Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 1.242
Filter
Add more filters

Publication year range
1.
Nature ; 557(7705): 434-438, 2018 05.
Article in English | MEDLINE | ID: mdl-29743671

ABSTRACT

The dense microbial ecosystem in the gut is intimately connected to numerous facets of human biology, and manipulation of the gut microbiota has broad implications for human health. In the absence of profound perturbation, the bacterial strains that reside within an individual are mostly stable over time 1 . By contrast, the fate of exogenous commensal and probiotic strains applied to an established microbiota is variable, generally unpredictable and greatly influenced by the background microbiota2,3. Therefore, analysis of the factors that govern strain engraftment and abundance is of critical importance to the emerging field of microbiome reprogramming. Here we generate an exclusive metabolic niche in mice via administration of a marine polysaccharide, porphyran, and an exogenous Bacteroides strain harbouring a rare gene cluster for porphyran utilization. Privileged nutrient access enables reliable engraftment of the exogenous strain at predictable abundances in mice harbouring diverse communities of gut microbes. This targeted dietary support is sufficient to overcome priority exclusion by an isogenic strain 4 , and enables strain replacement. We demonstrate transfer of the 60-kb porphyran utilization locus into a naive strain of Bacteroides, and show finely tuned control of strain abundance in the mouse gut across multiple orders of magnitude by varying porphyran dosage. Finally, we show that this system enables the introduction of a new strain into the colonic crypt ecosystem. These data highlight the influence of nutrient availability in shaping microbiota membership, expand the ability to perform a broad spectrum of investigations in the context of a complex microbiota, and have implications for cell-based therapeutic strategies in the gut.


Subject(s)
Colon/microbiology , Fecal Microbiota Transplantation , Gastrointestinal Microbiome/physiology , Animals , Bacteroides/growth & development , Bacteroides/isolation & purification , Bacteroides/physiology , Female , Humans , Male , Mice , Sepharose/analogs & derivatives , Sepharose/metabolism
2.
Mar Drugs ; 22(4)2024 Apr 11.
Article in English | MEDLINE | ID: mdl-38667787

ABSTRACT

Porphyran, a sulfated polysaccharide found in various species of marine red algae, has been demonstrated to exhibit diverse bioactivities, including anti-inflammatory effects. However, the protective effects of porphyran against cerebral ischemia and reperfusion (IR) injury have not been investigated. The aim of this study was to examine the neuroprotective effects of porphyran against brain IR injury and its underlying mechanisms using a gerbil model of transient forebrain ischemia (IR in the forebrain), which results in pyramidal cell (principal neuron) loss in the cornu ammonis 1 (CA1) subregion of the hippocampus on day 4 after IR. Porphyran (25 and 50 mg/kg) was orally administered daily for one week prior to IR. Pretreatment with 50 mg/kg of porphyran, but not 25 mg/kg, significantly attenuated locomotor hyperactivity and protected pyramidal cells located in the CA1 area from IR injury. The pretreatment with 50 mg/kg of porphyran significantly suppressed the IR-induced activation and proliferation of microglia in the CA1 subregion. Additionally, the pretreatment significantly inhibited the overexpressions of nucleotide-binding domain, leucine-rich-containing family, pyrin domain-containing protein-3 (NLRP3) inflammasome complex, and pro-inflammatory cytokines (interleukin 1 beta and interleukin 18) induced by IR in the CA1 subregion. Overall, our findings suggest that porphyran exerts neuroprotective effects against brain IR injury, potentially by reducing the reaction (activation) and proliferation of microglia and reducing NLRP3 inflammasome-mediated neuroinflammation.


Subject(s)
CA1 Region, Hippocampal , Gerbillinae , Inflammasomes , NLR Family, Pyrin Domain-Containing 3 Protein , Neuroinflammatory Diseases , Neuroprotective Agents , Reperfusion Injury , Sepharose/analogs & derivatives , Animals , NLR Family, Pyrin Domain-Containing 3 Protein/metabolism , Inflammasomes/metabolism , Inflammasomes/drug effects , Neuroprotective Agents/pharmacology , Male , Reperfusion Injury/drug therapy , CA1 Region, Hippocampal/drug effects , CA1 Region, Hippocampal/pathology , CA1 Region, Hippocampal/metabolism , Neuroinflammatory Diseases/drug therapy , Disease Models, Animal , Microglia/drug effects , Brain Ischemia/drug therapy , Polysaccharides/pharmacology , Neurons/drug effects , Pyramidal Cells/drug effects , Pyramidal Cells/metabolism
3.
FASEB J ; 35(6): e21458, 2021 06.
Article in English | MEDLINE | ID: mdl-33948987

ABSTRACT

Porphyran and its derivatives possess a variety of biological activities, such as ameliorations of oxidative stress, inflammation, hyperlipemia, and immune deficiencies. In this study, we evaluated the potential efficacy of porphyran-derived oligosaccharides from Porphyra yezoensis (PYOs) in alleviating nonalcoholic fatty liver disease (NAFLD) and preliminarily clarified the underlying mechanism. NAFLD was induced by a high-fat diet for six months in C57BL/6J mice, followed by treatment with PYOs (100 or 300 mg/kg/d) for another six weeks. We found that PYOs reduced hepatic oxidative stress in mice with NAFLD, which plays a critical role in the occurrence and development of NAFLD. In addition, PYOs could markedly decrease lipid accumulation in liver by activating the IRS-1/AKT/GSK-3ß signaling pathway and the AMPK signaling pathway in mice with NAFLD. PYOs also apparently relieved the hepatic fibrosis induced by oxidative stress via downregulation of TGF-ß and its related proteins, so that liver injury was markedly alleviated. Furthermore, PYOs treatment relieved cecal microbiota dysbiosis (such as increasing the relative abundance of Akkermansia, while decreasing the Helicobacter abundance), which could alleviate oxidative stress, inflammation, and lipid metabolism, and protect the liver to a certain degree. In summary, PYOs treatment remarkably improved NAFLD via a specific molecular mechanism and reshaped the cecal microbiota.


Subject(s)
Cecum/drug effects , Disease Models, Animal , Dysbiosis/drug therapy , Gastrointestinal Microbiome/drug effects , Non-alcoholic Fatty Liver Disease/drug therapy , Oligosaccharides/pharmacology , Sepharose/analogs & derivatives , Animals , Cecum/microbiology , Dysbiosis/complications , Dysbiosis/microbiology , Lipid Metabolism , Male , Mice , Mice, Inbred C57BL , Non-alcoholic Fatty Liver Disease/microbiology , Non-alcoholic Fatty Liver Disease/pathology , Oligosaccharides/chemistry , Oxidative Stress , Sepharose/chemistry , Signal Transduction
4.
PLoS Comput Biol ; 17(3): e1008855, 2021 03.
Article in English | MEDLINE | ID: mdl-33780447

ABSTRACT

The Sec complex catalyzes the translocation of proteins of the secretory pathway into the endoplasmic reticulum and the integration of membrane proteins into the endoplasmic reticulum membrane. Some substrate peptides require the presence and involvement of accessory proteins such as Sec63. Recently, a structure of the Sec complex from Saccharomyces cerevisiae, consisting of the Sec61 channel and the Sec62, Sec63, Sec71 and Sec72 proteins was determined by cryo-electron microscopy (cryo-EM). Here, we show by co-precipitation that the Sec61 channel subunit Sbh1 is not required for formation of stable Sec63-Sec61 contacts. Molecular dynamics simulations started from the cryo-EM conformation of Sec61 bound to Sec63 and of unbound Sec61 revealed how Sec63 affects the conformation of Sec61 lateral gate, plug, pore region and pore ring diameter via three intermolecular contact regions. Molecular docking of SRP-dependent vs. SRP-independent signal peptide chains into the Sec61 channel showed that the pore regions affected by presence/absence of Sec63 play a crucial role in positioning the signal anchors of SRP-dependent substrates nearby the lateral gate.


Subject(s)
Heat-Shock Proteins , Membrane Transport Proteins , SEC Translocation Channels , Saccharomyces cerevisiae Proteins , Cryoelectron Microscopy , Heat-Shock Proteins/chemistry , Heat-Shock Proteins/metabolism , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/metabolism , Molecular Docking Simulation , Molecular Dynamics Simulation , Protein Conformation , SEC Translocation Channels/chemistry , SEC Translocation Channels/metabolism , Saccharomyces cerevisiae , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/metabolism , Sepharose/analogs & derivatives , Sepharose/chemistry , Sepharose/metabolism
5.
Biotechnol Appl Biochem ; 69(2): 479-491, 2022 Apr.
Article in English | MEDLINE | ID: mdl-33580532

ABSTRACT

Our novel strategy for the rational design of immobilized derivatives (RDID) is directed to predict the behavior of the protein immobilized derivative before its synthesis, by the usage of mathematic algorithms and bioinformatics tools. However, this approach needs to be validated for each target enzyme. The objective of this work was to validate the RDID strategy for covalent immobilization of the enzyme laccase from Trametes maxima MUCL 44155 on glyoxyl- and monoaminoethyl-N-aminoethyl (MANA)-Sepharose CL 4B supports. Protein surface clusters, more probable configurations of the protein-supports systems at immobilization pHs, immobilized enzyme activity, and protein load were predicted by RDID1.0 software. Afterward, immobilization was performed and predictions were experimentally confirmed. As a result, the laccase-MANA-Sepharose CL 4B immobilized derivative is better than laccase-glyoxyl-Sepharose CL 4B in predicted immobilized derivative activity (63.6% vs. 29.5%). Activity prediction was confirmed by an experimentally expressed enzymatic activity of 68%, using 2,6-dimethoxyphenol as substrate. Experimental maximum protein load matches the estimated value (11.2 ± 1.3 vs. 12.1 protein mg/support mL). The laccase-MANA-Sepharose CL 4B biocatalyst has a high specificity for the acid blue 62 colorant. The results obtained in this work suggest the possibility of using this biocatalyst for wastewater treatment.


Subject(s)
Laccase , Trametes , Enzyme Stability , Enzymes, Immobilized/metabolism , Hydrogen-Ion Concentration , Laccase/metabolism , Polyporaceae , Sepharose/analogs & derivatives
6.
Mol Cell Proteomics ; 19(6): 1005-1016, 2020 06.
Article in English | MEDLINE | ID: mdl-32284353

ABSTRACT

Posttranslational modifications play a critical and diverse role in regulating cellular activities. Despite their fundamentally important role in cellular function, there has been no report to date of an effective generalized approach to the targeting, extraction, and characterization of the critical c-terminal regions of natively prenylated proteins. Various chemical modification and metabolic labeling strategies in cell culture have been reported. However, their applicability is limited to cell culture systems and does not allow for analysis of tissue samples. The chemical characteristics (hydrophobicity, low abundance, highly basic charge) of many of the c-terminal regions of prenylated proteins have impaired the use of standard proteomic workflows. In this context, we sought a direct approach to the problem in order to examine these proteins in tissue without the use of labeling. Here we demonstrate that prenylated proteins can be captured on chromatographic resins functionalized with mixed disulfide functions. Protease treatment of resin-bound proteins using chymotryptic digestion revealed peptides from many known prenylated proteins. Exposure of the protease-treated resin to reducing agents and hydro organic mixtures released c-terminal peptides with intact prenyl groups along with other enzymatic modifications expected in this protein family. Database and search parameters were selected to allow for c-terminal modifications unique to these molecules such as CAAX box processing and c-terminal methylation. In summary, we present a direct approach to enrich and obtain information at a molecular level of detail about prenylation of proteins from tissue and cell extracts using high-performance LC-MS without the need for metabolic labeling and derivatization.


Subject(s)
Chromatography, Liquid/methods , Peptides/analysis , Proteins/analysis , Proteomics/methods , Tandem Mass Spectrometry/methods , Amino Acid Sequence , Animals , Brain/metabolism , Databases, Protein , Mice , Peptide Hydrolases/chemistry , Peptides/chemistry , Protein Prenylation , Proteins/chemistry , Sepharose/analogs & derivatives , Sepharose/chemistry
7.
Proc Natl Acad Sci U S A ; 116(13): 6319-6328, 2019 03 26.
Article in English | MEDLINE | ID: mdl-30850549

ABSTRACT

Lipoprotein lipase (LPL), the enzyme that hydrolyzes triglycerides in plasma lipoproteins, is assumed to be active only as a homodimer. In support of this idea, several groups have reported that the size of LPL, as measured by density gradient ultracentrifugation, is ∼110 kDa, twice the size of LPL monomers (∼55 kDa). Of note, however, in those studies the LPL had been incubated with heparin, a polyanionic substance that binds and stabilizes LPL. Here we revisited the assumption that LPL is active only as a homodimer. When freshly secreted human LPL (or purified preparations of LPL) was subjected to density gradient ultracentrifugation (in the absence of heparin), LPL mass and activity peaks exhibited the size expected of monomers (near the 66-kDa albumin standard). GPIHBP1-bound LPL also exhibited the size expected for a monomer. In the presence of heparin, LPL size increased, overlapping with a 97.2-kDa standard. We also used density gradient ultracentrifugation to characterize the LPL within the high-salt and low-salt peaks from a heparin-Sepharose column. The catalytically active LPL within the high-salt peak exhibited the size of monomers, whereas most of the inactive LPL in the low-salt peak was at the bottom of the tube (in aggregates). Consistent with those findings, the LPL in the low-salt peak, but not that in the high-salt peak, was easily detectable with single mAb sandwich ELISAs, in which LPL is captured and detected with the same antibody. We conclude that catalytically active LPL can exist in a monomeric state.


Subject(s)
Lipoprotein Lipase/chemistry , Lipoprotein Lipase/isolation & purification , Animals , CHO Cells , Cattle , Centrifugation, Density Gradient/methods , Chromatography, Affinity , Chromatography, Agarose , Cricetulus , Epitopes , Heparin , Humans , Lipoprotein Lipase/blood , Receptors, Lipoprotein/blood , Receptors, Lipoprotein/chemistry , Receptors, Lipoprotein/isolation & purification , Sepharose/analogs & derivatives , Triglycerides/metabolism , Ultracentrifugation
8.
J Sci Food Agric ; 102(11): 4802-4812, 2022 Aug 30.
Article in English | MEDLINE | ID: mdl-35229291

ABSTRACT

BACKGROUND: Prebiotics, such as algal polysaccharides, can be used to manage metabolic diseases by modulating gut microbiota. However, the effect of Pyropia yezoensis porphyran (PYP), a red algal polysaccharide, on gut microbiota has not been reported. Thus, the objective of this study was to determine effects of PYP on metabolic disorders caused by high sucrose (HS) and underlying mechanisms involved in such effects. RESULTS: Biochemical analysis demonstrated that an HS diet increased triglyceride and circulating sugar contents (metabolic abnormalities) in Drosophila larvae. It also increased the relative abundance of harmful microbiota within the larvae as identified by 16S ribosomal DNA analysis. PYP supplementation at 25 and 50 g kg-1 equivalently reduced metabolic abnormalities in the HS group. Therefore, 25 g kg-1 PYP was selected to investigate its effects on the metabolic pathway and gut microbiota of larvae in the HS group. The activity of PYP in ameliorating metabolic abnormalities by reverse transcription quantitative real-time polymerase chain reaction analysis was consistent with the expression trend of key factors involved in metabolism regulation. PYP reduced the relative abundance of bacteria causing metabolic abnormalities, such as Escherichia-Shigella and Fusobacterium, but increased the relative abundance of beneficial bacteria such as Bacillus and Akkermansia. However, PYP had no effect on triglyceride and circulating sugar contents in HS-fed larvae treated with a mixture of antibiotics designed to remove gut microbiota. CONCLUSION: PYP exhibits anti-metabolic disorder activity by modulating gut microbiota, thereby supporting the development of PYP as a functional prebiotic derived from red algae food. Copyright © 2022 John Wiley & Sons, Ltd. © 2022 Society of Chemical Industry.


Subject(s)
Gastrointestinal Microbiome , Metabolic Diseases , Rhodophyta , Animals , Diet, High-Fat , Drosophila melanogaster/genetics , Metabolic Diseases/drug therapy , Mice , Mice, Inbred C57BL , Polysaccharides/pharmacology , Prebiotics , Sepharose/analogs & derivatives , Sucrose , Triglycerides
9.
Annu Rev Psychol ; 71: 273-303, 2020 01 04.
Article in English | MEDLINE | ID: mdl-31550985

ABSTRACT

Imagine Genghis Khan, Aretha Franklin, and the Cleveland Cavaliers performing an opera on Maui. This silly sentence makes a serious point: As humans, we can flexibly generate and comprehend an unbounded number of complex ideas. Little is known, however, about how our brains accomplish this. Here we assemble clues from disparate areas of cognitive neuroscience, integrating recent research on language, memory, episodic simulation, and computational models of high-level cognition. Our review is framed by Fodor's classic language of thought hypothesis, according to which our minds employ an amodal, language-like system for combining and recombining simple concepts to form more complex thoughts. Here, we highlight emerging work on combinatorial processes in the brain and consider this work's relation to the language of thought. We review evidence for distinct, but complementary, contributions of map-like representations in subregions of the default mode network and sentence-like representations of conceptual relations in regions of the temporal and prefrontal cortex.


Subject(s)
Brain/physiology , Language , Nerve Net/physiology , Sepharose/analogs & derivatives , Thinking/physiology , Humans , Sepharose/physiology
10.
Mar Drugs ; 19(6)2021 Jun 16.
Article in English | MEDLINE | ID: mdl-34208474

ABSTRACT

Some commonly used surfactants in cosmetic products raise concerns due to their skin-irritating effects and environmental contamination. Multifunctional, high-performance polymers are good alternatives to overcome these problems. In this study, agarose stearate (AS) with emulsifying, thickening, and gel properties was synthesized. Surfactant-free cosmetic formulations were successfully prepared from AS and carbomer940 (CBM940) mixed systems. The correlation of rheological parameter with skin feeling was determined to study the usability of the mixed systems in cosmetics. Based on rheological analysis, the surfactant-free cosmetic cream (SFC) stabilized by AS-carbomer940 showed shear-thinning behavior and strongly synergistic action. The SFC exhibited a gel-like behavior and had rheological properties similar to commercial cosmetic creams. Scanning electron microscope images proved that the AS-CBM940 network played an important role in SFC's stability. Oil content could reinforce the elastic characteristics of the AS-CBM940 matrix. The SFCs showed a good appearance and sensation during and after rubbing into skin. The knowledge gained from this study may be useful for designing surfactant-free cosmetic cream with rheological properties that can be tailored for particular commercial cosmetic applications. They may also be useful for producing medicine products with highly viscous or gel-like textures, such as some ointments and wound dressings.


Subject(s)
Acrylic Resins/chemical synthesis , Cosmetics/chemical synthesis , Excipients/chemical synthesis , Sepharose/analogs & derivatives , Viscoelastic Substances/chemical synthesis , Acrylic Resins/chemistry , Cosmetics/chemistry , Excipients/chemistry , Gels , Humans , Microscopy, Electron, Scanning , Rheology , Sepharose/chemical synthesis , Sepharose/chemistry , Skin Cream/chemical synthesis , Skin Cream/chemistry , Spectroscopy, Fourier Transform Infrared , Surface-Active Agents , Viscoelastic Substances/chemistry
11.
Mar Drugs ; 19(2)2021 Jan 23.
Article in English | MEDLINE | ID: mdl-33498781

ABSTRACT

Macroalgae polysaccharides are phytochemicals that are beneficial to human health. In this study, response surface methodology was applied to optimize the extraction procedure of Pyropia yezoensis porphyran (PYP). The optimum extraction parameters were: 100 °C (temperature), 120 min (time), and 29.32 mL/g (liquid-solid ratio), and the maximum yield of PYP was 22.15 ± 0.55%. The physicochemical characteristics of PPYP, purified from PYP, were analyzed, along with its lipid-lowering effect, using HepG2 cells and Drosophila melanogaster larvae. PPYP was a ß-type sulfated hetero-rhamno-galactan-pyranose with a molecular weight of 151.6 kDa and a rhamnose-to-galactose molar ratio of 1:5.3. The results demonstrated that PPYP significantly reduced the triglyceride content in palmitic acid (PA)-induced HepG2 cells and high-sucrose-fed D. melanogaster larvae by regulating the expression of lipid metabolism-related genes, reducing lipogenesis and increasing fatty acid ß-oxidation. To summarize, PPYP can lower lipid levels in HepG2 cells and larval fat body (the functional homolog tissue of the human liver), suggesting that PPYP may be administered as a potential marine lipid-lowering drug.


Subject(s)
Hypolipidemic Agents/isolation & purification , Lipid Metabolism/drug effects , Lipids/antagonists & inhibitors , Rhodophyta , Seaweed/isolation & purification , Sepharose/analogs & derivatives , Animals , Drosophila melanogaster , Hep G2 Cells , Humans , Hypolipidemic Agents/pharmacology , Lipid Metabolism/physiology , Liquid-Liquid Extraction/methods , Sepharose/isolation & purification , Sepharose/pharmacology
12.
Int J Mol Sci ; 22(18)2021 Sep 16.
Article in English | MEDLINE | ID: mdl-34576175

ABSTRACT

BACKGROUND: The STEAP1 is a cell-surface antigen over-expressed in prostate cancer, which contributes to tumor progression and aggressiveness. However, the molecular mechanisms underlying STEAP1 and its structural determinants remain elusive. METHODS: The fraction capacity of Butyl- and Octyl-Sepharose matrices on LNCaP lysates was evaluated by manipulating the ionic strength of binding and elution phases, followed by a Co-Immunoprecipitation (Co-IP) polishing. Several potential stabilizing additives were assessed, and the melting temperature (Tm) values ranked the best/worst compounds. The secondary structure of STEAP1 was identified by circular dichroism. RESULTS: The STEAP1 was not fully captured with 1.375 M (Butyl), in contrast with interfering heterologous proteins, which were strongly retained and mostly eluted with water. This single step demonstrated higher selectivity of Butyl-Sepharose for host impurities removal from injected crude samples. Co-IP allowed recovering a purified fraction of STEAP1 and contributed to unveil potential physiologically interacting counterparts with the target. A Tm of ~55 °C was determined, confirming STEAP1 stability in the purification buffer. A predominant α-helical structure was identified, ensuring the protein's structural stability. CONCLUSIONS: A method for successfully isolating human STEAP1 from LNCaP cells was provided, avoiding the use of detergents to achieve stability, even outside a membrane-mimicking environment.


Subject(s)
Antigens, Neoplasm/metabolism , Oxidoreductases/metabolism , Prostatic Neoplasms/metabolism , Antigens, Neoplasm/genetics , Circular Dichroism , Humans , Immunoprecipitation , Male , Oxidoreductases/genetics , Prostatic Neoplasms/genetics , Protein Stability , Sepharose/analogs & derivatives , Sepharose/chemistry
13.
Molecules ; 26(6)2021 Mar 12.
Article in English | MEDLINE | ID: mdl-33809323

ABSTRACT

In this work, the effect of different immobilization procedures on the properties of a lipase obtained from the extremophilic microorganism Serratia sp. USBA-GBX-513, which was isolated from Paramo soils of Los Nevados National Natural Park (Colombia), is reported. Different Shepharose beads were used: octyl-(OC), octyl-glyoxyl-(OC-GLX), cyanogen bromide (BrCN)-, and Q-Sepharose. The performance of the different immobilized extremophile lipase from Serratia (ESL) was compared with that of the lipase B from Candida antarctica (CALB). In all immobilization tests, hyperactivation of ESL was observed. The highest hyperactivation (10.3) was obtained by immobilization on the OC support. Subsequently, the thermal stability at pH 5, 7, and 9 and the stability in the presence of 50% (v/v) acetonitrile, 50% dioxane, and 50% tetrahydrofuran solvents at pH 7 and 40 °C were evaluated. ESL immobilized on octyl-Sepharose was the most stable biocatalyst at 90 °C and pH 9, while the most stable preparation at pH 5 was ESL immobilized on OC-GLX-Sepharose supports. Finally, in the presence of 50% (v/v) tetrahydrofuran (THF) or dioxane at 40 °C, ESL immobilized on OC-Sepharose was the most stable biocatalyst, while the immobilized preparation of ESL on Q-Sepharose was the most stable one in 40% (v/v) acetonitrile.


Subject(s)
Bacterial Proteins/metabolism , Enzymes, Immobilized/metabolism , Extremophiles/enzymology , Lipase/metabolism , Serratia/enzymology , Basidiomycota/enzymology , Biocatalysis , Enzyme Stability , Fungal Proteins/metabolism , Hot Temperature , Hydrogen-Ion Concentration , Sepharose/analogs & derivatives , Sepharose/chemistry
14.
Molecules ; 26(10)2021 May 14.
Article in English | MEDLINE | ID: mdl-34068969

ABSTRACT

The chemical modification of porphyran hydrocolloid is attempted, with the objective of enhancing its antioxidant and antimicrobial activities. Sulfated galactan porphyran is obtained from commercial samples of the red algae Porphyra dioica using Soxhlet extraction with water at 100 °C and precipitation with isopropyl alcohol. The extracted porphyran is then treated with modified L-tyrosines in aqueous medium in the presence of NaOH, at ca. 70 °C. The modified tyrosines L1 and L2 are prepared through a Mannich reaction with either thymol or 2,4-di-tert-butylphenol, respectively. While the reaction with 2,4-di-tert-butylphenol yields the expected tyrosine derivative, a mixture of products is obtained with thymol. The resulting polysaccharides are structurally characterized and the respective antioxidant and antimicrobial activities are determined. Porphyran treated with the N-(2-hydroxy-3,5-di-tert-butyl-benzyl)-L-tyrosine derivative, POR-L2, presents a noticeable superior radical scavenging and antioxidant activity compared to native porphyran, POR. Furthermore, it exhibited some antimicrobial activity against S. aureus. The surface morphology of films prepared by casting with native and modified porphyrans is studied by SEM/EDS. Both POR and POR-L2 present potential applicability in the production of films and washable coatings for food packaging with improved protecting characteristics.


Subject(s)
Antioxidants/pharmacology , Sepharose/analogs & derivatives , Tyrosine/chemistry , Aerobiosis , Anti-Infective Agents/pharmacology , Benzothiazoles/chemistry , Biphenyl Compounds/chemistry , Escherichia coli/drug effects , Escherichia coli/growth & development , Microbial Sensitivity Tests , Oxidation-Reduction , Picrates/chemistry , Porphyra/chemistry , Proton Magnetic Resonance Spectroscopy , Sepharose/chemistry , Sepharose/isolation & purification , Sepharose/pharmacology , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Staphylococcus aureus/drug effects , Staphylococcus aureus/growth & development , Sulfonic Acids/chemistry , Tyrosine/chemical synthesis
15.
Nat Chem Biol ; 14(4): 342-344, 2018 04.
Article in English | MEDLINE | ID: mdl-29459682

ABSTRACT

Sugar O-methylation shields algal polysaccharides against microbial hydrolytic enzymes. Here, we describe cytochrome P450 monooxygenases from marine bacteria that, together with appropriate redox-partner proteins, catalyze the oxidative demethylation of 6-O-methyl-D-galactose, which is an abundant monosaccharide of the algal polysaccharides agarose and porphyran. This previously unknown biological function extends the group of carbohydrate-active enzymes to include the class of cytochrome P450 monooxygenases.


Subject(s)
Bacteria/enzymology , Carbohydrates/chemistry , Cytochrome P-450 Enzyme System/metabolism , Demethylation , Rhodophyta/chemistry , Cloning, Molecular , Computational Biology , Cytochrome P-450 Enzyme System/genetics , Gas Chromatography-Mass Spectrometry , Hexoses , Hydrogen Peroxide/chemistry , Methylation , NAD/chemistry , Oxidation-Reduction , Phylogeny , Polysaccharides/chemistry , Sepharose/analogs & derivatives , Sepharose/chemistry , Substrate Specificity
16.
FASEB J ; 33(11): 12336-12347, 2019 11.
Article in English | MEDLINE | ID: mdl-31451050

ABSTRACT

Reactive oxygen species (ROS) can act as second messengers in various signaling pathways, and abnormal oxidation contributes to multiple diseases, including cancer. Detecting and quantifying protein oxidation is crucial for a detailed understanding of reduction-oxidation reaction (redox) signaling. We developed an Activated Thiol Sepharose-based proteomic (ATSP) approach to quantify reversible protein oxidation. ATSP can enrich H2O2-sensitive thiol peptides, which are more likely to contain reactive cysteines involved in redox signaling. We applied our approach to analyze hereditary leiomyomatosis and renal cell carcinoma (HLRCC), a type of kidney cancer that harbors fumarate hydratase (FH)-inactivating mutations and has elevated ROS levels. Multiple proteins were oxidized in FH-deficient cells, including many metabolic proteins such as the pyruvate kinase M2 isoform (PKM2). Treatment of HLRCC cells with dimethyl fumarate or PKM2 activators altered PKM2 oxidation levels. Finally, we found that ATSP could detect Src homology region 2 domain-containing phosphatase-2 and PKM2 oxidation in cells stimulated with platelet-derived growth factor. This newly developed redox proteomics workflow can detect reversible oxidation of reactive cysteines and can be employed to analyze multiple physiologic and pathologic conditions.-Xu, Y., Andrade, J., Ueberheide, B., Neel, B. G. Activated Thiol Sepharose-based proteomic approach to quantify reversible protein oxidation.


Subject(s)
Proteins/metabolism , Proteomics/methods , Sepharose/analogs & derivatives , Animals , Carrier Proteins/metabolism , Cells, Cultured , Cysteine/metabolism , Dimethyl Fumarate/pharmacology , Fumarate Hydratase/deficiency , Fumarate Hydratase/metabolism , Membrane Proteins/metabolism , Metabolism, Inborn Errors/metabolism , Muscle Hypotonia/metabolism , Oxidation-Reduction , Psychomotor Disorders/metabolism , Rats , Sepharose/chemistry , Thyroid Hormones/metabolism , Thyroid Hormone-Binding Proteins
17.
PLoS Pathog ; 13(5): e1006081, 2017 May.
Article in English | MEDLINE | ID: mdl-28520808

ABSTRACT

Interactions between early developing Schistosoma mansoni larval stages and the hemolymph of its snail intermediate host represent the first molecular encounter with the snail's immune system. To gain a more comprehensive understanding of this early parasite-host interaction, biotinylated sporocyst tegumental membrane (Mem) proteins and larval transformation proteins (LTP) were affixed to streptavidin-agarose beads and used as affinity matrices to enrich for larval-reactive plasma proteins from susceptible (NMRI) and resistant (BS-90) strains of the snail Biomphalaria glabrata. Nano-LC/MS-MS proteomic analyses of isolated plasma proteins revealed a diverse array of 94 immune-and nonimmune-related plasma proteins. Included among the immune-related subset were pattern recognition receptors (lectins, LPS-binding protein, thioester-containing proteins-TEPs), stress proteins (HSP60 and 70), adhesion proteins (dermatopontins), metalloproteases (A Disintegrin And Metalloproteinase (ADAM), ADAM-related Zn proteinases), cytotoxins (biomphalysin) and a Ca2+-binding protein (neo-calmodulin). Variable immunoglobulin and lectin domain (VIgL) gene family members, including fibrinogen-related proteins (FREPs), galectin-related proteins (GREPs) and C-type lectin-related proteins (CREPs), were the most prevalent of larval-reactive immune lectins present in plasma. FREPs were highly represented, although only a subset of FREP subfamilies (FREP 2, 3 and 12) were identified, suggesting potential selectivity in the repertoire of plasma lectins recognizing larval glycoconjugates. Other larval-binding FREP-like and CREP-like proteins possessing a C-terminal fibrinogen-related domain (FReD) or C-type lectin binding domain, respectively, and an Ig-fold domain also were identified as predicted proteins from the B. glabrata genome, although incomplete sequence data precluded their placement into specific FREP/CREP subfamilies. Similarly, a group of FReD-containing proteins (angiopoeitin-4, ficolin-2) that lacked N-terminal Ig-fold(s) were identified as a distinct group of FREP-like proteins, separate from the VIgL lectin family. Finally, differential appearance of GREPs in BS-90 plasma eluates, and others proteins exclusively found in eluates of the NMRI strain, suggested snail strain differences in the expression of select larval-reactive immune proteins. This hypothesis was supported by the finding that differential gene expression of the GREP in BS-90 and ADAM in NMRI snail strains generally correlated with their patterns of protein expression. In summary, this study is the first to provide a global comparative proteomic analysis of constitutively expressed plasma proteins from susceptible and resistant B. glabrata strains capable of binding early-expressed larval S. mansoni proteins. Identified proteins, especially those exhibiting differential expression, may play a role in determining immune compatibility in this snail host-parasite system. A complete listing of raw peptide data are available via ProteomeXchange using identifier PXD004942.


Subject(s)
Biomphalaria/metabolism , Blood Proteins/metabolism , Helminth Proteins/metabolism , Host-Parasite Interactions , Proteomics , Schistosoma mansoni/physiology , Amino Acid Sequence , Animals , Bacterial Proteins , Biomphalaria/immunology , Biomphalaria/parasitology , Hemolymph/metabolism , Larva , Protein Interaction Mapping , Schistosoma mansoni/immunology , Schistosoma mansoni/metabolism , Sepharose/analogs & derivatives , Sequence Alignment
18.
Bioprocess Biosyst Eng ; 42(1): 1-15, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30238362

ABSTRACT

The hazardous effects of current nanoparticle synthesis methods have steered researchers to focus on the development of newer environmentally friendly and green methods for synthesizing nanoparticles using nontoxic chemicals. The development of environmentally friendly methods of nanoparticle synthesis with different sizes and shapes is one of the pressing challenges for the current nanotechnology. Several novel green approaches for the synthesis of AuNPs have been explored using different natural sources, such as plants, algae, bacteria, and fungi. Among organisms, algae and blue-green algae are of particular interest for nanoparticle synthesis. Gold nanoparticles (AuNPs) have a range of applications in medicine, diagnostics, catalysis, and sensors because of their significant key roles in important fields. AuNPs have attracted a significant interest for use in a variety of applications. The widespread use of AuNPs can be accredited to a combination of optical, physical, and chemical properties as well as the miscellany of size, shape, and surface composition that has been adopted through green synthesis methods.


Subject(s)
Cyanobacteria/physiology , Gold/chemistry , Metal Nanoparticles/chemistry , Nanotechnology/methods , Antioxidants/chemistry , Bacterial Infections/drug therapy , Catalysis , Cell Line, Tumor , Fungi , Green Chemistry Technology , Humans , Nanotechnology/trends , Neoplasms/drug therapy , Plants , Polymers/chemistry , Seaweed , Sepharose/analogs & derivatives , Sepharose/chemistry , Surface Properties
19.
Molecules ; 24(23)2019 Nov 23.
Article in English | MEDLINE | ID: mdl-31771143

ABSTRACT

Opium poppy (Papaver somniferum L.) is an ancient medicinal plant producing pharmaceutically important benzylisoquinoline alkaloids. In the present work we focused on the study of enzyme lipoxygenase (LOX, EC 1.13.11.12) from opium poppy cultures. LOX is involved in lipid peroxidation and lipoxygenase oxidation products of polyunsaturated fatty acids have a significant role in regulation of growth, development and plant defense responses to biotic or abiotic stress. The purpose of this study was to isolate and characterize LOX enzyme from opium poppy callus cultures. LOX was purified by ammonium sulfate precipitation and then followed by hydrophobic chromatography using Phenyl-Sepharose CL-4B and hydroxyapatite chromatography using HA Ultrogel sorbent. Sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis and immunoblotting revealed that LOX from opium poppy cultures was a single monomeric protein showing the relative molecular weight of 83 kDa. To investigate the positional specificity of the LOX reaction, purified LOX was incubated with linoleic acid and the products were analyzed by high-performance liquid chromatography in two steps, firstly with reverse phase (120-5 Nucleosil C18 column) and secondly with normal phase (Zorbax Rx-SIL column). LOX converted linoleic acid primarily to 13-hydroperoxy-(9Z,11E)-octadecadienoic acids (78%) and to a lesser extent 9-hydroperoxy-(10E,12Z)-octadecadienoic acids (22%). Characterization of LOX from opium poppy cultures provided valuable information in understanding LOX involvement in regulation of signaling pathways leading to biosynthesis of secondary metabolites with significant biological activity.


Subject(s)
Linoleic Acid/metabolism , Lipoxygenase/isolation & purification , Lipoxygenase/metabolism , Papaver/growth & development , Chemical Precipitation , Chromatography, High Pressure Liquid , Durapatite/chemistry , Lipid Peroxidation , Molecular Weight , Papaver/enzymology , Plant Proteins/isolation & purification , Plant Proteins/metabolism , Secondary Metabolism , Sepharose/analogs & derivatives , Sepharose/chemistry
20.
Molecules ; 24(23)2019 Nov 25.
Article in English | MEDLINE | ID: mdl-31775255

ABSTRACT

Seaweeds are some of the largest producers of biomass in the marine environment and are rich in bioactive compounds that are often used for human and animal health. Porphyran and carrageenan are natural compounds derived from red seaweeds. The former is a characteristic polysaccharide of Porphyra, while the latter is well known from Chondrus, Gigartina, and various Eucheuma species, all in Rhodophyceae. The two polysaccharides have been found to have anti-cancer activity by improving immunity and targeting key apoptotic molecules and therefore deemed as potential chemotherapeutic or chemopreventive agents. This review attempts to review the current study of anti-cancer activity and the possible mechanisms of porphyran and carrageenan derived from red seaweeds to various cancers, and their cooperative actions with other anti-cancer chemotherapeutic agents is also discussed.


Subject(s)
Carrageenan/therapeutic use , Neoplasms/drug therapy , Seaweed/chemistry , Sepharose/analogs & derivatives , Carrageenan/chemistry , Humans , Immunity/drug effects , Neoplasms/immunology , Polysaccharides/chemistry , Sepharose/chemistry , Sepharose/therapeutic use
SELECTION OF CITATIONS
SEARCH DETAIL