Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 65
Filtrar
Mais filtros

Base de dados
País/Região como assunto
Tipo de documento
Intervalo de ano de publicação
1.
Nucleic Acids Res ; 51(20): 10815-10828, 2023 11 10.
Artigo em Inglês | MEDLINE | ID: mdl-37858289

RESUMO

The spliceosome is assembled through a step-wise process of binding and release of its components to and from the pre-mRNA. The remodeling process is facilitated by eight DExD/H-box RNA helicases, some of which have also been implicated in splicing fidelity control. In this study, we unveil a contrasting role for the prototypic splicing proofreader, Prp16, in promoting the utilization of aberrant 5' splice sites and mutated branchpoints. Prp16 is not essential for the branching reaction in wild-type pre-mRNA. However, when a mutation is present at the 5' splice site or if Cwc24 is absent, Prp16 facilitates the reaction and encourages aberrant 5' splice site usage independently of ATP. Prp16 also promotes the utilization of mutated branchpoints while preventing the use of nearby cryptic branch sites. Our study demonstrates that Prp16 can either enhance or impede the utilization of faulty splice sites by stabilizing or destabilizing interactions with other splicing components. Thus, Prp16 exerts dual roles in 5' splice site and branch site selection, via ATP-dependent and ATP-independent activities. Furthermore, we provide evidence that these functions of Prp16 are mediated through the step-one factor Cwc25.


The DExD/H-box protein Prp16 has a well-established role in proofreading the 5' splice site and the branch site of precursor mRNA through ATP hydrolysis to ensure the accuracy of the splicing process. Our research has unveiled an unexpected facet of Prp16's function, as it also promotes aberrant selection of the 5' splice site and the branch site through an ATP-independent activity. Prp16 accomplishes these contrasting functions by interacting with the step-one factor Cwc25. It can stabilize Cwc25 to enhance the branching reaction independently of ATP, or destabilize Cwc25 to inhibit the reaction through its ATPase activity. Prp16 exerts dual roles in splice site selection, employing ATP-dependent and ATP-independent mechanisms to regulate splicing fidelity.


Assuntos
Precursores de RNA , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae , Adenosina Trifosfatases/genética , Adenosina Trifosfatases/metabolismo , Trifosfato de Adenosina/metabolismo , RNA Helicases/genética , RNA Helicases/metabolismo , Precursores de RNA/genética , Precursores de RNA/metabolismo , Sítios de Splice de RNA , Splicing de RNA , Fatores de Processamento de RNA/genética , Fatores de Processamento de RNA/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Spliceossomos/genética , Spliceossomos/metabolismo
2.
Nature ; 617(7962): 680-681, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-37165217
3.
Nucleic Acids Res ; 49(17): 9965-9977, 2021 09 27.
Artigo em Inglês | MEDLINE | ID: mdl-34387687

RESUMO

Splicing of pre-mRNA is initiated by binding of U1 to the 5' splice site and of Msl5-Mud2 heterodimer to the branch site (BS). Subsequent binding of U2 displaces Msl5-Mud2 from the BS to form the prespliceosome, a step governing branchpoint selection and hence 3' splice site choice, and linking splicing to myelodysplasia and many cancers in human. Two DEAD-box proteins, Prp5 and Sub2, are required for this step, but neither is stably associated with the pre-mRNA during the reaction. Using BS-mutated ACT1 pre-mRNA, we previously identified a splicing intermediate complex, FIC, which contains U2 and Prp5, but cannot bind the tri-snRNP. We show here that Msl5 remains associated with the upstream cryptic branch site (CBS) in the FIC, with U2 binding a few bases downstream of the BS. U2 mutants that restore U2-BS base pairing enable dissociation of Prp5 and allows splicing to proceed. The CBS is required for splicing rescue by compensatory U2 mutants, and for formation of FIC, demonstrating a role for Msl5 in directing U2 to the BS, and of U2-BS base pairing for release of Prp5 and Msl5-Mud2 to form the prespliceosome. Our results provide insights into how the prespliceosome may form in normal splicing reaction.


Assuntos
Splicing de RNA/genética , RNA Mensageiro/genética , Ribonucleoproteína Nuclear Pequena U2/metabolismo , Spliceossomos/genética , Actinas/genética , Adenosina Trifosfatases/genética , RNA Helicases DEAD-box/genética , Humanos , Fatores de Processamento de RNA/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Fator de Processamento U2AF/metabolismo
4.
Genes Dev ; 29(1): 81-93, 2015 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-25561497

RESUMO

The DEAD-box RNA helicase Prp5 is required for the formation of the prespliceosome through an ATP-dependent function to remodel U2 small nuclear ribonucleoprotein particles (snRNPs) and an ATP-independent function of unknown mechanism. Prp5 has also been implicated in proofreading the branch site sequence, but the molecular mechanism has not been well characterized. Using actin precursor mRNA (pre-mRNA) carrying branch site mutations, we identified a Prp5-containing prespliceosome with Prp5 directly bound to U2 small nuclear RNA (snRNA). Prp5 is in contact with U2 in regions on and near the branchpoint-interacting stem-loop (BSL), suggesting that Prp5 may function in stabilizing the BSL. Regardless of its ATPase activity, Prp5 mutants that suppress branch site mutations associate with the spliceosome less tightly and allow more tri-snRNP binding for the reaction to proceed. Our results suggest a novel mechanism for how Prp5 functions in prespliceosome formation and proofreading of the branch site sequence. Prp5 binds to the spliceosome in association with U2 by interacting with the BSL and is released upon the base-pairing of U2 with the branch site to allow the recruitment of the tri-snRNP. Mutations impairing U2-branch site base-pairing retard Prp5 release and impede tri-snRNP association. Prp5 mutations that destabilize the Prp5-U2 interaction suppress branch site mutations by allowing progression of the pathway.


Assuntos
RNA Helicases DEAD-box/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Spliceossomos/metabolismo , Proteínas de Ciclo Celular/genética , Proteínas de Ciclo Celular/metabolismo , Quinase do Ponto de Checagem 2/genética , Quinase do Ponto de Checagem 2/metabolismo , RNA Helicases DEAD-box/genética , Mutação , Ligação Proteica , Precursores de RNA/metabolismo , Splicing de RNA , Ribonucleoproteínas Nucleares Pequenas/metabolismo , Proteínas de Saccharomyces cerevisiae/genética
5.
Nucleic Acids Res ; 47(19): 10327-10339, 2019 11 04.
Artigo em Inglês | MEDLINE | ID: mdl-31504764

RESUMO

The essential splicing factor Cwc24 contains a zinc-finger (ZF) domain required for its function in splicing. Cwc24 binds over the 5' splice site after the spliceosome is activated, and its binding prior to Prp2-mediated spliceosome remodeling is important for proper interactions of U5 and U6 with the 5' splice site sequence and selection of the 5' splice site. Here, we show that Cwc24 transiently interacts with the 5' splice site in formation of the functional RNA catalytic core during spliceosome remodeling, and the ZF-motif is required for specific interaction of Cwc24 with the 5' splice site. Deletion of the ZF domain or mutation of the conserved ZF residues greatly weakened the association of Cwc24 with the spliceosome, and lowered the affinity and specificity of its interaction with the 5' splice site, resulting in atypical interactions of U5, U6 and Prp8 with the 5' splice site, and aberrant cleavage at the 5' splice site. Our results reveal a crucial role of the Cwc24 ZF-motif for defining 5' splice site selection in the first splicing step.


Assuntos
Proteínas de Ligação a DNA/genética , Proteínas com Motivo de Reconhecimento de RNA/genética , Fatores de Processamento de RNA/genética , Splicing de RNA/genética , Ribonucleoproteína Nuclear Pequena U4-U6/genética , Ribonucleoproteína Nuclear Pequena U5/genética , Proteínas de Saccharomyces cerevisiae/genética , Spliceossomos/genética , Sequência de Bases/genética , Domínio Catalítico/genética , Humanos , Íntrons/genética , Mutação/genética , Sítios de Splice de RNA/genética , RNA Nuclear Pequeno/genética , Saccharomyces cerevisiae/genética , Dedos de Zinco/genética
6.
Nucleic Acids Res ; 47(2): 899-910, 2019 01 25.
Artigo em Inglês | MEDLINE | ID: mdl-30395327

RESUMO

The spliceosome is assembled via sequential interactions of pre-mRNA with five small nuclear RNAs and many proteins. Recent determination of cryo-EM structures for several spliceosomal complexes has provided deep insights into interactions between spliceosomal components and structural changes of the spliceosome between steps, but information on how the proteins interact with pre-mRNA to mediate the reaction is scarce. By systematic analysis of proteins interacting with the splice sites (SSs), we have identified many previously unknown interactions of spliceosomal components with the pre-mRNA. Prp8 directly binds over the 5'SS and the branch site (BS) for the first catalytic step, and the 5'SS and 3'SS for the second step. Switching the Prp8 interaction from the BS to the 3'SS requires Slu7, which interacts dynamically with pre-mRNA first, and then interacts stably with the 3'-exon after Prp16-mediated spliceosome remodeling. Our results suggest that Prp8 plays a key role in positioning the 5'SS and 3'SS, facilitated by Slu7 through interactions with Prp8 and substrate RNA to advance exon ligation. We also provide evidence that Prp16 first docks on the intron 3' tail, then translocates in the 3' to 5' direction on remodeling the spliceosome.


Assuntos
Precursores de RNA/metabolismo , Fatores de Processamento de RNA/metabolismo , Splicing de RNA , RNA Mensageiro/metabolismo , Sítios de Ligação , Biocatálise , Éxons , Proteínas Fúngicas/metabolismo , Íntrons , Modelos Genéticos , Sítios de Splice de RNA , Spliceossomos/metabolismo
7.
Nucleic Acids Res ; 46(7): 3764-3773, 2018 04 20.
Artigo em Inglês | MEDLINE | ID: mdl-29390077

RESUMO

Cwc23 is a member of the J protein family, and has been shown to interact with Ntr1, a scaffold protein that interacts with Ntr2 and Prp43 to form the NTR complex that mediates spliceosome disassembly. We show that Cwc23 is also an intrinsic component of the NTR complex, and that it interacts with the carboxyl terminus of Ntr1. Metabolic depletion of Cwc23 concurrently depleted Ntr1 and Ntr2, suggesting a role for Cwc23 in stabilizing these two proteins. Ntr1, Ntr2 and Cwc23 are stoichiometrically balanced, and form a stable heterotrimer. Depletion of Cwc23 from splicing extracts using antibodies resulted in depletion of all three proteins and accumulation of intron-lariat in the splicing reaction. Cwc23 is not required for disassembly of intron-lariat spliceosome (ILS), but facilitates disassembly of spliceosome intermediates after the actions of Prp2 and Prp16 by stabilizing the association of Ntr1 with the spliceosome. Cwc23 has a more limited effect on the association of Ntr1 with the ILS. Our data suggest that Cwc23 is important for maintaining the levels of Ntr1 and Ntr2, and that it also plays a regulatory role in targeting spliceosome intermediates for disassembly.


Assuntos
Chaperonas Moleculares/genética , Proteínas de Saccharomyces cerevisiae/genética , Spliceossomos/genética , Adenosina Trifosfatases/genética , RNA Helicases DEAD-box/genética , Íntrons/genética , Chaperonas Moleculares/antagonistas & inibidores , Ligação Proteica , RNA Helicases/genética , Splicing de RNA/genética , Fatores de Processamento de RNA/genética , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/antagonistas & inibidores
8.
RNA ; 23(4): 546-556, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28057857

RESUMO

Splicing of precursor mRNA occurs via two consecutive steps of transesterification reaction; both require ATP and several proteins. Despite the energy requirement in the catalytic phase, incubation of the purified spliceosome under proper ionic conditions can elicit competitive reversible transesterification, debranching, and spliced-exon-reopening reactions without the necessity for ATP or other factors, suggesting that small changes in the conformational state of the spliceosome can lead to disparate chemical consequences for the substrate. We show here that Cwc25 plays a central role in modulating the conformational state of the catalytic spliceosome during normal splicing reactions. Cwc25 binds tightly to the spliceosome after the reaction and is then removed from the spliceosome, which normally requires DExD/H-box protein Prp16 and ATP hydrolysis, to allow the occurrence of the second reaction. When deprived of Cwc25, the purified first-step spliceosome catalyzes both forward and reverse splicing reactions under normal splicing conditions without requiring energy. Both reactions are inhibited when Cwc25 is added back, presumably due to the stabilization of first-step conformation. Prp16 is dispensable for the second reaction when splicing is carried out under conditions that destabilize Cwc25. We also show that the purified precatalytic spliceosome can catalyze two steps of the reaction at a low efficiency without requiring Cwc25, Slu7, or Prp18 when incubated under proper conditions. Our study reveals conformational modulation of the spliceosome by Cwc25 and Prp16 in stabilization and destabilization of first-step conformation, respectively, to facilitate the splicing process.


Assuntos
Adenosina Trifosfatases/genética , Regulação Fúngica da Expressão Gênica , RNA Helicases/genética , Precursores de RNA/genética , Fatores de Processamento de RNA/genética , Splicing de RNA , RNA Fúngico/genética , Proteínas de Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/genética , Adenosina Trifosfatases/metabolismo , Trifosfato de Adenosina/metabolismo , Biocatálise , Hidrólise , Modelos Biológicos , Conformação Proteica , RNA Helicases/metabolismo , Precursores de RNA/metabolismo , Fatores de Processamento de RNA/metabolismo , RNA Fúngico/metabolismo , Ribonucleoproteína Nuclear Pequena U5/genética , Ribonucleoproteína Nuclear Pequena U5/metabolismo , Ribonucleoproteínas Nucleares Pequenas/genética , Ribonucleoproteínas Nucleares Pequenas/metabolismo , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Spliceossomos , Termodinâmica
9.
Occup Environ Med ; 74(1): 24-29, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27581706

RESUMO

OBJECTIVES: Exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) has inconsistently been associated with a decreased sex ratio of the offspring (number of male births divided by total births). We conducted a study among men and women who were employed in a New Zealand phenoxy herbicide production plant between 1969 and 1984, to study their offspring sex ratio in relation to their back-calculated TCDD serum concentrations determined in 2007/2008. METHODS: A total of 127 men and 21 women reported that 355 children were conceived after starting employment at the plant. The association between their lipid-standardised TCDD serum concentrations back-calculated to the time of their offspring's birth and the probability of a male birth was estimated through logistic regression, adjusting for the age of the exposed parent at birth, current body mass index and smoking. RESULTS: The overall sex ratio was 0.55 (197 boys, 158 girls). For fathers with serum TCDD concentrations ≥20 pg/g lipid at time of birth, the sex ratio was 0.47 (OR 0.49; 95% CI 0.30 to 0.79). The probability of a male birth decreased with higher paternal serum TCDD at time of birth (<4; 4-20; 20-100; ≥100 pg/g lipid), with ORs of 1.00 (reference); 1.00 (95% CI 0.50 to 2.02); 0.52 (95% CI 0.29 to 0.92); 0.45 (95% CI 0.23 to 0.89), p trend 0.007. For exposed mothers, the sex ratio was not reduced. CONCLUSIONS: This study indicates that paternal serum TCDD concentrations in excess of an estimated 20 pg/g lipid at time of conception are associated with a reduced sex ratio.


Assuntos
Dioxinas/efeitos adversos , Exposição Ocupacional/efeitos adversos , Exposição Paterna/efeitos adversos , Razão de Masculinidade , Adulto , Índice de Massa Corporal , Estudos de Coortes , Dioxinas/sangue , Feminino , Herbicidas/efeitos adversos , Humanos , Indústrias , Agências Internacionais , Entrevistas como Assunto , Modelos Logísticos , Masculino , Pessoa de Meia-Idade , Nova Zelândia , Gravidez , Distribuição por Sexo , Adulto Jovem
10.
Nucleic Acids Res ; 42(19): 12261-71, 2014 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-25294830

RESUMO

The Prp19-associated complex is required for spliceosome activation by stabilizing the binding of U5 and U6 on the spliceosome after the release of U4. The complex comprises at least eight proteins, among which Ntc90 and Ntc77 contain multiple tetratricopeptide repeat (TPR) elements. We have previously shown that Ntc90 is not involved in spliceosome activation, but is required for the recruitment of essential first-step factor Yju2 to the spliceosome. We demonstrate here that Ntc77 has dual functions in both spliceosome activation and the first catalytic step in recruiting Yju2. We have identified an amino-terminal region of Ntc77, which encompasses the N-terminal domain and the first three TPR motifs, dispensable for spliceosome activation but required for stable interaction of Yju2 with the spliceosome. Deletion of this region had no severe effect on the integrity of the NTC, binding of NTC to the spliceosome or spliceosome activation, but impaired splicing and exhibited a dominant-negative growth phenotype. Our data reveal functional roles of Ntc77 in both spliceosome activation and the first catalytic step, and distinct structural domains of Ntc77 required for these two steps.


Assuntos
Proteínas de Ciclo Celular/química , Proteínas de Saccharomyces cerevisiae/química , Spliceossomos/metabolismo , Biocatálise , Proteínas de Ciclo Celular/metabolismo , Proteínas de Ciclo Celular/fisiologia , RNA Helicases DEAD-box/metabolismo , Proteínas Nucleares/metabolismo , Estrutura Terciária de Proteína , Fatores de Processamento de RNA , Proteínas de Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/fisiologia
11.
Int Arch Occup Environ Health ; 89(2): 307-18, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26194660

RESUMO

PURPOSE: To quantify serum concentrations of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and dioxin-like compounds in former phenoxy herbicide production plant workers and firefighters, 20 years after 2,4,5-T production ceased. METHODS: Of 1025 workers employed any time during 1969-1984, 430 were randomly selected and invited to take part in a morbidity survey and provide a blood sample; 244 (57%) participated. Firefighters stationed in close proximity of the plant and/or engaged in call-outs to the plant between 1962 and 1987 also participated (39 of 70 invited). Reported here are the serum concentrations of TCDD and other chlorinated dibenzo-dioxins, dibenzofurans, and polychlorinated biphenyls (PCBs). Determinants of the serum concentrations were assessed using linear regression. RESULTS: The 60 men who had worked in the phenoxy/TCP production area had a mean TCDD serum concentration of 19.1 pg/g lipid, three times the mean concentration of the 141 men and 43 women employed in other parts of the plant (6.3 and 6.0 pg/g respectively), and more than 10 times the mean for the firefighters (1.6 pg/g). Duration of employment in phenoxy herbicide synthesis, maintenance work, and work as a boilerman, chemist, and packer were associated with increased serum concentrations of TCDD and 1,2,3,4,7-pentachlorodibenzo-p-dioxin (PeCDD). Employment as a boilerman was also associated with elevated serum concentrations of PCBs. CONCLUSIONS: Occupations in the plant associated with phenoxy herbicide synthesis had elevated levels of TCDD and PeCDD. Most other people working within the plant, and the local firefighters, had serum concentrations of dioxin-like compounds comparable to those of the general population.


Assuntos
Benzofuranos/sangue , Indústria Química , Bombeiros , Exposição Ocupacional , Bifenilos Policlorados/sangue , Dibenzodioxinas Policloradas/sangue , Ácido 2,4,5-Triclorofenoxiacético/síntese química , Adulto , Idoso , Idoso de 80 Anos ou mais , Poluentes Ocupacionais do Ar/sangue , Dibenzofuranos Policlorados , Feminino , Herbicidas/síntese química , Humanos , Masculino , Pessoa de Meia-Idade , Nova Zelândia , Ocupações , Dibenzodioxinas Policloradas/análogos & derivados , Fatores de Tempo
12.
RNA ; 19(7): 971-81, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23681507

RESUMO

Splicing of nuclear pre-mRNA occurs via two steps of the transesterification reaction, forming a lariat intermediate and product. The reactions are catalyzed by the spliceosome, a large ribonucleoprotein complex composed of five small nuclear RNAs and numerous protein factors. The spliceosome shares a similar catalytic core structure with that of fungal group II introns, which can self-splice using the same chemical mechanism. Like group II introns, both catalytic steps of pre-mRNA splicing can efficiently reverse on the affinity-purified spliceosome. The spliceosome also catalyzes a hydrolytic spliced-exon reopening reaction as observed in group II introns, indicating a strong link in their evolutionary relationship. We show here that, by arresting splicing after the first catalytic step, the purified spliceosome can catalyze debranching of lariat-intron-exon 2. The debranching reaction, although not observed in group II introns, has similar monovalent cation preferences as those for splicing catalysis of group II introns. The debranching reaction is in competition with the reverse Step 1 reaction influenced by the ionic environment and the structure of components binding near the catalytic center, suggesting that the catalytic center of the spliceosome can switch between different conformations to direct different chemical reactions.


Assuntos
Splicing de RNA , RNA Fúngico/química , Spliceossomos/química , Adenosina Trifosfatases/química , Adenosina Trifosfatases/genética , Esterificação , Éxons , Íntrons , Magnésio/química , Mutação , Proteínas Nucleares/química , Proteínas Nucleares/genética , Conformação de Ácido Nucleico , Cloreto de Potássio/química , Clivagem do RNA , RNA Helicases/química , RNA Helicases/genética , RNA Nucleotidiltransferases/química , RNA Nucleotidiltransferases/genética , Fatores de Processamento de RNA , RNA Fúngico/genética , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Spliceossomos/genética
13.
J Biomed Sci ; 22: 54, 2015 Jul 16.
Artigo em Inglês | MEDLINE | ID: mdl-26173448

RESUMO

Splicing of precursor mRNA takes place via two consecutive steps of transesterification catalyzed by a large ribonucleoprotein complex called the spliceosome. The spliceosome is assembled through ordered binding to the pre-mRNA of five small nuclear RNAs and numerous protein factors, and is disassembled after completion of the reaction to recycle all components. Throughout the splicing cycle, the spliceosome changes its structure, rearranging RNA-RNA, RNA-protein and protein-protein interactions, for positioning and repositioning of splice sites. DExD/H-box RNA helicases play important roles in mediating structural changes of the spliceosome by unwinding of RNA duplexes or disrupting RNA-protein interactions. DExD/H-box proteins are also implicated in the fidelity control of the splicing process at various steps. This review summarizes the functional roles of DExD/H-box proteins in pre-mRNA splicing according to studies conducted mostly in yeast and will discuss the concept of the complicated splicing reaction based on recent findings.


Assuntos
RNA Helicases/genética , Precursores de RNA/genética , Splicing de RNA/genética , Spliceossomos/genética , Humanos , Saccharomyces cerevisiae/genética
14.
RNA ; 17(1): 145-54, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21098140

RESUMO

The assembly of the spliceosome involves dynamic rearrangements of interactions between snRNAs, protein components, and the pre-mRNA substrate. DExD/H-box ATPases are required to mediate structural changes of the spliceosome, utilizing the energy of ATP hydrolysis. Two DExD/H-box ATPases are required for the catalytic steps of the splicing pathway, Prp2 for the first step and Prp16 for the second step, both belonging to the DEAH subgroup of the protein family. The detailed mechanism of their action was not well understood until recently, when Prp2 was shown to be required for the release of U2 components SF3a and SF3b, presumably to allow the binding of Cwc25 to promote the first transesterification reaction. We show here that Cwc25 and Yju2 are released after the reaction in Prp16- and ATP-dependent manners, possibly to allow for the binding of Prp22, Prp18, and Slu7 to promote the second catalytic reaction. The binding of Cwc25 to the spliceosome is destabilized by mutations at the branchpoint sequence, suggesting that Cwc25 may bind to the branch site. We also show that Prp16 has an ATP-independent role in the first catalytic step, in addition to its known role in the second step. In the absence of ATP, Prp16 stabilizes the binding of Cwc25 to the spliceosome formed with branchpoint mutated pre-mRNAs to facilitate their splicing. Our results uncovered novel functions of Prp16 in both catalytic steps, and provide mechanistic insights into splicing catalysis.


Assuntos
Adenosina Trifosfatases/metabolismo , RNA Helicases/metabolismo , Precursores de RNA/genética , Splicing de RNA , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/genética , Spliceossomos/fisiologia , Adenosina Trifosfatases/genética , Trifosfato de Adenosina/metabolismo , Catálise , Imunoprecipitação , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , RNA Helicases/genética , Fatores de Processamento de RNA , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética
15.
Cancer Causes Control ; 24(1): 135-52, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23179663

RESUMO

PURPOSE: To investigate whether the relationships between established risk factors and breast cancer risk differ between three ethnic groups in New Zealand, namely Maori, Pacific, and non-Maori/non-Pacific women. METHODS: The study is a multi-ethnic, age-, and ethnicity-matched population-based case-control study of breast cancer in women. Women with a primary, invasive breast cancer registered on the New Zealand Cancer Registry between 1 April 2005 and 30 April 2006, and Maori or Pacific women diagnosed to 30 April 2007 were eligible. Control women were identified from the New Zealand Electoral Roll, stratified by ethnicity, then frequency matched on age to the cases. Logistic regression was used to estimate odds ratios (OR) and 95 % confidence intervals (CI) between exposures and breast cancer risk in three ethnic groups separately. Likelihood ratio tests were used to test for modification of the effects by ethnicity. Post-stratification weighting of the controls was used to account for differential non-response by deprivation category. RESULTS: The study comprised 1,799 cases (302 Maori, 70 Pacific, 1,427 non-Maori/non-Pacific) and 2,543 controls (746 Maori, 194 Pacific, 1,603 non-Maori/non-Pacific), based on self-identified ethnicity. Maori women were more likely to have ER and PR positive breast cancer compared to other ethnicities. There were marked differences in exposure prevalence between ethnicities and some differing patterns of risk factors for breast cancer between the three main ethnic groups. Of interest was the strong relationship between number of children and lower breast cancer risk in Pacific women (OR for 4 or more vs. 1 child OR 0.13, 95 % CI 0.05-0.35) and a higher risk of breast cancer associated with smoking (OR 1.76, 95 % CI 1.25-2.48) and binge drinking (5 or more vs. 1-2 drinks per occasion, OR 1.55, 95 % CI 1.07-2.26) in Maori women. Some of the documented results were attenuated following post-stratification weighting. CONCLUSIONS: The findings of this study need to be interpreted with caution, given the possibility of selection bias due to low response rates among some groups of women. Reducing the burden of breast cancer in New Zealand is likely to require different approaches for different ethnic groups.


Assuntos
Neoplasias da Mama/etnologia , Neoplasias da Mama/etiologia , Carcinoma/etnologia , Carcinoma/etiologia , Adulto , Idoso , Algoritmos , Neoplasias da Mama/epidemiologia , Carcinoma/epidemiologia , Estudos de Casos e Controles , Etnicidade , Feminino , Humanos , Pessoa de Meia-Idade , Nova Zelândia/epidemiologia , Projetos Piloto , Prevalência , Sistema de Registros/estatística & dados numéricos , Fatores de Risco
16.
Methods Mol Biol ; 2666: 193-211, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37166667

RESUMO

The spliceosome is a dynamic ribonucleoprotein particle and is assembled via sequential binding of five snRNAs and numerous protein factors. To understand the molecular mechanism of the splicing reaction, it is necessary to dissect the spliceosome pathway and isolate spliceosome intermediates in various stages of the pathway for biochemical and structural analysis. Here, we describe protocols for preparing intron-containing transcripts, cell-free splicing extracts, and in vitro splicing reactions, as well as procedures to arrest the spliceosome at different stages of the pathway for characterization of specific splicing complexes from the budding yeast Saccharomyces cerevisiae. Methods for arresting spliceosomes at specific stages include depletion with antibodies against factors required for specific steps of the pathway, use of extracts prepared from temperature-sensitive mutants, use of dominant negative mutants of DExD/H-box proteins, and use of mutant substrates.


Assuntos
Proteínas de Saccharomyces cerevisiae , Spliceossomos , Spliceossomos/genética , Spliceossomos/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Precursores de RNA/genética , Precursores de RNA/metabolismo , RNA Helicases DEAD-box/metabolismo , Splicing de RNA , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Fatores de Processamento de RNA/genética , Fatores de Processamento de RNA/metabolismo
17.
J Curr Glaucoma Pract ; 17(3): 149-156, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37920377

RESUMO

Purpose: To evaluate the impact of a nurse-led glaucoma education program on patient knowledge and compliance levels in an Asian population. Materials and Methods: A 1-year prospective case series involving 69 adult glaucoma patients. Each patient attended a standardized nurse-led glaucoma education session. A questionnaire was administered by a single nurse-clinician and analyzed at three time points (preeducation for baseline, immediately posteducation, and at the 1-year follow-up) to evaluate for associations with patient knowledge and compliance motivation levels. Results: A total of 64 patients were included in the final analysis. Patients with higher educational qualifications or who were employed had better baseline knowledge of glaucoma. Younger patients had higher baseline compliance motivation levels. Immediately posteducation, both median patient knowledge score and compliance motivation levels had a statistically significant increase. Patients on more glaucoma eye drops had greater immediate improvement in confidence in eye drop application. Patients with more positive Humphrey visual field mean deviation values had a greater immediate improvement in confidence in their understanding of glaucoma. A total of 34 patients were readministered the questionnaire at the 1-year time point. Median score for patient knowledge was highest at this point. Employed patients demonstrated better patient knowledge at baseline and at 1-year time point compared to unemployed patients. Unemployed patients experienced a significant improvement in scores from baseline to immediately posteducation, but improvement from immediately posteducation to the 1-year time point was insignificant was insignificant. Conclusion: Our study has examined the effectiveness of a nurse-led glaucoma education program in an Asian population, demonstrating improvement in both patient knowledge and compliance motivation levels up to 1 year after intervention. How to cite this article: Sng JJ, Ang BCH, Soo Hoo WC, et al. The Effectiveness of a Nurse-led Glaucoma Education on Patient Knowledge and Compliance Motivation Levels: A 1-year Prospective Case Series. J Curr Glaucoma Pract 2023;17(3):149-156.

18.
RNA ; 21(4): 586-7, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25780150
19.
Ergonomics ; 55(3): 327-42, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22409170

RESUMO

The prevalence of low back symptoms (LBS) in many working populations is high and differences in prevalence between genders are inconsistent. However, gender-specific risk factors for LBS have seldom been examined. Hence, the aim of the present study was to indicate gender-specific LBS risk factors. A sample of 3003 people was interviewed by telephone to get information about current workplace exposure and LBS. The risk of LBS for the whole population increased with work in awkward/tiring positions (OR 1.37, 95% CI 1.12-1.68) and very/extremely stressful jobs (OR 1.46, 95% CI 1.05-2.03). None of the explanatory variables were significantly associated with LBS for males but working in awkward/tiring positions (OR 1.51, 95% CI 1.04-2.20), dissatisfaction with contact and cooperation with management (OR 1.68, 95% CI 1.02-2.78) and finding their job to be very/extremely stressful (OR 2.27, 95% CI 1.46-3.52) were significantly associated with LBS for females. Interventions to reduce LBS in workplaces should focus on reducing working in awkward/tiring positions, improving contact and cooperation with management, and reducing stressful jobs, especially amongst females. PRACTITIONER SUMMARY: Strategies to prevent or reduce LBS should focus on reducing exposure to awkward or tiring positions at work, improving contact and cooperation with management, and reducing stressful jobs, especially for females.


Assuntos
Dor Lombar/etiologia , Dor Lombar/fisiopatologia , Exposição Ocupacional , Adulto , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Nova Zelândia , Medição de Risco , Inquéritos e Questionários , Adulto Jovem
20.
Environ Int ; 163: 107206, 2022 05.
Artigo em Inglês | MEDLINE | ID: mdl-35395578

RESUMO

This study aimed to assess pesticide exposure and its determinants in children aged 5-14 years. Urine samples (n = 953) were collected from 501 participating children living in urban areas (participant n = 300), rural areas but not on a farm (n = 76), and living on a farm (n = 125). The majority provided two samples, one in the high and one in the low spraying season. Information on diet, lifestyle, and demographic factors was collected by questionnaire. Urine was analysed for 20 pesticide biomarkers by GC-MS/MS and LC-MS/MS. Nine analytes were detected in > 80% of samples, including six organophosphate insecticide metabolites (DMP, DMTP, DEP, DETP, TCPy, PNP), two pyrethroid insecticide metabolites (3-PBA, trans-DCCA), and one herbicide (2,4-D). The highest concentration was measured for TCPy (median 13 µg/g creatinine), a metabolite of chlorpyrifos and triclopyr, followed by DMP (11 µg/g) and DMTP (3.7 µg/g). Urine metabolite levels were generally similar or low compared to those reported for other countries, while relatively high for TCPy and pyrethroid metabolites. Living on a farm was associated with higher TCPy levels during the high spray season. Living in rural areas, dog ownership and in-home pest control were associated with higher levels of pyrethroid metabolites. Urinary concentrations of several pesticide metabolites were higher during the low spraying season, possibly due to consumption of imported fruits and vegetables. Organic fruit consumption was not associated with lower urine concentrations, but consumption of organic food other than fruit or vegetables was associated with lower concentrations of TCPy in the high spray season. In conclusion, compared to other countries such as the U.S., New Zealand children had relatively high exposures to chlorpyrifos/triclopyr and pyrethroids. Factors associated with exposure included age, season, area of residence, diet, in-home pest control, and pets.


Assuntos
Clorpirifos , Inseticidas , Praguicidas , Piretrinas , Animais , Biomarcadores , Criança , Clorpirifos/urina , Cromatografia Líquida , Cães , Exposição Ambiental/análise , Humanos , Inseticidas/urina , Nova Zelândia , Praguicidas/análise , Piretrinas/urina , Espectrometria de Massas em Tandem
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA