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1.
J Biol Chem ; 300(3): 105682, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38272233

RESUMO

Cyclotides are plant-derived disulfide-rich cyclic peptides that have a natural function in plant defense and potential for use as agricultural pesticides. Because of their highly constrained topology, they are highly resistant to thermal, chemical, or enzymatic degradation. However, the stability of cyclotides at alkaline pH for incubation times of longer than a few days is poorly studied but important since these conditions could be encountered in the environment, during storage or field application as insecticides. In this study, kalata B1 (kB1), the prototypical cyclotide, was engineered to improve its long-term stability and retain its insecticidal activity via point mutations. We found that substituting either Asn29 or Gly1 to lysine or leucine increased the stability of kB1 by twofold when incubated in an alkaline buffer (pH = 9.0) for 7 days, while retaining its insecticidal activity. In addition, when Gly1 was replaced with lysine or leucine, the mutants could be cyclized using an asparaginyl endopeptidase, in vitro with a yield of ∼90% within 5 min. These results demonstrate the potential to manufacture kB1 mutants with increased stability and insecticidal activity recombinantly or in planta. Overall, the discovery of mutants of kB1 that have enhanced stability could be useful in leading to longer term activity in the field as bioinsecticides.


Assuntos
Ciclotídeos , Inseticidas , Oldenlandia , Ciclotídeos/genética , Ciclotídeos/farmacologia , Ciclotídeos/química , Inseticidas/química , Inseticidas/farmacologia , Leucina , Lisina/genética , Mutagênese , Proteínas de Plantas/metabolismo , Oldenlandia/química , Estabilidade Proteica , Animais , Linhagem Celular , Sobrevivência Celular/efeitos dos fármacos
2.
Chemistry ; 30(7): e202302909, 2024 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-37910861

RESUMO

Nicotinic acetylcholine receptors (nAChRs) are drug targets for neurological diseases and disorders, but selective targeting of the large number of nAChR subtypes is challenging. Marine cone snail α-conotoxins are potent blockers of nAChRs and some have been engineered to achieve subtype selectivity. This engineering effort would benefit from rapid computational methods able to predict mutational energies, but current approaches typically require high-resolution experimental structures, which are not widely available for α-conotoxin complexes. Herein, five mutational energy prediction methods were benchmarked using crystallographic and mutational data on two acetylcholine binding protein/α-conotoxin systems. Molecular models were developed for six nAChR subtypes in complex with five α-conotoxins that were studied through 150 substitutions. The best method was a combination of FoldX and molecular dynamics simulations, resulting in a predictive Matthews Correlation Coefficient (MCC) of 0.68 (85 % accuracy). Novel α-conotoxin mutants designed using this method were successfully validated by experimental assay with improved pharmaceutical properties. This work paves the way for the rapid design of subtype-specific nAChR ligands and potentially accelerated drug development.


Assuntos
Conotoxinas , Receptores Nicotínicos , Conotoxinas/química , Receptores Nicotínicos/genética , Receptores Nicotínicos/química , Receptores Nicotínicos/metabolismo , Antagonistas Nicotínicos/química , Mutação , Simulação de Dinâmica Molecular
3.
J Biol Chem ; 298(4): 101822, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-35283188

RESUMO

Cyclotides have a wide range of bioactivities relevant for agricultural and pharmaceutical applications. This large family of naturally occurring macrocyclic peptides is divided into three subfamilies, with the bracelet subfamily being the largest and comprising the most potent cyclotides reported to date. However, attempts to harness the natural bioactivities of bracelet cyclotides and engineer-optimized analogs have been hindered by a lack of understanding of the structural and functional role of their constituent residues, which has been challenging because bracelet cyclotides are difficult to produce synthetically. We recently established a facile strategy to make the I11L mutant of cyclotide hyen D that is as active as the parent peptide, enabling the subsequent production of a series of variants. In the current study, we report an alanine mutagenesis structure-activity study of [I11L] hyen D to probe the role of individual residues on peptide folding using analytical chromatography, on molecular function using surface plasmon resonance, and on therapeutic potential using cytotoxicity assays. We found that Glu-6 and Thr-15 are critical for maintaining the structure of bracelet cyclotides and that hydrophobic residues in loops 2 and 3 are essential for membrane binding and cytotoxic activity, findings that are distinct from the structural and functional characteristics determined for other cyclotide subfamilies. In conclusion, this is the first report of a mutagenesis scan conducted on a bracelet cyclotide, offering insights into their function and supporting future efforts to engineer bracelet cyclotides for biotechnological applications.


Assuntos
Ciclotídeos , Ciclotídeos/química , Ciclotídeos/genética , Ciclotídeos/toxicidade , Interações Hidrofóbicas e Hidrofílicas , Mutagênese , Ligação Proteica/genética
4.
J Biol Chem ; 298(10): 102413, 2022 10.
Artigo em Inglês | MEDLINE | ID: mdl-36007611

RESUMO

Cyclotides and acyclic versions of cyclotides (acyclotides) are peptides involved in plant defense. These peptides contain a cystine knot motif formed by three interlocked disulfide bonds, with the main difference between the two classes being the presence or absence of a cyclic backbone, respectively. The insecticidal activity of cyclotides is well documented, but no study to date explores the insecticidal activity of acyclotides. Here, we present the first in vivo evaluation of the insecticidal activity of acyclotides from Rinorea bengalensis on the vinegar fly Drosophila melanogaster. Of a group of structurally comparable acyclotides, ribe 31 showed the most potent toxicity when fed to D. melanogaster. We screened a range of acyclotides and cyclotides and found their toxicity toward human red blood cells was substantially lower than toward insect cells, highlighting their selectivity and potential for use as bioinsecticides. Our confocal microscopy experiments indicated their cytotoxicity is likely mediated via membrane disruption. Furthermore, our surface plasmon resonance studies suggested ribe 31 preferentially binds to membranes containing phospholipids with phosphatidyl-ethanolamine headgroups. Despite having an acyclic backbone, we determined the three-dimensional NMR solution structure of ribe 31 is similar to that of cyclotides. In summary, our results suggest that, with further optimization, ribe 31 could have applications as an insecticide due to its potent in vivo activity against D. melanogaster. More broadly, this work advances the field by demonstrating that acyclotides are more common than previously thought, have potent insecticidal activity, and have the advantage of potentially being more easily manufactured than cyclotides.


Assuntos
Ciclotídeos , Drosophila melanogaster , Inseticidas , Proteínas de Plantas , Violaceae , Animais , Humanos , Sequência de Aminoácidos , Ciclotídeos/química , Ciclotídeos/isolamento & purificação , Ciclotídeos/farmacologia , Drosophila melanogaster/efeitos dos fármacos , Inseticidas/química , Inseticidas/isolamento & purificação , Inseticidas/farmacologia , Proteínas de Plantas/química , Proteínas de Plantas/isolamento & purificação , Proteínas de Plantas/farmacologia , Violaceae/química , Eritrócitos/efeitos dos fármacos
5.
Cell Mol Life Sci ; 79(12): 606, 2022 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-36436181

RESUMO

Lactate dehydrogenase 5 (LDH5) is overexpressed in many cancers and is a potential target for anticancer therapy due to its role in aerobic glycolysis. Small-molecule drugs have been developed as competitive inhibitors to bind substrate/cofactor sites of LDH5, but none reached the clinic to date. Recently, we designed the first LDH5 non-competitive inhibitor, cGmC9, a peptide that inhibits protein-protein interactions required for LDH5 enzymatic activity. Peptides are gaining a large interest as anticancer agents to modulate intracellular protein-protein interactions not targetable by small molecules; however, delivery of these peptides to the cytosol, where LDH5 and other anticancer targets are located, remains a challenge for this class of therapeutics. In this study, we focused on the cellular internalisation of cGmC9 to achieve LDH5 inhibition in the cytosol. We designed cGmC9 analogues and compared them for LDH5 inhibition, cellular uptake, toxicity, and antiproliferation against a panel of cancer cell lines. The lead analogue, [R/r]cGmC9, specifically impairs proliferation of cancer cell lines with high glycolytic profiles. Proteomics analysis showed expected metabolic changes in response to decreased glycolysis. This is the first report of a peptide-based LDH5 inhibitor able to modulate cancer metabolism and kill cancer cells that are glycolytic. The current study demonstrates the potential of using peptides as inhibitors of intracellular protein-protein interactions relevant for cancer pathways and shows that active peptides can be rationally designed to improve their cell permeation.


Assuntos
L-Lactato Desidrogenase , Neoplasias , Humanos , Lactato Desidrogenase 5 , Peptídeos/farmacologia , Neoplasias/tratamento farmacológico , Proliferação de Células
6.
Mar Drugs ; 21(3)2023 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-36976203

RESUMO

The venom of marine cone snails is mainly composed of peptide toxins called conopeptides, among which conotoxins represent those that are disulfide-rich. Publications on conopeptides frequently state that conopeptides attract considerable interest for their potent and selective activity, but there has been no analysis yet that formally quantifies the popularity of the field. We fill this gap here by providing a bibliometric analysis of the literature on cone snail toxins from 2000 to 2022. Our analysis of 3028 research articles and 393 reviews revealed that research in the conopeptide field is indeed prolific, with an average of 130 research articles per year. The data show that the research is typically carried out collaboratively and worldwide, and that discoveries are truly a community-based effort. An analysis of the keywords provided with each article revealed research trends, their evolution over the studied period, and important milestones. The most employed keywords are related to pharmacology and medicinal chemistry. In 2004, the trend in keywords changed, with the pivotal event of that year being the approval by the FDA of the first peptide toxin drug, ziconotide, a conopeptide, for the treatment of intractable pain. The corresponding research article is among the top ten most cited articles in the conopeptide literature. From the time of that article, medicinal chemistry aiming at engineering conopeptides to treat neuropathic pain ramped up, as seen by an increased focus on topological modifications (e.g., cyclization), electrophysiology, and structural biology.


Assuntos
Conotoxinas , Caramujo Conus , Animais , Caramujo Conus/química , Conotoxinas/farmacologia , Conotoxinas/química , Peptídeos/farmacologia , Peptídeos/uso terapêutico , Peptídeos/química , Caramujos
7.
Proc Natl Acad Sci U S A ; 117(21): 11399-11408, 2020 05 26.
Artigo em Inglês | MEDLINE | ID: mdl-32398368

RESUMO

Spiders are one of the most successful venomous animals, with more than 48,000 described species. Most spider venoms are dominated by cysteine-rich peptides with a diverse range of pharmacological activities. Some spider venoms contain thousands of unique peptides, but little is known about the mechanisms used to generate such complex chemical arsenals. We used an integrated transcriptomic, proteomic, and structural biology approach to demonstrate that the lethal Australian funnel-web spider produces 33 superfamilies of venom peptides and proteins. Twenty-six of the 33 superfamilies are disulfide-rich peptides, and we show that 15 of these are knottins that contribute >90% of the venom proteome. NMR analyses revealed that most of these disulfide-rich peptides are structurally related and range in complexity from simple to highly elaborated knottin domains, as well as double-knot toxins, that likely evolved from a single ancestral toxin gene.


Assuntos
Proteínas de Artrópodes/química , Proteínas de Artrópodes/genética , Venenos de Aranha/química , Animais , Proteínas de Artrópodes/análise , Austrália , Dípteros/efeitos dos fármacos , Dissulfetos , Evolução Molecular , Feminino , Perfilação da Expressão Gênica , Espectrometria de Massas , Peptídeos/análise , Peptídeos/química , Peptídeos/genética , Filogenia , Conformação Proteica , Proteômica/métodos , Venenos de Aranha/genética , Venenos de Aranha/toxicidade , Aranhas/genética
8.
Nature ; 538(7625): 329-335, 2016 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-27626386

RESUMO

Naturally occurring, pharmacologically active peptides constrained with covalent crosslinks generally have shapes that have evolved to fit precisely into binding pockets on their targets. Such peptides can have excellent pharmaceutical properties, combining the stability and tissue penetration of small-molecule drugs with the specificity of much larger protein therapeutics. The ability to design constrained peptides with precisely specified tertiary structures would enable the design of shape-complementary inhibitors of arbitrary targets. Here we describe the development of computational methods for accurate de novo design of conformationally restricted peptides, and the use of these methods to design 18-47 residue, disulfide-crosslinked peptides, a subset of which are heterochiral and/or N-C backbone-cyclized. Both genetically encodable and non-canonical peptides are exceptionally stable to thermal and chemical denaturation, and 12 experimentally determined X-ray and NMR structures are nearly identical to the computational design models. The computational design methods and stable scaffolds presented here provide the basis for development of a new generation of peptide-based drugs.


Assuntos
Desenho Assistido por Computador , Desenho de Fármacos , Peptídeos/química , Peptídeos/síntese química , Estabilidade Proteica , Motivos de Aminoácidos , Cristalografia por Raios X , Ciclização , Dissulfetos/química , Temperatura Alta , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Peptídeos/genética , Peptídeos Cíclicos/química , Peptídeos Cíclicos/genética , Desnaturação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Estereoisomerismo
9.
J Biol Chem ; 295(32): 10911-10925, 2020 08 07.
Artigo em Inglês | MEDLINE | ID: mdl-32414842

RESUMO

Cyclotides are plant-derived peptides characterized by an ∼30-amino acid-long cyclic backbone and a cystine knot motif. Cyclotides have diverse bioactivities, and their cytotoxicity has attracted significant attention for its potential anticancer applications. Hybanthus enneaspermus (Linn) F. Muell is a medicinal herb widely used in India as a libido enhancer, and a previous study has reported that it may contain cyclotides. In the current study, we isolated 11 novel cyclotides and 1 known cyclotide (cycloviolacin O2) from H. enneaspermus and used tandem MS to determine their amino acid sequences. We found that among these cyclotides, hyen C comprises a unique sequence in loops 1, 2, 3, 4, and 6 compared with known cyclotides. The most abundant cyclotide in this plant, hyen D, had anticancer activity comparable to that of cycloviolacin O2, one of the most cytotoxic known cyclotides. We also provide mechanistic insights into how these novel cyclotides interact with and permeabilize cell membranes. Results from surface plasmon resonance experiments revealed that hyen D, E, L, and M and cycloviolacin O2 preferentially interact with model lipid membranes that contain phospholipids with phosphatidyl-ethanolamine headgroups. The results of a lactate dehydrogenase assay indicated that exposure to these cyclotides compromises cell membrane integrity. Using live-cell imaging, we show that hyen D induces rapid membrane blebbing and cell necrosis. Cyclotide-membrane interactions correlated with the observed cytotoxicity, suggesting that membrane permeabilization and disintegration underpin cyclotide cytotoxicity. These findings broaden our knowledge on the indigenous Indian herb H. enneaspermus and have uncovered cyclotides with potential anticancer activity.


Assuntos
Antineoplásicos Fitogênicos/farmacologia , Ciclotídeos/farmacologia , Descoberta de Drogas , Plantas Medicinais/química , Violaceae/química , Sequência de Aminoácidos , Antineoplásicos Fitogênicos/química , Antineoplásicos Fitogênicos/isolamento & purificação , Linhagem Celular Tumoral , Ciclotídeos/química , Ciclotídeos/isolamento & purificação , Ensaios de Seleção de Medicamentos Antitumorais , Humanos , Proteínas de Plantas/química , Proteínas de Plantas/isolamento & purificação , Proteínas de Plantas/farmacologia , Ressonância de Plasmônio de Superfície , Espectrometria de Massas em Tandem
10.
Chem Rev ; 119(21): 11510-11549, 2019 11 13.
Artigo em Inglês | MEDLINE | ID: mdl-31633928

RESUMO

The venom of the marine predatory cone snails (genus Conus) has evolved for prey capture and defense, providing the basis for survival and rapid diversification of the now estimated 750+ species. A typical Conus venom contains hundreds to thousands of bioactive peptides known as conotoxins. These mostly disulfide-rich and well-structured peptides act on a wide range of targets such as ion channels, G protein-coupled receptors, transporters, and enzymes. Conotoxins are of interest to neuroscientists as well as drug developers due to their exquisite potency and selectivity, not just against prey but also mammalian targets, thereby providing a rich source of molecular probes and therapeutic leads. The rise of integrated venomics has accelerated conotoxin discovery with now well over 10,000 conotoxin sequences published. However, their structural and pharmacological characterization lags considerably behind. In this review, we highlight the diversity of new conotoxins uncovered since 2014, their three-dimensional structures and folds, novel chemical approaches to their syntheses, and their value as pharmacological tools to unravel complex biology. Additionally, we discuss challenges and future directions for the field.


Assuntos
Conotoxinas/química , Conotoxinas/metabolismo , Sequência de Aminoácidos , Animais , Conotoxinas/classificação , Caramujo Conus/metabolismo , Humanos , Modelos Moleculares , Conformação Proteica , Relação Estrutura-Atividade
11.
Mar Drugs ; 19(9)2021 Aug 26.
Artigo em Inglês | MEDLINE | ID: mdl-34564144

RESUMO

The α4ß2 nAChR is implicated in a range of diseases and disorders including nicotine addiction, epilepsy and Parkinson's and Alzheimer's diseases. Designing α4ß2 nAChR selective inhibitors could help define the role of the α4ß2 nAChR in such disease states. In this study, we aimed to modify globular and ribbon α-conotoxin GID to selectively target the α4ß2 nAChR through competitive inhibition of the α4(+)ß2(-) or α4(+)α4(-) interfaces. The binding modes of the globular α-conotoxin [γ4E]GID with rat α3ß2, α4ß2 and α7 nAChRs were deduced using computational methods and were validated using published experimental data. The binding mode of globular [γ4E]GID at α4ß2 nAChR can explain the experimental mutagenesis data, suggesting that it could be used to design GID variants. The predicted mutational energy results showed that globular [γ4E]GID is optimal for binding to α4ß2 nAChR and its activity could not likely be further improved through amino-acid substitutions. The binding mode of ribbon GID with the (α4)3(ß2)2 nAChR was deduced using the information from the cryo-electron structure of (α4)3(ß2)2 nAChR and the binding mode of ribbon AuIB. The program FoldX predicted the mutational energies of ribbon [γ4E]GID at the α4(+)α4(-) interface, and several ribbon[γ4E]GID mutants were suggested to have desirable properties to inhibit (α4)3(ß2)2 nAChR.


Assuntos
Conotoxinas/química , Antagonistas Nicotínicos/química , Receptores Nicotínicos/química , Animais , Sítios de Ligação , Humanos , Modelos Moleculares , Mutagênese , Mutação , Neurônios , Ratos , Relação Estrutura-Atividade
12.
J Nat Prod ; 83(6): 1817-1828, 2020 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-32437150

RESUMO

Viola is the largest genus in the Violaceae plant family and is known for its ubiquitous natural production of cyclotides. Many Viola species are used as medicinal herbs across Asia and are often consumed by humans in teas for the treatment of diseases, including ulcers and asthma. Previous studies reported the isolation of cyclotides from Viola species in many countries in the hope of discovering novel compounds with anti-cancer activities; however, Viola species from Vietnam have not been investigated to date. Here, the discovery of cyclotides from three Viola species (V. arcuata, V. tonkinensis, and V. austrosinensis) collected in the northern mountainous region of Vietnam is reported. Ten cyclotides were isolated from these three Viola species: four are novel and six were previously reported to be expressed in other plants. The structures of three of the new bracelet cyclotides are similar to that of cycloviolacin O2. Because cycloviolacin O2 has previously been shown to have potent activity against a wide range of cancer cell lines including HeLa (human cervical cancer cells) and PC-3 (human prostate cancer cells), the cancer cytotoxicity of the cyclotides isolated from V. arcuata was assessed. All tested cyclotides were cytotoxic against cancer cells, albeit to varying degrees. The sequences discovered in this study significantly expand the understanding of cyclotide diversity, especially in comparison with other cyclotides found in plants from the Asian region.


Assuntos
Antineoplásicos Fitogênicos/química , Antineoplásicos Fitogênicos/farmacologia , Ciclotídeos/química , Ciclotídeos/farmacologia , Viola/química , Sequência de Aminoácidos , Biodiversidade , Linhagem Celular Tumoral , Ensaios de Seleção de Medicamentos Antitumorais , Feminino , Células HeLa , Hemólise/efeitos dos fármacos , Humanos , Masculino , Estrutura Molecular , Extratos Vegetais/química , Extratos Vegetais/farmacologia , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Vietnã
13.
J Biol Chem ; 293(41): 15777-15789, 2018 10 12.
Artigo em Inglês | MEDLINE | ID: mdl-30131340

RESUMO

The relaxin-3 neuropeptide activates the relaxin family peptide 3 (RXFP3) receptor to modulate stress, appetite, and cognition. RXFP3 shows promise as a target for treating neurological disorders, but realization of its clinical potential requires development of smaller RXFP3-specific drugs that can penetrate the blood-brain barrier. Designing such drugs is challenging and requires structural knowledge of agonist- and antagonist-binding modes. Here, we used structure-activity data for relaxin-3 and a peptide RXFP3 antagonist termed R3 B1-22R to guide receptor mutagenesis and develop models of their binding modes. RXFP3 residues were alanine-substituted individually and in combination and tested in cell-based binding and functional assays to refine models of agonist and antagonist binding to active- and inactive-state homology models of RXFP3, respectively. These models suggested that both agonists and antagonists interact with RXFP3 via similar residues in their B-chain central helix. The models further suggested that the B-chain Trp27 inserts into the binding pocket of RXFP3 and interacts with Trp138 and Lys271, the latter through a salt bridge with the C-terminal carboxyl group of Trp27 in relaxin-3. R3 B1-22R, which does not contain Trp27, used a non-native Arg23 residue to form cation-π and salt-bridge interactions with Trp138 and Glu141 in RXFP3, explaining a key contribution of Arg23 to affinity. Overall, relaxin-3 and R3 B1-22R appear to share similar binding residues but may differ in binding modes, leading to active and inactive RXFP3 conformational states, respectively. These mechanistic insights may assist structure-based drug design of smaller relaxin-3 mimetics to manage neurological disorders.


Assuntos
Peptídeos/metabolismo , Receptores Acoplados a Proteínas G/metabolismo , Relaxina/metabolismo , Sítios de Ligação , Células HEK293 , Humanos , Simulação de Acoplamento Molecular , Mutagênese Sítio-Dirigida , Peptídeos/síntese química , Peptídeos/química , Ligação Proteica , Receptores Acoplados a Proteínas G/agonistas , Receptores Acoplados a Proteínas G/antagonistas & inibidores , Receptores Acoplados a Proteínas G/genética , Relaxina/síntese química , Relaxina/química , Eletricidade Estática
14.
Bioinformatics ; 34(6): 1074-1076, 2018 03 15.
Artigo em Inglês | MEDLINE | ID: mdl-29069336

RESUMO

Summary: ArachnoServer is a manually curated database that consolidates information on the sequence, structure, function and pharmacology of spider-venom toxins. Although spider venoms are complex chemical arsenals, the primary constituents are small disulfide-bridged peptides that target neuronal ion channels and receptors. Due to their high potency and selectivity, these peptides have been developed as pharmacological tools, bioinsecticides and drug leads. A new version of ArachnoServer (v3.0) has been developed that includes a bioinformatics pipeline for automated detection and analysis of peptide toxin transcripts in assembled venom-gland transcriptomes. ArachnoServer v3.0 was updated with the latest sequence, structure and functional data, the search-by-mass feature has been enhanced, and toxin cards provide additional information about each mature toxin. Availability and implementation: http://arachnoserver.org. Contact: support@arachnoserver.org. Supplementary information: Supplementary data are available at Bioinformatics online.


Assuntos
Venenos de Aranha/química , Animais , Automação Laboratorial , Dissulfetos/química , Proteínas de Insetos/química , Peptídeos/química , Venenos de Aranha/análise
15.
J Biol Chem ; 292(41): 17101-17112, 2017 10 13.
Artigo em Inglês | MEDLINE | ID: mdl-28851841

RESUMO

Conotoxin GeXIVA inhibits the α9α10 nicotinic acetylcholine receptor (nAChR) and is analgesic in animal models of pain. α-Conotoxins have four cysteines that can have three possible disulfide connectivities: globular (CysI-CysIII and CysII-CysIV), ribbon (CysI-CysIV and CysII-CysIII), or bead (CysI-CysII and CysIII-CysIV). Native α-conotoxins preferably adopt the globular connectivity, and previous studies of α-conotoxins have focused on the globular isomers as the ribbon and bead isomers typically have lower potency at nAChRs than the globular form. A recent report showed that the bead and ribbon isomers of GeXIVA are more potent than the globular isomer, with low nanomolar half-maximal inhibitory concentrations (IC50). Despite this high potency, the therapeutic potential of GeXIVA is limited, because like most peptides, it is susceptible to proteolytic degradation and is challenging to synthesize in high yield. Here we used backbone cyclization as a strategy to improve the folding yield as well as increase the serum stability of ribbon GeXIVA while preserving activity at the α9α10 nAChR. Specifically, cyclization of ribbon GeXIVA with a two-residue linker maintained the biological activity at the human α9α10 nAChR and improved stability in human serum. Short linkers led to selective formation of the ribbon disulfide isomer without requiring orthogonal protection. Overall, this study highlights the value of backbone cyclization in directing folding, improving yields, and stabilizing conotoxins with therapeutic potential.


Assuntos
Analgésicos/química , Conotoxinas/química , Dobramento de Proteína , Ressonância Magnética Nuclear Biomolecular , Domínios Proteicos , Estrutura Secundária de Proteína
16.
Mar Drugs ; 16(4)2018 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-29621159

RESUMO

A diverse range of predatory marine gastropods produce toxins, yet most of these molecules remain uncharacterized. Conus species have received the most attention from researchers, leading to several conopeptides reaching clinical trials. This review aims to summarize what is known about bioactive compounds isolated from species of neglected marine gastropods, especially in the Turridae, Terebridae, Babyloniidae, Muricidae, Buccinidae, Colubrariidae, Nassariidae, Cassidae, and Ranellidae families. Multiple species have been reported to contain bioactive compounds with potential toxic activity, but most of these compounds have not been characterized or even clearly identified. The bioactive properties and potential applications of echotoxins and related porins from the Ranellidae family are discussed in more detail. Finally, the review concludes with a call for research on understudied species.


Assuntos
Organismos Aquáticos/química , Produtos Biológicos/química , Conotoxinas/química , Caramujo Conus/química , Porinas/química , Animais , Organismos Aquáticos/classificação , Organismos Aquáticos/fisiologia , Produtos Biológicos/isolamento & purificação , Produtos Biológicos/farmacologia , Pesquisa Biomédica/tendências , Biotecnologia/métodos , Biotecnologia/tendências , Classificação , Conotoxinas/isolamento & purificação , Conotoxinas/farmacologia , Caramujo Conus/classificação , Caramujo Conus/fisiologia , Conformação Molecular , Porinas/isolamento & purificação , Porinas/farmacologia , Comportamento Predatório
17.
Proc Natl Acad Sci U S A ; 112(30): E4026-35, 2015 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-26170295

RESUMO

We identified a previously unidentified conotoxin gene from Conus generalis whose precursor signal sequence has high similarity to the O1-gene conotoxin superfamily. The predicted mature peptide, αO-conotoxin GeXIVA (GeXIVA), has four Cys residues, and its three disulfide isomers were synthesized. Previously pharmacologically characterized O1-superfamily peptides, exemplified by the US Food and Drug Administration-approved pain medication, ziconotide, contain six Cys residues and are calcium, sodium, or potassium channel antagonists. However, GeXIVA did not inhibit calcium channels but antagonized nicotinic AChRs (nAChRs), most potently on the α9α10 nAChR subtype (IC50 = 4.6 nM). Toxin blockade was voltage-dependent, and kinetic analysis of toxin dissociation indicated that the binding site of GeXIVA does not overlap with the binding site of the competitive antagonist α-conotoxin RgIA. Surprisingly, the most active disulfide isomer of GeXIVA is the bead isomer, comprising, according to NMR analysis, two well-resolved but uncoupled disulfide-restrained loops. The ribbon isomer is almost as potent but has a more rigid structure built around a short 310-helix. In contrast to most α-conotoxins, the globular isomer is the least potent and has a flexible, multiconformational nature. GeXIVA reduced mechanical hyperalgesia in the rat chronic constriction injury model of neuropathic pain but had no effect on motor performance, warranting its further investigation as a possible therapeutic agent.


Assuntos
Conotoxinas/química , Caramujo Conus/química , Antagonistas Nicotínicos/química , Receptores Nicotínicos/química , Amidas/química , Sequência de Aminoácidos , Animais , Sítios de Ligação , Canais de Cálcio/química , Clonagem Molecular , Retículo Endoplasmático/metabolismo , Hiperalgesia/tratamento farmacológico , Concentração Inibidora 50 , Masculino , Modelos Moleculares , Dados de Sequência Molecular , Neuralgia/terapia , Oócitos/citologia , Conformação Proteica , Sinais Direcionadores de Proteínas , Ratos , Ratos Sprague-Dawley , Xenopus laevis
18.
J Biol Chem ; 290(15): 9855-62, 2015 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-25713061

RESUMO

α-Conotoxin LvIA (α-CTx LvIA) is a small peptide from the venom of the carnivorous marine gastropod Conus lividus and is the most selective inhibitor of α3ß2 nicotinic acetylcholine receptors (nAChRs) known to date. It can distinguish the α3ß2 nAChR subtype from the α6ß2* (* indicates the other subunit) and α3ß4 nAChR subtypes. In this study, we performed mutational studies to assess the influence of residues of the ß2 subunit versus those of the ß4 subunit on the binding of α-CTx LvIA. Although two ß2 mutations, α3ß2[F119Q] and α3ß2[T59K], strongly enhanced the affinity of LvIA, the ß2 mutation α3ß2[V111I] substantially reduced the binding of LvIA. Increased activity of LvIA was also observed when the ß2-T59L mutant was combined with the α3 subunit. There were no significant difference in inhibition of α3ß2[T59I], α3ß2[Q34A], and α3ß2[K79A] nAChRs when compared with wild-type α3ß2 nAChR. α-CTx LvIA displayed slower off-rate kinetics at α3ß2[F119Q] and α3ß2[T59K] than at the wild-type receptor, with the latter mutant having the most pronounced effect. Taken together, these data provide evidence that the ß2 subunit contributes to α-CTx LvIA binding and selectivity. The results demonstrate that Val(111) is critical and facilitates LvIA binding; this position has not previously been identified as important to binding of other 4/7 framework α-conotoxins. Thr(59) and Phe(119) of the ß2 subunit appear to interfere with LvIA binding, and their replacement by the corresponding residues of the ß4 subunit leads to increased affinity.


Assuntos
Aminoácidos/metabolismo , Conotoxinas/metabolismo , Peptídeos/metabolismo , Receptores Nicotínicos/metabolismo , Sequência de Aminoácidos , Aminoácidos/química , Aminoácidos/genética , Animais , Sítios de Ligação/genética , Ligação Competitiva , Conotoxinas/química , Conotoxinas/farmacologia , Caramujo Conus/metabolismo , Relação Dose-Resposta a Droga , Feminino , Potenciais da Membrana/efeitos dos fármacos , Modelos Moleculares , Dados de Sequência Molecular , Mutação , Oócitos/metabolismo , Oócitos/fisiologia , Técnicas de Patch-Clamp , Peptídeos/química , Peptídeos/farmacologia , Ligação Proteica , Estrutura Terciária de Proteína , Subunidades Proteicas/química , Subunidades Proteicas/genética , Subunidades Proteicas/metabolismo , Ratos , Receptores Nicotínicos/genética , Receptores Nicotínicos/fisiologia , Homologia de Sequência de Aminoácidos , Xenopus laevis
19.
Mol Biol Evol ; 32(2): 392-405, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25376175

RESUMO

Cyclic proteins have evolved for millions of years across all kingdoms of life to confer structural stability over their acyclic counterparts while maintaining intrinsic functional properties. Here, we show that cyclic miniproteins (or peptides) from Momordica (Cucurbitaceae) seeds evolved in species that diverged from an African ancestor around 19 Ma. The ability to achieve head-to-tail cyclization of Momordica cyclic peptides appears to have been acquired through a series of mutations in their acyclic precursor coding sequences following recent and independent gene expansion event(s). Evolutionary analysis of Momordica cyclic peptides reveals sites that are under selection, highlighting residues that are presumably constrained for maintaining their function as potent trypsin inhibitors. Molecular dynamics of Momordica cyclic peptides in complex with trypsin reveals site-specific residues involved in target binding. In a broader context, this study provides a basis for selecting Momordica species to further investigate the biosynthesis of the cyclic peptides and for constructing libraries that may be screened against evolutionarily related serine proteases implicated in human diseases.


Assuntos
Momordica/metabolismo , Peptídeos Cíclicos/metabolismo , Proteínas de Plantas/metabolismo , Sementes/metabolismo , Evolução Biológica , Dados de Sequência Molecular , Momordica/genética , Peptídeos Cíclicos/genética , Proteínas de Plantas/genética , Inibidores de Serina Proteinase/metabolismo
20.
Biotechnol Bioeng ; 113(10): 2202-12, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-27093300

RESUMO

Disulfide-rich peptides isolated from cone snails are of great interest as drug leads due to their high specificity and potency toward therapeutically relevant ion channels and receptors. They commonly contain the inhibitor cystine knot (ICK) motif comprising three disulfide bonds forming a knotted core. Here we report the successful enzymatic backbone cyclization of an ICK-containing peptide κ-PVIIA, a 27-amino acid conopeptide from Conus purpurascens, using a mutated version of the bacterial transpeptidase, sortase A. Although a slight loss of activity was observed compared to native κ-PVIIA, cyclic κ-PVIIA is a functional peptide that inhibits the Shaker voltage-gated potassium (Kv) channel. Molecular modeling suggests that the decrease in potency may be related to the loss of crucial, but previously unidentified electrostatic interactions between the N-terminus of the peptide and the Shaker channel. This hypothesis was confirmed by testing an N-terminally acetylated κ-PVIIA, which shows a similar decrease in activity. We also investigated the conformational dynamics and hydrogen bond network of cyc-PVIIA, both of which are important factors to be considered for successful cyclization of peptides. We found that cyc-PVIIA has the same conformational dynamics, but different hydrogen bond network compared to those of κ-PVIIA. The ability to efficiently cyclize ICK peptides using sortase A will enable future protein engineering for this class of peptides and may help in the development of novel therapeutic molecules. Biotechnol. Bioeng. 2016;113: 2202-2212. © 2016 Wiley Periodicals, Inc.


Assuntos
Aminoaciltransferases/ultraestrutura , Proteínas de Bactérias/ultraestrutura , Conotoxinas/química , Caramujo Conus/metabolismo , Cisteína Endopeptidases/ultraestrutura , Cistina/química , Modelos Moleculares , Canais de Potássio/ultraestrutura , Aminoaciltransferases/química , Animais , Proteínas de Bactérias/química , Sítios de Ligação , Cisteína Endopeptidases/química , Dissulfetos/química , Ativação Enzimática , Modelos Químicos , Peptídeos/química , Canais de Potássio/química , Ligação Proteica , Conformação Proteica , Dobramento de Proteína
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