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2.
Biochim Biophys Acta ; 537(1): 86-99, 1978 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-214140

RESUMO

1. A simplified procedure for the preparation of highly purified human superoxide dismutase from erythrocytes was developed which avoided extremes of pH and ionic strength and the use of organic solvents; the properties of human and bovine proteins, prepared by the method, were compared. 2. Using the two dimensional electrophoretic procedure of O'Farrell, the human superoxide dismutase was found to consist of a single type of polypeptide. 3. The human protein was found to have a total of eight half-cystine residues per mole of protein, compared to six such residues for the bovine protein. The human protein has two sulfhydryl groups which are reactive toward mercurials when dissolved in 1M guanidine-hydrochloride and approximately 3 reactive sulfhydrls when the protein is dissolved in 6 M guanidine hydrochloride. The distribution of the eight sulfur atoms appears to consist of four involved in disulfide linkages, two deeply buried within the molecule and unreactive except under strongly denaturing conditions, and two which are reactive under mildly denaturing conditions. No zero-valent sulfur was found. 4. The visible optical absorption, the visible circular dichroism, and the electron paramagnetic resonance spectra are essentially identical with those of the bovine protein. No unusual absorbance was found at 330 nm. The near ultraviolet spectrum is different from that of the bovine protein, and this appears to be due to differing amino acid compositions. 5. Two fractions of superoxide dismutase activity were observed during chromatography of partially purified solutions on diethylaminoethyl-cellulose. The minor, less mobile form, was found to revert to the less mobile species on aging; the reverse process was not observed to occur. The minor component was found to contain equimolar amounts of Zn and Cu and to have a specific dismutase activity somewhat higher than that of the purified major fraction.


Assuntos
Eritrócitos/enzimologia , Superóxido Dismutase , Aminoácidos/análise , Dicroísmo Circular , Cobre/análise , Dissulfetos/análise , Espectroscopia de Ressonância de Spin Eletrônica , Humanos , Peso Molecular , Conformação Proteica , Espectrofotometria , Superóxido Dismutase/sangue , Superóxido Dismutase/isolamento & purificação , Zinco/análise
3.
Biochim Biophys Acta ; 537(1): 100-9, 1978 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-718975

RESUMO

1. During purification of human superoxide dismutase by the McCord-Fridovich procedure (McCord, J.M. and Fridovich, I. (1969) J. Biol. Chem. 244, 6049--6055) the "extra" sulfhydryl groups react with a variety of sulfur containing compounds including zero-valent sulfur to yield several dismutase fractions containing excess sulfur atoms and having a unique absorption band in the region of 325 nm. This is shown to be artefact of the purification procedure. 2. Cysteine trisulfide and glutathione polysulfide were found to react with native human superoxide dismutase to yield derivatives having no reactive sulfhydryl groups and possessing spectral properties similar to the various fractions obtainable from the above purification procedure. A structure of the type protein-CH2-S-(S)n R is proposed to account for the results. The value of n is variable, and the additional sulfur reactive toward thiol reagents is thought to be due to persulfides (R = H). The 325 nm band is probably due to a n leads to sigma ss transition associated with a strained S-S bound.


Assuntos
Eritrócitos/enzimologia , Superóxido Dismutase , Clorofórmio , Dicroísmo Circular , Cobre/análise , Dissulfetos/análise , Etanol , Hemoglobinas/isolamento & purificação , Humanos , Conformação Proteica , Espectrofotometria , Compostos de Sulfidrila , Superóxido Dismutase/sangue , Superóxido Dismutase/isolamento & purificação , Zinco/análise
4.
Biochim Biophys Acta ; 412(1): 26-38, 1975 Nov 18.
Artigo em Inglês | MEDLINE | ID: mdl-82

RESUMO

1. Holo-superoxide dismutase from bovine erythrocytes has been shown to undergo a reversible structural modification in the pH 3-5 range. 2. The spectral alterations observed on changing from neutrality to pH 2 were: a slight attenuation of the 680 nm absorbance; the loss of the 450 nm shoulder, apparent in the optical spectrum of the native protein; and a new band appeared at 330 nm. The circular dichroism at 600 nm was essentially lost while a weak negative band appeared at approx. 380 nm and a positive band at 310 nm. 3. The EPR spectrum was also modified on changing from the native to the low pH form: A parallel increased from approximately 130 to approximately 150 G, g parallel remained unchanged at approximately 2.27, and gm decreased from approximately 2.09 to approximately 2.08. The apparent linewidth remained essentially constant. 4. High resolution (220 MHz) PMR spectra of holo- and apoproteins revealed that the metals influence the three-dimensional structure of the protein. 5. PMR studies indicated that at pH 3 the apoprotein existed almost entirely in a random coil form and that it assumed a compact well-ordered structure on returning to neutral pH. The holoprotein maintained a compact, apparently dimeric, structure even at pH 3.


Assuntos
Apoenzimas , Apoproteínas , Concentração de Íons de Hidrogênio , Superóxido Dismutase , Animais , Apoenzimas/sangue , Sítios de Ligação , Bovinos , Dicroísmo Circular , Espectroscopia de Ressonância de Spin Eletrônica , Eritrócitos/enzimologia , Espectroscopia de Ressonância Magnética , Ligação Proteica , Conformação Proteica , Espectrofotometria , Espectrofotometria Ultravioleta , Superóxido Dismutase/sangue
5.
Biochim Biophys Acta ; 400(2): 439-50, 1975 Aug 19.
Artigo em Inglês | MEDLINE | ID: mdl-169909

RESUMO

1. We have developed a procedure for preparing derivatives of bovine superoxide dismutase in which primarily the Cu binding sites are occupied by Cu2+ (2 Cu2+-) and in which both the Zn and Cu binding sites are occupied by Cu2+ (4 Cu2+-). 2. The 2 Cu2+ protein shows approximately one-half the superoxide dismutase activity of an equivalent amount of native protein. A two-fold enhancement of the activity of 2 Cu2+-dismutase was observed upon occupation of the Zn sites either with Zn2+ or Cu2+. 3. The electron paramagnetic resonance spectrum of 4 Cu2+ protein was recorded over the temperature range 5-100 degrees K and the results suggest an antiferro-magnetic interaction between Cu2+ in the Zn site and Cu2+ in the Cu site having a coupling constant of approx. 52 cm-1. 4. The binuclear Cu2+ complex was found to accept only one electron from ferrocyanide. 5. One-half the total Cu+ of dithionite reduced 4 Cu+ protein was found to react rapidly with bathocupreine sulfonate whereas the other half reacted slowly. Reduced native protein did not react with bathocupreine sulfonate below 70 degrees C.


Assuntos
Cobre/análise , Eritrócitos/enzimologia , Superóxido Dismutase , Zinco/análise , Animais , Sítios de Ligação , Bovinos , Espectroscopia de Ressonância de Spin Eletrônica , Cinética , Oxirredução , Ligação Proteica , Conformação Proteica , Superóxido Dismutase/análise , Superóxido Dismutase/sangue
6.
Biochim Biophys Acta ; 1079(2): 161-8, 1991 Aug 30.
Artigo em Inglês | MEDLINE | ID: mdl-1655035

RESUMO

The ground state magnetic properties of manganese superoxide dismutase from Thermus thermophilus in its native and reduced forms have been determined using saturation magnetization data. Parallel EPR measurements were used to verify that commonly encountered paramagnetic impurities were at low concentration relative to the metalloprotein. The native enzyme contains high spin Mn(III) (S = 2) with D = +2.44(5) cm-1 and E/D = 0. The reduced enzyme contains high spin Mn(II) (S = 5/2) with D = +0.50(5) cm-1 and E/D = 0.027. These results are in keeping with the suggestions of several previous groups of workers concerning the permissible oxidation and spin states of the manganese, but the zero field splitting parameters are unlike those of known manganese model compounds. In addition, the extinction coefficient for the visible region absorption maximum of the native enzyme and the corresponding difference extinction coefficient (native minus reduced) have been measured using saturation magnetization data to quantitate Mn(III) present. The result, epsilon 480 = 950(80) M-1 cm-1 (delta epsilon 480 = 740(60) M-1 cm-1) agrees with the previously reported value of epsilon 480 = 910 M-1 cm-1 found by total manganese determination (Sato, S. and Nakazawa, K. (1978) J. Biochem. 83, 1165-1171). The wide variation in the reported visible region extinction coefficients of manganese superoxide dismutases from different sources is discussed.


Assuntos
Superóxido Dismutase/química , Thermus/enzimologia , Ditionita , Fenômenos Eletromagnéticos , Espectroscopia de Ressonância de Spin Eletrônica , Manganês/análise , Oxirredução
7.
Biochim Biophys Acta ; 828(3): 369-74, 1985 Apr 29.
Artigo em Inglês | MEDLINE | ID: mdl-2985120

RESUMO

We describe two new characteristics of the EPR of the seven-iron containing ferredoxin from Thermus thermophilus. First, the reduced state of the 3Fe center, which has traditionally been considered to be EPR-silent, has been found to exhibit a delta m = 4 transition, which is unique for Fe-S centers. This signal is similar to that of high-spin Fe2+-EDTA and supports the suggestion that the ground electronic state of the 3Fe cluster is S = 2. Second, we have recorded the EPR spectrum of the fully reduced protein at 9 and 15 GHz and found that changes occur in the signal which are consistent with a weak electronic spin-spin interaction between the [4Fe-4S]+ (S = 1/2) and the reduced 3Fe center. A theoretical explanation is given for the observation of interaction signals with constant effective g values.


Assuntos
Espectroscopia de Ressonância de Spin Eletrônica , Ferredoxinas , Thermus , Ferro , Matemática
8.
Biochim Biophys Acta ; 916(1): 24-8, 1987 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-2822125

RESUMO

Two classes of [2Fe-2S] proteins have been defined according to the mean value gav of their g tensor components (Bertrand, P., Guigliarelli, B., Gayda, J.P., Beardwood, P. and Gibson, J.F. (1985) Biochim. Biophys. Acta 831, 261-266). To characterize their magnetic properties better, we have compared the spin-lattice relaxation behavior of typical proteins which belong to these two classes, namely Spirulina maxima and adrenal ferredoxin for the gav approximately 1.96 class, Thermus thermophilus Rieske protein and Pseudomonas putida benzene dioxygenase for the gav approximately 1.91 class. For all these proteins, the data support the existence of an efficient Orbach process in the highest temperature range, which allows the determination of the exchange coupling parameter, J. From the comparison of the J values obtained in each class, it is concluded that the structural factors which determine the value of the g tensor and the strength of the antiferromagnetic exchange interactions are different.


Assuntos
Proteínas de Bactérias , Complexo III da Cadeia de Transporte de Elétrons , Proteínas Ferro-Enxofre , Metaloproteínas , Animais , Espectroscopia de Ressonância de Spin Eletrônica , Ferredoxinas , Proteínas , Pseudomonas , Spirulina , Suínos , Thermus
9.
Biochim Biophys Acta ; 704(1): 75-89, 1982 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-6284238

RESUMO

The Cu(II) sites of native, azido- and cyano-derivatives of bovine superoxide dismutase (superoxide:superoxide oxidoreductase, EC 1.15.1.1) have been examined by electron-nuclear double resonance (ENDOR). The ENDOR spectrum of the native protein taken at the g parallel extreme shows resolved structure due to the directly coordinated N-atoms of the histidine ligands. These spectra are too complex for interpretation but suggest inequivalent coupling between the electronic spin and the four ligand N-atoms. By contrast, the azido protein reveals one type of nitrogen with well-resolved hyperfine and quadrupole splittings (Azz = 37.9 +/- 1 MHz, Pzz = 1.54 +/- 0.02 MHz), and the cyano from reveals one well-resolved set of nitrogen lines (Azz = 47.8 +/- 0.4 MHz, Pzz = 1.62 +/- 0.01 MHz) and one type of partially resolved nitrogen (Azz = 37.0 +/- 1 MHz). The cyano form also reveals a complex spectrum in the low-frequency domain (1-10 MHz). Through isotopic substitution and computer stimulation, the spectrum is shown to be a composite of the ENDOR from the remote imidazole nitrogens and the cyanide nitrogen. The component of the hyperfine constant perpendicular to the C14N bonds axis is A perpendicular N = 3.9 +/- 0.3 MHz and along the bond axis is A perpendicular N approximately equal to 5.7 MHz. The quadrupole interaction appears to be greatest along the CN axis with Qz'z' = 1.0 +/- 0.1 MHz and Qx'x'y'y' approximately 0. Based on an analysis of the hyperfine and quadrupole interactions seen at two extremes of the electron paramagnetic spectrum, we propose a square-planar arrangement of three imidazole nitrogen and one CN- carbon around the copper. Within this plane two imidazole nitrogens are strongly coupled and magnetically equivalent, the third is inequivalent (slightly weaker hyperfine interactions) and forms a trans relationship with the cyanide. This model is consistent with other observations on the cyano-derivative.


Assuntos
Superóxido Dismutase , Animais , Cátions Bivalentes , Bovinos , Cobre , Cianetos , Espectroscopia de Ressonância de Spin Eletrônica , Análise Espectral , Zinco
10.
Biochim Biophys Acta ; 911(1): 81-94, 1987 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-3024733

RESUMO

The seven-iron-containing ferredoxins from Azotobacter vinelandii and Thermus thermophilus have been investigated by low-temperature magnetic circular dichroism (MCD) and electron paramagnetic resonance (EPR) spectroscopies and room temperature ultraviolet-visible absorption spectroscopy. The results confirm the presence of one trinuclear and one tetranuclear iron-sulfur cluster in both ferredoxins and facilitate comparison of the electronic and magnetic properties of the oxidized and reduced [3Fe-xS] clusters. MCD magnetization data are consistent with an S = 2 ground state for both reduced [3Fe-xS] clusters, but indicate differences in the rhombicity of the zero-field splittings. The data permit rationalization of the absence of a delta M = 4 EPR transition for the reduced [3Fe-xS] cluster in A. vinelandii ferredoxin I. Spectroscopic studies of anaerobically isolated A. vinelandii ferredoxin I do not support the hypothesis that the [3Fe-xS] cluster arises as a result of aerial oxidative damage to a [4Fe-4S] cluster during isolation. The possibility that two distinct forms of [3Fe-xS] clusters can exist in A. vinelandii ferredoxin I was investigated by spectroscopic studies as a function of pH. The results reveal two distinct and interconvertible forms of the reduced [3Fe-xS] cluster, but do not permit rationalization of the inconsistencies in the structural data that have been reported for the oxidized clusters.


Assuntos
Azotobacter/análise , Ferredoxinas , Thermus/análise , Dicroísmo Circular , Espectroscopia de Ressonância de Spin Eletrônica , Concentração de Íons de Hidrogênio , Proteínas Ferro-Enxofre , Oxirredução , Espectrofotometria , Temperatura
11.
Biochim Biophys Acta ; 1142(1-2): 93-8, 1993 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-8457586

RESUMO

Previous work (Dunham, W.R., Hagen, W.R., Fee, J.A., Sands, R.H., Dunbar, J.B., Humblet, C. (1991) An investigation of Chromatium vinosum high-potential iron-sulfur protein by EPR and Mössbauer spectroscopy; evidence for a freezing-induced dimerization in NaCl solutions, Biochimica Biophysica Acta 1079, 253-262) suggested that under specific solution conditions and slow freezing times, samples of oxidized Chromatium vinosum (Cv) high-potential, iron-sulfur protein (HiPIP) form dimeric structures that exhibit characteristic spin-spin interaction in the EPR spectrum. In that study, it was also shown that two HiPIP molecules could approach each other along their Fe1-S4 axes to a distance of approximately 13-14 A, as required by an analysis of the spin-spin physics. This is made possible because of a flattened surface on one side of the molecule within which S4 may, depending on side-chain motions, interact with solvent (Carter, C.W., Jr., Kraut, J., Freer, S.T., Alden, R.A., Sieker, L.C., Adman, E.T., Jensen, L.H. (1972) A comparison of Fe4S4 clusters in high potential iron protein and in ferredoxin, Proc. Natl. Acad. Sci. USA 69, 3527-3529). Here we describe a computer generated, hypothetical model of this proposed dimeric structure which suggests an energetically favorable interaction between two Cv HiPIP molecules and could account for the experimental observations. Two Cv HiPIP molecules brought together along their Fe1-S4 axes and maintained at a center-to-center distance of 14 A can be rotated with respect to each other so as to create complementary interactions between two glutamine residues, two phenylalanine residues, and two leucine residues, and an energetically unfavorable interaction between two arginine residues. Energy minimization calculations using the program XPLOR indicate that this arrangement may provide an overall energetically favorable interaction between the two HiPIP molecules that is strengthened by site-specific binding of Na and Cl ions.


Assuntos
Proteínas de Bactérias/química , Chromatium/química , Proteínas Ferro-Enxofre/química , Complexo de Proteínas do Centro de Reação Fotossintética , Cloreto de Sódio/farmacologia , Sequência de Aminoácidos , Chromatium/efeitos dos fármacos , Proteínas Ferro-Enxofre/efeitos dos fármacos , Modelos Moleculares , Dados de Sequência Molecular , Alinhamento de Sequência
12.
Biochim Biophys Acta ; 1079(3): 253-62, 1991 Sep 20.
Artigo em Inglês | MEDLINE | ID: mdl-1655037

RESUMO

The high-potential iron-sulfur protein (HiPIP) from Chromatium vinosum contains a cubane prosthetic group that shuttles between the [4Fe-4S]3+,2+ states. We find that the EPR spectra from this protein can be explained as a sum of two components, a major one with g = 2.02; 2.04; 2.12, and a minor one with g = 2.04; 2.07; approximately 2.13. In the presence of 0.1-2.0 M NaCl, freezing induces polymerization of the protein (presumably dimers), which is detected as intercluster spin-spin interaction in the EPR. The observed spin-spin interactions are interpreted as being due to two very similar dimeric structures in an approx. 1:2 ratio. Computer simulation of the X- and Q-band EPR spectra shows that the z-components of the g-tensors in each dimer pair must be co-linear, with center-to-center distances between the clusters of approximately 13 A and approximately 16 A. Inspection of possible dimeric structures of C. vinosum HiPIP by standard molecular graphics procedures revealed that the Fe/S cluster is exposed toward a flattened surface and is accessible to solvent. Moreover, the Fe/S clusters in two HiPIP molecules can easily achieve a center-to-center distance of approximately 14 A when approaching along a common 3-fold axis that extends through the S4 sulfur atom of the cubane; the z-component of the EPR g-tensor is co-linear with this symmetry axis.


Assuntos
Chromatium/metabolismo , Proteínas Ferro-Enxofre/química , Espectroscopia de Ressonância de Spin Eletrônica/métodos , Congelamento , Substâncias Macromoleculares , Modelos Estruturais , Concentração Osmolar , Conformação Proteica , Cloreto de Sódio , Espectroscopia de Mossbauer/métodos
13.
Biochim Biophys Acta ; 397(2): 510-8, 1975 Aug 26.
Artigo em Inglês | MEDLINE | ID: mdl-168925

RESUMO

We have proposed that the "doublet" EPR spectra observed during catalysis by a number of coenzyme B12-requiring enzymes arises from a weak electrostatic exchange interaction between an organic free radical and low spin Co(II), B12r. By varying the magnitude of the exchange of coupling we have quite accurately simulated the published EPR spectra from the enzyme systems: diol dehydrase, glycerol dehydrase, ribonucleotide reductase, and ethanolamine ammon-ia lyase. A dipolar model was shown to be incompatible with the observed properties of these systems.


Assuntos
Amônia-Liases , Etanolamina Amônia-Liase , Hidroliases , Propanodiol Desidratase , Ribonucleotídeo Redutases , Vitamina B 12 , Sítios de Ligação , Espectroscopia de Ressonância de Spin Eletrônica , Etanolamina Amônia-Liase/metabolismo , Glicerol , Matemática , Propanodiol Desidratase/metabolismo , Ligação Proteica , Conformação Proteica , Ribonucleotídeo Redutases/metabolismo
14.
Biochim Biophys Acta ; 1140(2): 175-83, 1992 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-1280165

RESUMO

Resonance Raman (RR) spectra are reported for the [2Fe-2S] Rieske protein from Thermus thermophilus (TRP) and phthalate dioxygenase from Pseudomonas cepacia (PDO) as a function of pH and excitation wavelength. Depolarization ratio measurements are presented for the RR spectra of spinach ferredoxin (SFD), TRP, and PDO at 74 K. By comparison with previously published RR spectra of SFD, we suggest reasonable assignments for the spectra of TRP and PDO. The spectra of PDO exhibit virtually no pH dependence, while significant changes are observed in TRP spectra upon raising the pH from 7.3 to 10.1. One band near 270 cm-1, which consists of components at 266 cm-1 and 274 cm-1, is attributed to Fe(III)-N(His) stretching motions. We suggest that these two components arise from conformers having a protonated-hydrogen-bonded imidazole (266 cm-1) and deprotonated-hydrogen-bonded imidazolate (274 cm-1) coordinated to the Fe/S cluster and that the relative populations of the two species are pH-dependent; a simple structural model is proposed to account for this behavior in the respiratory-type Rieske proteins. In addition, we have identified RR peaks associated with the bridging and terminal sulfur atoms of the Fe-S-N cluster. The RR excitation profiles of peaks associated with these atoms are indistinguishable from each other in TRP (pH 7.3) and PDO and differ greatly from those of [2Fe-2S] ferrodoxins. The profiles are bimodal with maxima near 490 nm and > approx. 550 nm. By contrast, bands associated with the Fe-N stretch show a somewhat different enhancement profile. Upon reduction, RR peaks assigned to Fe-N vibrations are no longer observed, with the resulting spectrum being remarkably similar to that reported for reduced adrenodoxin. This indicates that only modes associated with Fe-S bonds are observed and supports the idea that the reducing electron resides on the iron atom coordinated to the two histidine residues. Taken as a whole, the data are consistent with an St2FeSb2Fe[N(His)]t2 structure for the Rieske-type cluster.


Assuntos
Complexo III da Cadeia de Transporte de Elétrons , Proteínas Ferro-Enxofre/química , Oxigenases/química , Burkholderia cepacia/enzimologia , Concentração de Íons de Hidrogênio , Proteínas Ferro-Enxofre/isolamento & purificação , Análise Espectral Raman , Thermus thermophilus/química
15.
Biochim Biophys Acta ; 1388(2): 437-43, 1998 Nov 10.
Artigo em Inglês | MEDLINE | ID: mdl-9858778

RESUMO

Electrochemical measurements show that there are high-potential states of two copper proteins, Pseudomonas aeruginosa azurin and Thermus thermophilus CuA domain; these perturbed states are formed in guanidine hydrochloride (GuHCl) solution in which the proteins are still blue (azurin) and purple (CuA). In each case, the high-potential state forms reversibly. Absorption (azurin, CuA), visible circular dichroism (azurin, CuA), resonance-Raman (CuA), and EPR (CuA) spectra indicate that the structure of the oxidized copper site of each high-potential form is very similar to that of the native protein. It is proposed that GuHCl perturbs one or more H-bonds in the blue or purple copper active site, thereby allowing Cu(I) to adopt a more favorable coordination structure than that in the rigid cavity of the native protein.


Assuntos
Azurina/química , Cobre/química , Complexo IV da Cadeia de Transporte de Elétrons/química , Pseudomonas aeruginosa/química , Thermus thermophilus/química , Proteínas de Bactérias/química , Dicroísmo Circular , Eletroquímica , Espectroscopia de Ressonância de Spin Eletrônica , Guanidina/farmacologia , Ligação de Hidrogênio , Metaloproteínas/química , Estrutura Molecular , Oxirredução , Desnaturação Proteica , Dobramento de Proteína , Espectrofotometria , Análise Espectral Raman
16.
Protein Sci ; 3(11): 2097-103, 1994 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-7703856

RESUMO

Second derivative absorption spectra are reported for the aa3-cytochrome c oxidase from bovine cardiac mitochondria, the aa3-600 ubiquinol oxidase from Bacillus subtilis, the ba3-cytochrome c oxidase from Thermus thermophilis, and the aco-cytochrome c oxidase from Bacillus YN-2000. Together these enzymes provide a range of cofactor combinations that allow us to unequivocally identify the origin of the 450-nm absorption band of the terminal oxidases as the 6-coordinate low-spin heme, cytochrome a. The spectrum of the aco-cytochrome c oxidase further establishes that the split Soret band of cytochrome a, with features at 443 and 450 nm, is common to all forms of the enzyme containing ferrocytochrome a and does not depend on ligand occupancy at the other heme cofactor as previously suggested. To test the universality of this Soret band splitting for 6-coordinate low-spin heme A systems, we have reconstituted purified heme A with the apo forms of the heme binding proteins, hemopexin, histidine-proline-rich glycoprotein and the H64V/V68H double mutant of human myoglobin. All 3 proteins bound the heme A as a (bis)histidine complex, as judged by optical and resonance Raman spectroscopy. In the ferroheme A forms, none of these proteins displayed evidence of Soret band splitting. Heme A-(bis)imidazole in aqueous detergent solution likewise failed to display Soret band splitting. When the cyanide-inhibited mixed-valence form of the bovine enzyme was partially denatured by chemical or thermal means, the split Soret transition of cytochrome a collapsed into a single band at 443 nm.(ABSTRACT TRUNCATED AT 250 WORDS)


Assuntos
Grupo dos Citocromos a/metabolismo , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Heme/análogos & derivados , Animais , Apoproteínas/metabolismo , Bovinos , Grupo dos Citocromos a/química , Transporte de Elétrons , Complexo IV da Cadeia de Transporte de Elétrons/química , Complexo IV da Cadeia de Transporte de Elétrons/genética , Heme/química , Heme/metabolismo , Hemopexina/metabolismo , Mitocôndrias Cardíacas/enzimologia , Mioglobina/genética , Mioglobina/metabolismo , Proteínas/metabolismo , Espectrofotometria/métodos , Análise Espectral Raman/métodos , Ureia/farmacologia
17.
Protein Sci ; 9(11): 2074-84, 2000 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11152119

RESUMO

We describe the design of Escherichia coli cells that synthesize a structurally perfect, recombinant cytochrome c from the Thermus thermophilus cytochrome c552 gene. Key features are (1) construction of a plasmid-borne, chimeric cycA gene encoding an Escherichia coli-compatible, N-terminal signal sequence (MetLysIleSerIleTyrAlaThrLeu AlaAlaLeuSerLeuAlaLeuProAlaGlyAla) followed by the amino acid sequence of mature Thermus cytochrome c552; and (2) coexpression of the chimeric cycA gene with plasmid-borne, host-specific cytochrome c maturation genes (ccmABCDEFGH). Approximately 1 mg of purified protein is obtained from 1 L of culture medium. The recombinant protein, cytochrome rsC552, and native cytochrome c552 have identical redox potentials and are equally active as electron transfer substrates toward cytochrome ba3, a Thermus heme-copper oxidase. Native and recombinant cytochromes c were compared and found to be identical using circular dichroism, optical absorption, resonance Raman, and 500 MHz 1H-NMR spectroscopies. The 1.7 A resolution X-ray crystallographic structure of the recombinant protein was determined and is indistinguishable from that reported for the native protein (Than, ME, Hof P, Huber R, Bourenkov GP, Bartunik HD, Buse G, Soulimane T, 1997, J Mol Biol 271:629-644). This approach may be generally useful for expression of alien cytochrome c genes in E. coli.


Assuntos
Grupo dos Citocromos c/química , Escherichia coli/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Thermus thermophilus/enzimologia , Sequência de Aminoácidos , Divisão Celular , Dicroísmo Circular , Cristalografia por Raios X , Grupo dos Citocromos c/biossíntese , Transporte de Elétrons , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dados de Sequência Molecular , Oxirredução , Plasmídeos/metabolismo , Sinais Direcionadores de Proteínas , Homologia de Sequência de Aminoácidos , Espectrofotometria , Análise Espectral Raman , Raios Ultravioleta
18.
Curr Pharm Biotechnol ; 5(2): 181-9, 2004 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-15078152

RESUMO

Compounds can be screened for pharmaceutical activity either by detecting interactions with specified target molecules such as receptors or enzymes (molecular screening) or observing effects on the structure or physiological activities of cells or tissues (phenotypic screening). Screening at the molecular level has been greatly enhanced by fluorescence methods. Especially the combination of confocal detection with measurements of the amplitudes and time courses of fluorescence fluctuations have reduced sample volumes to < microliters and have increased throughputs to >100000 compounds per day. Screening at the molecular level, however, does not provide information about the effects of test compounds on cellular functions. Phenotypic screening, although much slower than molecular screening, does provide information about effects on cell or tissue structure or function and therefore can be used to eliminate at an early stage compounds that are toxic or do not produce the desired cellular response. Tissue constructs reconstituted using cells of specified types and defined extracellular matrix components provide test systems for detecting the effects of test compounds on cellular mechanical functions such as the development of contractile force and on cell and matrix structure and stiffness. For example, constructs based on vascular smooth muscle cells provide information about effects on cellular contractile force that can be used to identify agents that control blood pressure. Tissue constructs that mimic skeletal, smooth and heart muscles and connective tissues have been produced and can be used to study mechanical and structural responses to active compounds.


Assuntos
Avaliação Pré-Clínica de Medicamentos/métodos , Drogas em Investigação/farmacologia , Fenótipo , Engenharia Tecidual , Animais , Linhagem Celular/efeitos dos fármacos , Células do Tecido Conjuntivo/efeitos dos fármacos , Drogas em Investigação/toxicidade , Matriz Extracelular/efeitos dos fármacos , Marcadores Genéticos/efeitos dos fármacos , Humanos , Músculo Esquelético/efeitos dos fármacos , Miócitos Cardíacos/efeitos dos fármacos , Miócitos de Músculo Liso/efeitos dos fármacos
19.
J Biomol Struct Dyn ; 16(1): 13-20, 1998 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9745890

RESUMO

In this paper, a general method is developed to study site-specific interactions in DNA-protein complexes using heteronuclear NMR spectroscopy and molecular modeling. This method involves two steps: (a) homonuclear 1H NMR and molecular modeling are used to develop a low resolution model and (b) 15N7-guanosine containing oligonucleotides are employed to probe the specific intermolecular interactions predicted in (a). This method is applied to Cro-operator complex due to its small size and extensive prior characterization. Non-exchangeable and exchangeable base protons have been assigned by nuclear Overhauser effect spectroscopy (NOESY) and chemical shift correlation spectroscopy. Extensive line-broadening has been observed in the 1H NMR spectra of the operator DNA in the presence of protein. Differential line-broadening observed in the imino proton region and the comparison of NOESY spectra in the presence and absence of Cro protein show that guanosine-12 and guanosine-14 are involved in the Cro-DNA interaction, while the three A.T base-pairs at the 3'- and 5'-termini play only a minor role in the binding. A model of the Cro-operator DNA complex has been constructed by docking helix-3 of the Cro protein in the major groove and it predicted specific hydrogen bonds between N7 of guanosines-12 and -14 and the side-chain of Lys-32 and Ser-28, respectively. The appearance of a new resonance in the temperature dependent proton detected heteronuclear multiple quantum coherence (HMQC) spectra of the Cro-DNA complex also demonstrates a specific interaction of Cro with guanosine-14 of the operator DNA.


Assuntos
Proteínas de Ligação a DNA/metabolismo , DNA/metabolismo , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Proteínas Repressoras/metabolismo , DNA/química , Proteínas de Ligação a DNA/química , Conformação de Ácido Nucleico , Regiões Operadoras Genéticas , Conformação Proteica , Proteínas Repressoras/química , Proteínas Virais , Proteínas Virais Reguladoras e Acessórias
20.
J Inorg Biochem ; 23(3-4): 279-88, 1985.
Artigo em Inglês | MEDLINE | ID: mdl-2991468

RESUMO

We have examined the redox behavior of the cytochrome c1aa3 complex from Thermus thermophilus. In potentiometric titrations the cytochrome c behaves as an independent center having n = 1 and E = 205 mV (NHE). Under the assumption that the individual centers equilibrate independently in this experiment, changes in the absorption band at 603 nm have been resolved into two components: cytochrome a (n = 1, Em = 270 mV, 60% spectral contribution) and cytochrome a3 (n = 2, Em = 360 mV, 40% spectral contribution). The n = 2 process was attributed to strong chemical coupling between cytochrome a3 and CuB. The enzyme was also titrated with a mixture of NADH and PMS, and the results are shown not to conform to a model of intramolecular equilibrium according to the equilibrium constants obtained from the potentiometric titration. It is suggested that a conformational equilibrium within the complex may control electron transfer between cytochromes a and a3.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons , Thermus/enzimologia , Eletroquímica , Espectroscopia de Ressonância de Spin Eletrônica , Metilfenazônio Metossulfato , NAD , Oxirredução , Potenciometria , Espectrofotometria
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