A small azide-modified thiazole-based reporter molecule for fluorescence and mass spectrometric detection.

Molecular probes are widely used tools in chemical biology that allow tracing of bioactive metabolites and selective labeling of proteins and other biomacromolecules. A common structural motif for such probes consists of a reporter that can be attached by copper(I)-catalyzed 1,2,3-triazole formation between terminal alkynes and azides to a reactive headgroup. Here we introduce the synthesis and application of the new thiazole-based, azide-tagged reporter 4-(3-azidopropoxy)-5-(4-bromophenyl)-2-(pyridin-2-yl)thiazole for fluorescence, UV and mass spectrometry (MS) detection. This small fluorescent reporter bears a bromine functionalization facilitating the automated data mining of electrospray ionization MS runs by monitoring for its characteristic isotope signature. We demonstrate the universal utility of the reporter for the detection of an alkyne-modified small molecule by LC-MS and for the visualization of a model protein by in-gel fluorescence. The novel probe advantageously compares with commercially available azide-modified fluorophores and a brominated one. The ease of synthesis, small size, stability, and the universal detection possibilities make it an ideal reporter for activity-based protein profiling and functional metabolic profiling.

Cyclometalated ruthenium(II) complexes featuring tridentate click-derived ligands for dye-sensitized solar cell applications.

A series of heteroleptic bis(tridentate) Ru(II) complexes featuring N^C^N-cyclometalating ligands is presented. The 1,2,3-triazole-containing tridentate ligands are readily functionalized with hydrophobic side chains by means of click chemistry and the corresponding cyclometalated Ru(II) complexes are easily synthesized. The performance of these thiocyanate-free complexes in a dye-sensitized solar cell was tested and a power conversion efficiency (PCE) of up to 4.0 % (Jsc =8.1 mA cm(-2) , Voc =0.66 V, FF=0.70) was achieved, while the black dye ((NBu4 )3 [Ru(Htctpy)(NCS)3 ]; Htctpy=2,2':6',2''-terpyridine-4'-carboxylic acid-4,4''-dicarboxylate) showed 5.2 % (Jsc =10.7 mA cm(-2) , Voc =0.69 V, FF=0.69) under comparable conditions. When co-adsorbed with chenodeoxycholic acid, the PCE of the best cyclometalated dye could be improved to 4.5 % (Jsc =9.4 mA cm(-2) , Voc =0.65 V, FF=0.70). The PCEs correlate well with the light-harvesting capabilities of the dyes, while a comparable incident photon-to-current efficiency was achieved with the cyclometalated dye and the black dye. Regeneration appeared to be efficient in the parent dye, despite the high energy of the highest occupied molecular orbital. The device performance was investigated in more detail by electrochemical impedance spectroscopy. Ultimately, a promising Ru(II) sensitizer platform is presented that features a highly functionalizable "click"-derived cyclometalating ligand.

A way to stable, highly emissive fluorubine dyes: tuning the electronic properties of azaderivatives of pentacene by introducing substituted pyrazines.

Pentacene and its derivatives are among the most important examples of π-electron-rich molecules used in organic field effect transistors. The replacement of CH groups by nitrogen atoms opens an elegant way to generate highly electron-deficient molecules, known as oligoazaacenes. We describe the synthesis and spectroscopic properties of two novel derivatives of this family, namely the zwitterionic and quinoidal conjugated forms of dihydro-5,6,7,12,13,14-hexaazapentacene (fluorubine). We outline a powerful strategy to tune the electronic properties of these redox-active azaacenes by the selective introduction of substituted pyrazines. Their acidochromic and solvatochromic behaviour is investigated experimentally and interpreted with the help of theoretical calculations. The simple "exchange" of substituents or protonation is shown to significantly alter the spectroscopic and electronic properties of these remarkably stable π-systems. Their exceptional optical properties, such as high fluorescence quantum yields combined with a redox-active behaviour, make them promising candidates for sensor materials. Additional marked features in the solid state, such as herringbone packing in combination with short π-π distances, will open access to electronic materials.

From byproducts to efficient fluorophores: a route to the synthesis of fluorubines.

The reaction of bis(imidoyl) chlorides of oxalic acid with monoalkyl hydrazines leads to substituted Delta(2)-1,2-diazetines, which are versatile building blocks for ring-transformation reactions. One remarkable product originating from side reactions featured by a strong orange/red fluorescence was confirmed as a novel fluorubine derivative. In continuing our studies to substituted oligoazaacenes, we developed several synthetic entries to build up novel fluorubine derivatives, in which particularly aminobridged bis(quinoxaline)s are the key products for cationic hexaazapentacenes. We would like to discuss the possible formation pathways of these fluorubine derivatives, which exhibit interesting photophysical and chemical properties. The structures of all new derivatives were confirmed by common analytical methods (NMR spectroscopy, CV, UV/Vis, mass spectrometry, elemental analysis, and X-ray structural analysis) and will be discussed on selected examples in more detail.

Evaluation of fluorescent polysaccharide nanoparticles for pH-sensing.

The comprehensive characterization of novel dextran nanoparticles with regard to their suitability as pH-sensors for analytical applications (e.g. in physiology) is described. The nanoparticles are labeled with both a pH-indicator dye (fluorescein isothiocyanate, FITC) and a reference dye (sulforhodamine B acid chloride) as an internal standard. The fluorescence intensity of FITC increases with increasing pH, whereas the signal of the reference dye remains constant. Plotting the ratio of both signals against the pH gives a pK(a) of 6.45, which is appropriate for most of the measurement purposes. Furthermore, the influence of temperature, ionic strength and oxidizing substances on the performance of the fluorophores inside the dextran nanoparticles is examined. These results are compared to the dissolved dyes in order to evaluate if the dextran matrix affects the fluorescence properties of the sensor and the reference dye, and whether or not these nanosensors are suitable for pH-sensing in biological samples.

Soluble PtII-Containing Polymers Based on a 2,6-Bis(1H-1,2,3-triazol-4-yl)-4-ethynylpyridine Ligand.

A soluble PtII-acetylide polymer 6 was prepared in a supramolecular polymerization of a PtII-chloro precursor complex 5, which represents a self-complementary AB-type monomer. This new type of polymer combines the structural features of the common polyplatinynes and cationic PtII-acetylide complexes. Though the photophysical and electrochemical properties of the material still need to be advanced, a versatile and straightforward method for the preparation of soluble, cationic PtII-acetylide polymers with phosphorescent behavior is offered.

Rotational relaxation of linear pi-systems with flexible side chains in solution.

The classical hydrodynamic theory for Brownian rotational motion is applied to model compounds of conjugated polymers with alkoxy side chains of variable length. Theory predicts two rotational relaxation times for these types of molecules with the dipole transition moment parallel to the longest axis whereas experiments reveal only one. The rotational relaxation times and their relative amplitudes were calculated for a wide span of axial ratios of a general ellipsoid. In this way, the range in the axial ratios is obtained such that there is a chance to detect both rates experimentally. Rotational relaxation times of five particular molecules were measured in liquid n-butane. Theoretical calculations using ellipsoid parameters obtained from molecular dynamics calculations compare well with experimental results. Calculation of the rotational relaxation times from the autocorrelation function of the transition dipole moment vector requires significantly greater computational effort.

Pyridylthiazoles: highly luminescent heterocyclic compounds.

Absorption, fluorescence, and fluorescence excitation spectra of two substituted [(5-methyl-2-pyridine-2'-yl-1,3-thiazole-4-yl)oxy]acetic acid and its methyl ester (2,2'-pyridylthiazoles) are studied at various pH values in aqueous solution. The acid exhibits pKa(1)=2.10+/-0.07 and pKa(2)=3.45+/-0.03, whereas the ester pKa=1.93+/-0.03. The protonation site is the pyridyl-nitrogen. When protonated, the cisoid conformer is the most stable; however, the transoid conformer is more stable in the deprotonated form. Fluorescence quantum yields close to unity are found. Large Stokes shift values are explained by the shortening of the inter-ring bond in the excited state. These compounds may be useful for metal sensing and as laser dyes.