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1.
Gynecol Endocrinol ; 30(4): 302-6, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24456032

RESUMEN

Chromosomal translocations have been reported in a number of women undergoing cytogenetic studies for amenorrhoea and gonadal dysgenesis. This study was taken up to emphasize the role of X chromosome and to know the frequency of X-autosomal translocations in women with amenorrhoea in Indian population. Cytogenetic analysis was carried out in 1567 subjects referred for amenorrhoea during the period 2002-2012. GTG-banding was performed from peripheral blood lymphocyte cultures to detect the chromosome abnormalities in all the cases. The karyotype results revealed 43.6% cases with chromosomal abnormalities (n = 683 of 1567 cases). The X-autosomal translocations was found in 2.64% (n = 18 of 683 cases). The common chromosomes involved with X were chromosomes 2, 4, 14 and 20. The translocations involved both p and q arms of the X chromosome.The break point "q26" of X was observed in the majority of the cases. Two interesting cases are discussed: one with three way translocation and another with two translocations. A high number of primary amenorrhoea (PA) and secondary amenorrhoea (SA) cases were involved in X-auto translocation which clearly reveals that chromosomal analysis plays an important role in the evaluation of amenorrhoea.


Asunto(s)
Amenorrea/genética , Cromosomas Humanos X , Translocación Genética , Adolescente , Adulto , Femenino , Humanos , India , Cariotipificación , Adulto Joven
2.
Indian J Cancer ; 59(3): 419-421, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36412315

RESUMEN

Acute promyelocytic leukemia (APL) is a type of acute myeloid leukemia (AML) characterized by the presence of t(15;17)(q22;q21) translocation leading to fusion between PML and RARa gene. Treatment combining all-trans retinoic acid (ATRA) and arsenic trioxide (ATO) has dramatically improved the prognosis of APL. We report a rare finding of primary clone of t(15;17) followed by a sequential clonal evolution of additional derivative chromosome 6 formation by a two hit mechanism. Our case showed a good clinical response with a four years and nine months event free survival after ATRA and ATO combination therapy in spite of existence of three chromosomal abnormalities stating that targeted therapy overcomes the adverse effects of additional genetic markers. However, close monitoring with assessment for long term prognostic behavior is required.


Asunto(s)
Arsenicales , Leucemia Promielocítica Aguda , Humanos , Óxidos , Leucemia Promielocítica Aguda/tratamiento farmacológico , Leucemia Promielocítica Aguda/genética , Trióxido de Arsénico/uso terapéutico , Tretinoina , Aberraciones Cromosómicas
3.
Cancer Invest ; 28(1): 63-73, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19995225

RESUMEN

Mutation of the FMS-like tyrosine kinase 3 (FLT3) gene in Indian population remains unclear till date. Here, we found FLT3-ITD mutations in 19.1%, FLT3-Asp835 mutations in 4.7%, and dual mutations in 4.2%, accounting for overall mutation in 28% of acute myeloid leukemia (AML) patients. FLT3 mutation was more prevalent in APL than non-APL patients (32.2% vs 26.3%), adults tend to show higher incidence than children (30.6% vs 18.2%, p = .1), and were significantly associated with normal karyotype, high WBCs, with no specific distribution in FAB subtypes. Notably, FLT3 mutation was present in 50% of patients with NPM1-Mt, when compared to only 22.6% of patients with NPM1-wt (p < .001). Sequence analyses of internal tandem duplications (ITDs) revealed that duplications were mostly restricted to JM domain (3 to 165 nucleotides). Interestingly, 92.3% cases showed duplication of at least one amino acid (AA) within the stretch Y589 to K602 that includes the two SH2-binding motifs. Analysis of frequency of single AA in the duplicated region revealed that E598 was the most frequently duplicated single AA in 72%, followed by R595 (69.2%), and Y599 (66.7%). Finally, three types of point mutations were identified, including D835Y, D835H, and D835A.


Asunto(s)
Regulación Enzimológica de la Expresión Génica , Regulación Leucémica de la Expresión Génica , Leucemia Mieloide Aguda/genética , Mutación Puntual , Secuencias Repetidas en Tándem , Tirosina Quinasa 3 Similar a fms/genética , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Secuencia de Aminoácidos , Niño , Preescolar , Análisis Mutacional de ADN , Femenino , Frecuencia de los Genes , Humanos , Hibridación Fluorescente in Situ , India/epidemiología , Lactante , Cariotipificación , Leucemia Mieloide Aguda/enzimología , Leucemia Mieloide Aguda/etnología , Masculino , Persona de Mediana Edad , Datos de Secuencia Molecular , Proteínas Nucleares/genética , Nucleofosmina , Adulto Joven
4.
Hematol Oncol ; 27(2): 90-7, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19365794

RESUMEN

Mutations in the nucleophosmin (NPM1) gene have been recently described to occur in about one-third of acute myeloid leukaemias (AMLs) and represent the most frequent genetic alteration currently known in this subset, specially in those with normal karyotype. This study explored the prevalence and clinical profile of NPM1 mutations in a cohort of 200 Indian adult and children with AML. NPM1 mutations were observed in 19.5% of all population and 34.2% of those with normal karyotype. Adults had a significantly higher incidence of NPM1 mutations than children [38 of 161 (23.6%) vs. 1 of 39 (2.5%), p = 0.002]. NPM1 mutations were significantly associated with normal karyotype (p = 0.001), high WBC count (p = 0.034), AML-M4 subtype (p = 0.039) and a gradient increase of mutation rate with the increase in age groups. Sequence analysis of 39 mutated cases revealed typical mutations (types A, B, D, Nm and H*) as well as two novel variations (types F1 and F2). Majority of the patients had mutation type A (69.2%), followed by B (5.1%), D (15.3%), H* (2.5%) and Nm (2.5%) all involving COOH terminal of the NPM1 protein. In conclusion, this study represents the first report of NPM1 mutation from Indian population and confirms that the incidence of NPM1 mutations varies considerably globally, with slightly lower incidence in Indian population compared to western countries. The current study also served to identify two novel NPM1 mutants that add new insights into the heterogeneity of genomic insertions at exon 12. More ongoing larger studies are warranted to elucidate the molecular pathogenesis of AML that arises in this part of the world. Furthermore, we believe that in light of its high prevalence worldwide, inclusion of NPM1 mutation detection assay in diagnostic evaluations of AML may improve the efficacy of routine genetic characterization and allow assignment of patients to better-defined risk categories.


Asunto(s)
Leucemia Mieloide/genética , Proteínas Nucleares/genética , Enfermedad Aguda , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Niño , Preescolar , Análisis Mutacional de ADN , ADN de Neoplasias/genética , Exones/genética , Femenino , Frecuencia de los Genes , Salud Global , Humanos , Hibridación Fluorescente in Situ , India/epidemiología , Lactante , Cariotipificación , Leucemia Mieloide/diagnóstico , Leucemia Mieloide/epidemiología , Masculino , Persona de Mediana Edad , Mutagénesis Insercional , Nucleofosmina , Adulto Joven
5.
J Hum Reprod Sci ; 12(1): 72-74, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31007471

RESUMEN

Double reciprocal translocations and triple-balanced reciprocal translocations multiple chromosome rearrangements are very rare events in the phenotypically normal individuals. Chromosome analysis with 500-band resolution was performed and analyzed in an infertile woman. Her karyotype revealed 46,XX, t(1;3) (q44;p11), t(2;14) (q11.2;q13), t(9;11) (p22;p15) pattern in all the metaphases. To the best of our knowledge, this is the first case of triple-balanced reciprocal translocations in an infertile woman.

6.
J Obstet Gynaecol India ; 69(5): 457-461, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31598050

RESUMEN

OBJECTIVE: To verify the prevalence of chromosomal abnormalities in women with primary amenorrhoea in India aiming at appropriate genetic counselling. METHODS: In a 16-year retrospective (2001-2016) study, 3776 women with primary amenorrhoea were evaluated. Chromosomal analysis of all the cases was done by GTG banding. Clinical history and other laboratory findings were taken into consideration to determine the diagnosis. RESULTS: The karyotype results revealed 31.2% cases with chromosomal abnormalities (n = 1177/3776). In patients with abnormal chromosome complement, 31.2% exhibited numerical aberrations (n = 367) and 34.9% with structural aberrations (n = 411). About 33.9% of cases were with XY male karyotype (n = 399). CONCLUSION: As per the literature till date, this study is the largest with high incidence of chromosomal abnormalities; early detection of abnormalities is necessary for guidance to reproductive management and genetic counselling.

7.
Cancer Genet Cytogenet ; 180(2): 153-7, 2008 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-18206543

RESUMEN

Acute myeloid leukemia (AML) is a malignant neoplasm of hematopoietic stem cells characterized by an abnormal proliferation of myeloid precursors, a reduced rate of apoptosis, and an arrest in cellular differentiation. The present report deals with the results of hematologic, immunophenotypic, cytogenetic, fluorescence in situ hybridization (FISH), and molecular analyses of a 53-year-old female patient diagnosed with AML-M2. Cytogenetic and FISH analysis revealed a complex translocation involving three chromosomes showing t(1;8;21)(p35;q22;q22). The observation of breakpoints at 8q22 and 21q22 suggests a rearrangement of the ETO and AML1 genes, respectively. Using a dual-color FISH test with ETO and AML1 probes, an AML1/ETO fusion signal on the derivative 1p35 instead of der(8) was demonstrated. To the best of our knowledge, this is the first report about the relocation of the AML1/ETO fusion gene to the 1p35 rather than der(8), suggesting the presence of a novel variant of t(8;21)(q22;q22) in the observed patient.


Asunto(s)
Cromosomas Humanos Par 1 , Cromosomas Humanos Par 21 , Cromosomas Humanos Par 8 , Subunidad alfa 2 del Factor de Unión al Sitio Principal/genética , Leucemia Mieloide Aguda/genética , Proteínas de Fusión Oncogénica/genética , Translocación Genética , Secuencia de Bases , Mapeo Cromosómico , Análisis Citogenético , Femenino , Humanos , Hibridación Fluorescente in Situ , Persona de Mediana Edad , Proteína 1 Compañera de Translocación de RUNX1
8.
Cancer Genet ; 216-217: 120-127, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-29025586

RESUMEN

Cytogenetics is a critical independent prognostic factor in myelodysplastic syndromes (MDS). Conventional cytogenetics (CC) and Fluorescence in situ hybridization (FISH) Panel Testing are extensively used for the prognostic stratification of MDS, although the FISH test is not yet a bona fide component of the International Prognostic Scoring System (IPSS). The present study compares the utility of CC and FISH to detect chromosomal anomalies and in prognostic categorization. GTG-Banding and FISH Panel Testing specifically for -5/-5q, -7/-7q, +8 and -20q was performed on whole blood or bone marrow samples from 136 patients with MDS. Chromosomal anomalies were found in 40 cases by CC, including three novel translocations. FISH identified at least one anomaly in 54/136 (39.7%) cases. More than one anomaly was found in 18/54 (33.3%) cases, therefore, overall FISH identified 75 anomalies of which 32 (42.6%) were undetected by CC. FISH provided additional information in cases with CC failure and in cases with a normal karyotype. Further, in ten cases with an abnormal karyotype, FISH could identify additional anomalies, increasing the number of abnormalities per patient. Although CC is the gold standard in the cytogenetic profiling of MDS, FISH has proven to be an asset in identifying additional abnormalities. The number of anomalies per patient can predict the prognosis in MDS and hence, FISH contributed towards prognostic re-categorization. The FISH Panel testing should be used as an adjunct to CC, irrespective of the adequacy of the number of metaphases in CC, as it improves the prognostic classification of MDS.


Asunto(s)
Citogenética/métodos , Hibridación Fluorescente in Situ/métodos , Síndromes Mielodisplásicos/diagnóstico , Síndromes Mielodisplásicos/genética , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Médula Ósea/patología , Bandeo Cromosómico , Femenino , Humanos , Cariotipificación , Masculino , Persona de Mediana Edad , Pronóstico
9.
Asian Pac J Cancer Prev ; 7(3): 423-6, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-17059336

RESUMEN

Chronic myeloid leukemia (CML) is a malignant neoplasm of hematopoietic cells characterized by abnormal proliferation of myeloid precursors, decreased rates of self destruction and an arrest in cellular differentiation. The bone marrow and peripheral blood accumulates all forms of mature and immature granulocytes, primarily blast cells. It is the most common type of leukemia seen in India, accounting for 30% of all leukemias. Cytogenetic analysis plays a vital and important role in the diagnosis of CML patients. The present study consists of cytogenetic evaluation of 175 CML cases from the Indian population with ages ranging from 6-86 years (mean of 42.8). The study population included 115 males (65.72%) and 60 females (34.28%) with a Male: Female ratio 1.9:1. Out of the 175 cases, 164 (93.7%) were successfully karyotyped while culture failure was observed for 11 (6.3%). Among the 164 reported cases, 53 (32.3%) showed a normal karyotype while within the 111 (67.7%) abnormal cases, 96 cases (86.5%) showed the presence of Philadelphia (Ph') chromosome with standard translocation t(9;22); Ph'+ve along with secondary aberrations was detected in 9 (8.1%) cases. Variants of Ph' chromosome were detected in only one case (0.9%). Ph'-ve CML with other chromosomal aberrations were detected in 5 (4.5%) cases, including +8, del 20q, del 11q and marker chromosome. Furthermore, we believe that availability of more advanced molecular techniques can be used as a supportive tool in CML diagnosis even though it cannot fully replace cytogenetics, which remains the backbone for laboratory investigation of the disease.


Asunto(s)
Aberraciones Cromosómicas , Leucemia Mielógena Crónica BCR-ABL Positiva/genética , Leucemia Mieloide Crónica Atípica BCR-ABL Negativa/genética , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Médula Ósea/patología , Niño , Femenino , Humanos , India , Cariotipificación , Masculino , Persona de Mediana Edad , Cromosoma Filadelfia , Translocación Genética
10.
Asian Pac J Cancer Prev ; 17(8): 3989-95, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27644650

RESUMEN

BACKGROUND: Childhood acute lymphoblastic leukemia (ALL) is a heterogeneous genetic disease and its etiology remains poorly understood. Recent genome wide association and replication studies have highlighted specic polymorphisms contributing to childhood ALL predispositions mostly in European populations. It is unclear if these observations generalize to other populations with a lower incidence of ALL. The current case-control study evaluated variants in ARID5B (rs7089424, rs10821936), IKZF1 (rs4132601) and CEBPE (rs2239633) genes, which appear most significantly associated with risk of developing childhood B-lineage ALL. MATERIALS AND METHODS: Using TaqMan assays, genotyping was conducted for 162 de novo B-lineage ALL cases and 150 unrelated healthy controls in India. Appropriate statistical methods were applied. RESULTS: Genotypic and allelic frequencies differed significantly between cases and controls at IKZF1-rs4132601 (p=0.039, p=0.015) and ARID5B-rs10821936 (p=0.028, p=0.026). Both rs10821936 (p=0.019; OR 0.67; 95% CI=0.47-0.94) and rs4132601 (p=0.018; OR 0.67; 95%CI 0.48-0.94) were associated with reduced disease risk. Moreover, gender- analysis revealed male-specific risk associations for rs10821936 (p=0.041 CT+CC) and rs4132601 (p=0.005 G allele). Further, ARID5B-rs7089424 and CEBPE-rs2239633 showed a trend towards decreased disease risk but without significance (p=0.073; p=0.73). CONCLUSIONS: Our findings provide the rst evidence that SNPs ARID5B- rs10821936 and IKZF1-rs4132601 are associated with decreased B-lineage ALL susceptibility in Indian children. Understanding the effects of these variants in different ethnic groups is crucial as they may confer different risk of ALL within different populations.


Asunto(s)
Proteínas Potenciadoras de Unión a CCAAT/genética , Proteínas de Unión al ADN/genética , Predisposición Genética a la Enfermedad/genética , Factor de Transcripción Ikaros/genética , Polimorfismo de Nucleótido Simple/genética , Leucemia-Linfoma Linfoblástico de Células Precursoras/genética , Factores de Transcripción/genética , Adolescente , Adulto , Alelos , Estudios de Casos y Controles , Niño , Femenino , Frecuencia de los Genes/genética , Estudio de Asociación del Genoma Completo/métodos , Genotipo , Humanos , India , Masculino , Persona de Mediana Edad , Estudios Retrospectivos , Factores de Riesgo , Adulto Joven
11.
J Cancer Res Ther ; 11(4): 1037, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26881646

RESUMEN

Chronic myeloid leukemia (CML) is characterized by the Philadelphia (Ph) chromosome created by the reciprocal translocation t(9;22) (q34;q11), resulting in the chimeric BCR-ABL oncogene. Variant Ph' chromosome translocations involving additional chromosomes are seen in 5-10% of CML cases. In the present study, a novel case of Ph' chromosome-positive CML is reported, with a three-way translocation involving chromosomal regions, 9q34, 22q11.2 and 17p11.2, with additional secondary changes. The three-way translocation has resulted in a deletion of the TP53 gene located on the chromosome 17p13.1 locus. Deletion of the TP53 gene may be a major contributing factor in the development of resistance to imatinib and blast crisis.


Asunto(s)
Crisis Blástica/genética , Leucemia Mielógena Crónica BCR-ABL Positiva/genética , Eliminación de Secuencia , Translocación Genética/genética , Proteína p53 Supresora de Tumor/genética , Adulto , Crisis Blástica/patología , Bandeo Cromosómico , Cromosomas Humanos Par 17/genética , Cromosomas Humanos Par 22/genética , Cromosomas Humanos Par 9/genética , Humanos , Hibridación Fluorescente in Situ , Cariotipificación , Leucemia Mielógena Crónica BCR-ABL Positiva/patología , Masculino , Cromosoma Filadelfia , Pronóstico
12.
Asian Pac J Cancer Prev ; 16(16): 7219-29, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26514515

RESUMEN

BACKGROUND: Chromosomal aberrations identified in acute lymphoblastic leukemia (ALL) have an important role in disease diagnosis, prognosis and management. Information on karyotype and associated clinical parameters are essential to physicians for planning cancer control interventions in different geographical regions. MATERIALS AND METHODS: In this study, we present the overall frequency and distribution patterns of chromosomal aberrations in both children and adult de novo B lineage ALL Indian patients using conventional cytogenetics, interphase FISH and multiplex RT-PCR. RESULTS: Among the 215 subjects, cytogenetic results were achieved in 172 (80%) patients; normal karyotype represented 37.2% and abnormal 62.8% with a distribution as follows: 15.3% hypodiploidy; 10.3% hyperdiploidy; 15.8% t(9;22); 9.8% t(1;19); 3.7% t(12;21); 2.8% t(4;11); 2.8% complex karyotypes. Apart from these, we observed several novel, rare and common chromosomal rearrangements. Also, FISH studies using LSI extra-signal dual-color probes revealed additional structural or numerical changes. CONCLUSIONS: These results demonstrate cytogenetic heterogeneity of ALL and confirm that the incidence of chromosomal abnormalities varies considerably. To the best of our knowledge, this is one of the largest reported series of cytogenetic investigations in Indian B-lineage ALL cases. In addition, ongoing cytogenetic studies are warranted in larger groups of B-lineage ALL cases to identify newly acquired chromosomal abnormalities that may contribute to disease diagnosis and management.


Asunto(s)
Aberraciones Cromosómicas , Análisis Citogenético/métodos , Proteínas de Fusión Oncogénica/genética , Leucemia-Linfoma Linfoblástico de Células Precursoras B/genética , Adolescente , Adulto , Anciano , Niño , Preescolar , Femenino , Estudios de Seguimiento , Humanos , India/epidemiología , Lactante , Recién Nacido , Masculino , Persona de Mediana Edad , Estadificación de Neoplasias , Leucemia-Linfoma Linfoblástico de Células Precursoras B/diagnóstico , Leucemia-Linfoma Linfoblástico de Células Precursoras B/epidemiología , Pronóstico , Adulto Joven
13.
Asian Pac J Cancer Prev ; 15(3): 1247-53, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24606448

RESUMEN

Mutations in the DNMT3A and IDH genes represent the most common genetic alteration after FLT3/NPM1 in acute myeloid leukemia (AML). We here analyzed the frequency and distribution pattern of DNMT3A and IDH mutations and their associations with other molecular markers in normal karyotype AML patients. Forty- five patients were screened for mutations in DNMT3A (R882), IDH1 (R132) and IDH2 (R140 and R172) genes by direct sequencing. Of the 45 patients screened, DNMT3A and IDH mutations were observed in 6 (13.3%) and 7 (15.4%), respectively. Patients with isolated DNMT3A mutations were seen in 4 cases (9%), isolated IDH mutations in 5 (11.1%), while interestingly, two cases showed both DNMT3A and IDH mutations (4.3%). Nucleotide sequencing of DNMT3A revealed missense mutations (R882H and R882C), while that of IDH revealed R172K, R140Q, R132H and R132S. Both DNMT3A and IDH mutations were observed only in adults, with a higher frequency in males. DNMT3A and IDH mutations were significantly associated with NPM1, while trends towards higher coexistence with FLT3 mutations were observed. This is the first study to evaluate DNMT3A/ IDH mutations in Indian patients. Significant associations among the various molecular markers was observed, that highlights cooperation between them and possible roles in improved risk stratification.


Asunto(s)
ADN (Citosina-5-)-Metiltransferasas/genética , Isocitrato Deshidrogenasa/genética , Leucemia Mieloide Aguda/genética , Adulto , Pueblo Asiatico/genética , Secuencia de Bases , Biomarcadores de Tumor/genética , ADN Metiltransferasa 3A , Femenino , Humanos , India , Masculino , Persona de Mediana Edad , Tasa de Mutación , Mutación Missense , Proteínas Nucleares/genética , Nucleofosmina , Análisis de Secuencia de ADN , Tirosina Quinasa 3 Similar a fms/genética
14.
Pathol Res Pract ; 210(12): 1090-4, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25286747

RESUMEN

The strong association of diagnostic karyotype with clinical outcome has made cytogenetics one of the most valuable diagnostic and prognostic tools for acute myeloid leukemia (AML) till today. Complex chromosomal findings are reported to be seen in nearly 10-15% of adult AMLs and are generally associated with poor outcome. In the current report, we present the results of hematologic, immunophenotypic, cytogenetic, chromosomal microarray and molecular analyses of a 60-year-old female patient diagnosed with AML-M2. Cytogenetic analysis revealed complex chromosomal findings involving seven different chromosomes. However, cytogenetic analyses were not able to precisely unveil all karyotypic changes, hence chromosomal microarray was used for further characterization. The most interesting observation was identification of a t(7;12) (q11;q22) as part of this complex karyotype. To the best of our knowledge, this is the first report of identification of novel t(7;12) (q11;q22) as part of a complex karyotype in de novo AML-M2.


Asunto(s)
Cromosomas Humanos Par 12 , Cromosomas Humanos Par 7 , Cariotipo , Leucemia Mieloide Aguda/genética , Translocación Genética/genética , Citogenética/métodos , Femenino , Humanos , Cariotipificación/métodos , Persona de Mediana Edad , Pronóstico
15.
Genet Test Mol Biomarkers ; 16(7): 707-15, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22731647

RESUMEN

BACKGROUND AND AIM: Mutation in the CAAT/enhancer binding protein-α (CEBPA) gene has been reported as being one of the common genetic abnormalities in acute myeloid leukemia (AML) and is associated with a good clinical outcome. We intend to explore the prevalence of CEBPA mutations and evaluate the efficacy of fragment and sequencing analysis methods for CEBPA mutation detection in Indian AML patients. MATERIALS AND METHODS: The coding region of the CEBPA gene was screened in 36 normal karyotype AML patients by fragment analysis and direct sequencing. RESULTS: We identified five CEBPA sequence variations in three patient samples (8.3%) by direct sequencing analysis, of which three were novel mutations. These mutations were clustered mostly in the TAD1 and basic region leucine zipper region of the CEBPA protein. Six cases demonstrated a previously reported polymorphism. Two of the three positive cases showed double mutations, and one case had a single mutation. All five mutations were also detected by fragment analysis, indicating a sensitivity of 100% (5/5). No correlation with clinical parameters including age, sex, white blood cell count, hemoglobin, and platelet count between patients with and without mutation was observed. Interestingly, CEBPA mutations were significantly higher in patients with WT1 mutation, while no correlation with FLT3 and NPM1 was observed. CONCLUSION: We report for the first time the frequency of CEBPA mutation from an Indian patients (8.3%). The identification of novel CEBPA mutations added new insights into the genetic heterogeneity of AML. Our result suggests that the optimal approach for detecting CEBPA mutations in AML can be a combination of fragment analysis and direct sequencing.


Asunto(s)
Proteínas Potenciadoras de Unión a CCAAT/genética , Leucemia Mieloide Aguda/genética , Mutación , Sistemas de Lectura Abierta/genética , Adulto , Anciano , Proteínas Potenciadoras de Unión a CCAAT/metabolismo , Análisis Mutacional de ADN/métodos , Femenino , Humanos , India/epidemiología , Leucemia Mieloide Aguda/epidemiología , Leucemia Mieloide Aguda/metabolismo , Masculino , Persona de Mediana Edad , Nucleofosmina , Polimorfismo Genético
16.
Genet Test Mol Biomarkers ; 16(4): 239-45, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22023243

RESUMEN

AIMS: The HER-2/neu proto-oncogene is amplified in 15%-25% of breast cancers. In the current study, we evaluated HER-2/neu status of 396 cases of breast cancer by fluorescence in situ hybridization (FISH), and the results were correlated with immunohistochemistry (IHC) for HER-2/neu protein expression. RESULTS: Overall, HER-2/neu amplification was observed in 38.4% of cases. Concordance between IHC and FISH was 90.4% considering only IHC score 0, 1 (negative), and 3 (positive). However, only 37.3% of the IHC score 2 (equivocal) cases showed HER-2/neu gene amplification. A majority of the discordant cases within the IHC negative (score 0 and 1) and IHC positive (score 3) were high-grade tumors. Polysomy 17 and monosomy 17 was seen in 7.3% of the total cases of each. Furthermore, a majority of FISH positive cases were noted in Intraductal Carcinoma grade III and cases with regional lymph nodal metastasis. Polysomy 17 was seen in 7.9% of the FISH positive cases and in 6.3% of the FISH negative cases. Monosomy 17, however was more preponderant in FISH negative cases. CONCLUSION: We believe that the FISH test should be considered as the gold standard in the estimation of the HER-2/neu status due to its increased sensitivity and better appreciation of aneusomy 17.


Asunto(s)
Aneuploidia , Neoplasias de la Mama/genética , Carcinoma Intraductal no Infiltrante/genética , Cromosomas Humanos Par 17/genética , Hibridación Fluorescente in Situ/métodos , Receptor ErbB-2/genética , Neoplasias de la Mama/metabolismo , Neoplasias de la Mama/patología , Carcinoma Intraductal no Infiltrante/metabolismo , Carcinoma Intraductal no Infiltrante/patología , Femenino , Genes erbB-2 , Humanos , Inmunohistoquímica/métodos , India , Persona de Mediana Edad , Proto-Oncogenes Mas , Receptor ErbB-2/metabolismo
17.
Int J Gynaecol Obstet ; 116(3): 253-7, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22153613

RESUMEN

OBJECTIVE: To assess the frequency of balanced autosomal translocations in patients with primary amenorrhea in an Indian population. METHODS: Cytogenetic analysis was carried out among women referred from all parts of India for primary amenorrhea between 2002 and 2010. Clinical history and laboratory findings were taken into consideration to determine the diagnosis. G-banding with trypsin-Giemsa was performed to detect chromosome abnormalities. RESULTS: There were 15 balanced autosomal translocations in 1100 patients. Two novel translocations were identified: 1 with mosaic pattern of X chromosome monosomy and male karyotype, together with balanced autosomal translocation of chromosomes 11 and 20 in both cell lines; and 1 with double Robertsonian translocation of chromosomes 14 and 21. CONCLUSION: Autosomal genes have a crucial role in reproductive development. More candidate genes need to be recognized for appropriate genetic counseling and clinical management.


Asunto(s)
Amenorrea/genética , Translocación Genética , Adolescente , Adulto , Cromosomas Humanos Par 11 , Cromosomas Humanos Par 14 , Cromosomas Humanos Par 20 , Cromosomas Humanos Par 21 , Cromosomas Humanos X , Análisis Citogenético , Femenino , Humanos , India , Aberraciones Cromosómicas Sexuales , Adulto Joven
18.
Leuk Lymphoma ; 52(5): 865-76, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21504297

RESUMEN

Mutations of the WT1 gene have been reported as the most common abnormality after NPM1 and FLT3 gene mutations in acute myeloid leukemia (AML), while KIT mutations are predominantly found in core-binding factor (CBF) AMLs. We report for the first time the prevalence and distribution patterns of WT1 and KIT mutations in an Indian population of 150. Overall, 10 (6.7%) and four (2.7%) of the cases had WT1 and KIT mutations, respectively. Of the six mutations observed in exon 7, five were frameshift while the remaining one case showed a substitution mutation. In contrast to exon 7, no frameshift mutation was detected in exon 9, where all mutations were substitution mutations. Interestingly, we observed a novel mutation in exon 8 of the KIT gene resulting from the deletion of nine nucleotides and insertion of three nucleotides affecting the extracellular domain of the KIT receptor, while Asp816Tyr and Asp816His were commonly found in exon 17 of the KIT gene. The WT1 mutation was more prevalent in normal karyotype AML while KIT was associated with t(8;21). With respect to FLT3 and NPM1 mutations, WT1 was more predominant in FLT3 positive cases and less in NPM1 mutation cases, while no KIT mutation was found in FLT3/NPM1 positive cases.


Asunto(s)
Leucemia Mieloide Aguda/genética , Mutación , Proteínas Proto-Oncogénicas c-kit/genética , Proteínas WT1/genética , Análisis Mutacional de ADN , Exones , Humanos , Incidencia , India/epidemiología , Cariotipificación , Leucemia Mieloide Aguda/epidemiología , Proteínas Nucleares/genética , Nucleofosmina , Tirosina Quinasa 3 Similar a fms/genética
19.
Cancer Genet ; 204(2): 103-7, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21504708

RESUMEN

Hepatosplenic T-cell lymphomas (HSTCL) are rare cancers and comprise 5% of peripheral T-cell lymphomas. These well-characterized extranodal lymphomas have a disguised onset, secondary to intrasinusoidal infiltration of the spleen, liver, and bone marrow, with a rapidly progressive course that is poorly responsive to chemotherapy and often ensues in the setting of immune system suppression. We describe the clinical, immunophenotypic, cytogenetic, fluorescence in situ hybridization, and molecular analyses for T cell receptor gene rearrangement in a 21-year-old man diagnosed with HSTCL. Immunophenotypic analysis revealed negativity for CD5 as well as double negativity for CD4/CD8 mature T-cell immunophenotype, which suggested the diagnosis of hepatosplenic T-cell lymphoma. Molecular analysis confirmed a TCR gene rearrangement, thereby verifying the common T-cell origin of the present HSTCL case. Furthermore, cytogenetic analysis revealed a novel chromosomal rearrangement, t(7;15)(p22;q21). Metaphase fluorescence in situ hybridization analysis confirmed the translocation of a chromosomal segment from 15q21 to 7p22.


Asunto(s)
Aberraciones Cromosómicas , Neoplasias Hepáticas/genética , Neoplasias Hepáticas/patología , Linfoma de Células T/genética , Linfoma de Células T/patología , Neoplasias del Bazo/genética , Neoplasias del Bazo/patología , Genes Codificadores de la Cadena beta de los Receptores de Linfocito T , Genes Codificadores de la Cadena gamma de los Receptores de Linfocito T , Humanos , Hibridación Fluorescente in Situ , Masculino , Adulto Joven
20.
Genet Test Mol Biomarkers ; 14(4): 499-504, 2010 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-20642367

RESUMEN

BACKGROUND: Down syndrome (DS) is the most common genetic reason for learning disability and congenital malformations in the human population, occurring with an incidence of 1 in 650-1000 newborns. OBJECTIVE: The aim of this study was to perform chromosome analysis in suspected DS cases with clinical features such as dysmorphism, epicanthic folds, simian crease, and hypotonia, referred to Super Religare Laboratories, Mumbai, India. METHODOLOGY: Cytogenetic analysis of peripheral blood lymphocyte cultures was performed at 550-band level using the modified standard protocol. RESULTS: In this study, male:female sex ratio of DS patients was found to be 1.84:1. Among 1572 cases of DS, standard trisomy 21 in 1400 (89.05%) cases, Robertsonian translocation in 111 (7.06%) cases, and Mosaic form in 28 (1.78%) cases were observed. Three cases of double aneuploidy mos 47,XY,+21/47,XXY and one case of mosaic double aneuploidy mos 47,XY,+21/48,XXY,+21 were noticed. In addition, two novel findings 47,XY,t(14;21)(q13;q22.3)mat,+21 and 45,XX,t(14;21) with DS features are presented. CONCLUSION: In this study, 1572 cases were confirmed as DS, of which maximum cases showed standard trisomy 21. Parental karyotyping and genetic counseling were recommended for the cases confirmed as DS after chromosome analysis.


Asunto(s)
Aneuploidia , Cromosomas Humanos Par 14 , Cromosomas Humanos Par 21 , Síndrome de Down/genética , Translocación Genética , Adolescente , Niño , Preescolar , Análisis Citogenético , Síndrome de Down/diagnóstico , Femenino , Pruebas Genéticas , Genética de Población , Disgenesia Gonadal Mixta/diagnóstico , Disgenesia Gonadal Mixta/genética , Humanos , India , Lactante , Recién Nacido , Masculino , Tamizaje Neonatal
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