Virus/metabolism , Animals , Birds , Endothelial Cells/metabolism , Endothelial Cells/virology , Epithelial Cells/metabolism , Epithelial Cells/virology , Host Specificity , Influenza in Birds/virology , Intestinal Mucosa/metabolism , Intestines/virology , Maackia/metabolism , Organ Specificity , Protein Isoforms , Receptors, Cell Surface/isolation & purification , Receptors, Virus/isolation & purification , Respiratory System/metabolism , Respiratory System/virology , Species Specificity
20.
Article in English | MEDLINE | ID: mdl-24192376

ABSTRACT

Ethylene is a gaseous plant hormone which controls many aspects of plant growth and development. It is perceived by membrane-bound receptors with a similarity to bacterial two-component systems. The catalytic and ATP-binding domain of the histidine kinase domain of ETR1 from Arabidopsis thaliana has been cloned, overexpressed and crystallized. The protein was crystallized together with various nucleotides. Crystals obtained in the presence of ADP belonged to space group I222 or I2(1)2(1)2(1) with one molecule per asymmetric unit. They diffracted X-ray radiation to beyond 1.85 Šresolution.


Subject(s)
Arabidopsis Proteins/chemistry , Arabidopsis Proteins/isolation & purification , Arabidopsis/metabolism , Catalytic Domain , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/isolation & purification , Cloning, Molecular , Crystallography, X-Ray
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