Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 87
Filtrar
Mais filtros

Base de dados
País/Região como assunto
Tipo de documento
Intervalo de ano de publicação
1.
Chem Rev ; 121(24): 14682-14905, 2021 12 22.
Artigo em Inglês | MEDLINE | ID: mdl-34902255

RESUMO

Nitric oxide (NO) is an important signaling molecule that is involved in a wide range of physiological and pathological events in biology. Metal coordination chemistry, especially with iron, is at the heart of many biological transformations involving NO. A series of heme proteins, nitric oxide synthases (NOS), soluble guanylate cyclase (sGC), and nitrophorins, are responsible for the biosynthesis, sensing, and transport of NO. Alternatively, NO can be generated from nitrite by heme- and copper-containing nitrite reductases (NIRs). The NO-bearing small molecules such as nitrosothiols and dinitrosyl iron complexes (DNICs) can serve as an alternative vehicle for NO storage and transport. Once NO is formed, the rich reaction chemistry of NO leads to a wide variety of biological activities including reduction of NO by heme or non-heme iron-containing NO reductases and protein post-translational modifications by DNICs. Much of our understanding of the reactivity of metal sites in biology with NO and the mechanisms of these transformations has come from the elucidation of the geometric and electronic structures and chemical reactivity of synthetic model systems, in synergy with biochemical and biophysical studies on the relevant proteins themselves. This review focuses on recent advancements from studies on proteins and model complexes that not only have improved our understanding of the biological roles of NO but also have provided foundations for biomedical research and for bio-inspired catalyst design in energy science.


Assuntos
Hemeproteínas , Óxido Nítrico , Eletrônica , Heme/química , Ferro/química , Óxido Nítrico/química , Óxidos de Nitrogênio/química
2.
Analyst ; 147(3): 450-460, 2022 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-34985468

RESUMO

Loop-mediated isothermal amplification (LAMP) is an outstanding method for molecular diagnostics, as the rapid, specific, and sensitive amplification of target genes is possible. However, it is necessary to measure fluorescence in the quantitative analysis of LAMP products, so a sophisticated optical setup is required. This study tried to develop a novel sensing method that can quantify target analytes with simple equipment, such as nonspectroscopic white light and a CMOS camera. To achieve this, a retroreflective Janus particle (RJP) as a probe and specially designed loop primers, fluorescein isothiocyanate (FITC)- and biotin-modified loop primers, were introduced into the LAMP system. By performing LAMP in the presence of designed primers, double-stranded amplicons possessing FITC and biotin labels at each end are generated in proportion to the quantity of the target pathogen. Using the anti-FITC antibody-modified sensing surface and streptavidin-conjugated RJP probes, the amplicons can be captured in sandwich-configuration and detected under nonspectroscopic conditions composed of white light and a camera. To confirm the feasibility of the sensing system, the invA gene of Salmonella was selected as the target. It was possible to quantitatively analyze the Salmonella concentration from 0 to 106 colony-forming units, sufficiently covering the required detection range. In addition, quantitative analyses of pathogens in contaminated food sources, including milk and chicken meat, were successfully conducted with a limit of detection of 10 CFU.


Assuntos
Amplificação de Genes , Técnicas de Amplificação de Ácido Nucleico , Animais , Primers do DNA , Leite , Salmonella/genética , Sensibilidade e Especificidade
3.
Inorg Chem ; 60(21): 16074-16078, 2021 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-34672568

RESUMO

MitoNEET, a key regulatory protein in mitochondrial energy metabolism, exhibits a uniquely ligated [2Fe-2S] cluster with one histidine and three cysteines. This unique cluster has been postulated to sense the redox environment and release Fe-S cofactors under acidic pH. Reported herein is a synthetic system that shows how [2Fe-2S] clusters react with protons and rearrange their coordination geometry. The low-temperature stable, site-differentiated clusters [Fe2S2(SPh)3(CF3COO)]2- and [Fe2S2(SPh)3(py)]- have been prepared via controlled protonation below -35 °C and characterized by NMR, UV-vis, and X-ray absorption spectroscopy. Both complexes exhibit anodically shifted redox potentials compared to [Fe2S2(SPh)4]2- and convert to [Fe4S4(SPh)4]2- upon warming to room temperature. The current study provides insight into how mitoNEET releases its [2Fe-2S] in response to highly tuned acidic conditions, the chemistry of which may have further implications in Fe-S biogenesis.


Assuntos
Proteínas Ferro-Enxofre
4.
Inorg Chem ; 60(21): 15910-15917, 2021 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-34180664

RESUMO

Iron-sulfur clusters (Fe-S) have been well established as a target for nitric oxide (NO) in biological systems. Complementary to protein-bound studies, synthetic models have provided a platform to study what iron nitrosylated products and byproducts are produced depending on a controlled reaction environment. We have previously shown a model [2Fe-2S] system that produced a dinitrosyl iron complex (DNIC) upon nitrosylation along with hydrogen sulfide (H2S), another important gasotransmitter, in the presence of thiol, and hypothesized a similar reactivity pattern with [4Fe-4S] clusters which have largely produced inconsistent reaction products across biological and synthetic systems. Roussin's black anion (RBA), [Fe4(µ3-S)3(NO)7]-, is a previously established reaction product from synthetic [4Fe-4S] clusters with NO. Here, we present a new reactivity for the nitrosylation of a synthetic [4Fe-4S] cluster in the presence of thiol and thiolate. [Et4N]2[Fe4S4(SPh)4] (1) was nitrosylated in the presence of excess PhSH to generate H2S and an "RBA-like" intermediate that when further reacted with [NEt4][SPh] produced a {Fe(NO)2}9 DNIC, [Et4N][Fe(NO)2(SPh)2] (2). This "RBA-like" intermediate proved difficult to isolate but shares striking similarities to RBA in the presence of thiol based on IR υ(NO) stretching frequencies. Surprisingly, the same reaction products were produced when the reaction started with RBA and thiol. Similar to 1/NO, RBA in the presence of thiol and thiolate generates stoichiometric amounts of DNIC while releasing its bridging sulfides as H2S. These results suggest not only that RBA may not be the final product of [4Fe-4S] + NO but also that RBA has unprecedented reactivity with thiols and thiolates which may explain current challenges around identifying biological nitrosylated Fe-S clusters.


Assuntos
Óxido Nítrico
5.
Inorg Chem ; 57(5): 2594-2602, 2018 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-29443517

RESUMO

The reduction of nitrate (NO3-) to nitrite (NO2-) is of significant biological and environmental importance. While MoIV(O) and MoVI(O)2 complexes that mimic the active site structure of nitrate reducing enzymes are prevalent, few of these model complexes can reduce nitrate to nitrite through oxygen atom transfer (OAT) chemistry. We present a novel strategy to induce nitrate reduction chemistry of a previously known catalyst MoIV(O)(SN)2 (2), where SN = bis(4- tert-butylphenyl)-2-pyridylmethanethiolate, that is otherwise incapable of achieving OAT with nitrate. Addition of nitrate with the Lewis acid Sc(OTf)3 (OTf = trifluoromethanesulfonate) to 2 results in an immediate and clean conversion of 2 to MoVI(O)2(SN)2 (1). The Lewis acid additive further reacts with the OAT product, nitrite, to form N2O and O2. This work highlights the ability of Sc3+ additives to expand the reactivity scope of an existing MoIV(O) complex together with which Sc3+ can convert nitrate to stable gaseous molecules.


Assuntos
Materiais Biomiméticos/química , Ácidos de Lewis/química , Molibdênio/química , Nitratos/química , Compostos Organometálicos/química , Oxirredutases/química , Materiais Biomiméticos/metabolismo , Ácidos de Lewis/metabolismo , Estrutura Molecular , Molibdênio/metabolismo , Nitratos/metabolismo , Compostos Organometálicos/metabolismo , Oxirredução , Oxirredutases/metabolismo
7.
J Am Chem Soc ; 138(49): 16148-16158, 2016 12 14.
Artigo em Inglês | MEDLINE | ID: mdl-27960334

RESUMO

A mixed-valent Cu(I)Cu(II) complex, [CuI,II2(UN-O-)]2+ (1), reacts with NO(g) at -80 °C to form [CuI,II2(UN-O-)(NO)]2+ (2), best described as a mixed-valent nitrosyl complex that has a ν(N-O) band at 1670 cm-1 in its infrared (IR) spectrum. Complex 2 undertakes a one-electron oxidation via the addition of O2(g) to generate a new intermediate, best described as a superoxide and nitrosyl adduct, [CuII2(UN-O-)(NO)(O2-)]2+ (3), based on its distinctively blue-shifted ν(N-O) band at 1853 cm-1. Over the course of 20 min at -80 °C, 3 is converted to the peroxynitrite (PN) complex [CuII2(UN-O-)(-OON═O)]2+ (4), which was characterized by low-temperature electrospray ionization mass spectrometry (ESI-MS) and IR spectroscopy; ν(N-O) absorptions at 1520 and 1640 cm-1 have been assigned as cis- and trans-conformers of the PN ligand in 4. Alternatively, the superoxide complex [CuII2(UN-O-)(O2•-)]2+ (5) is found to react with NO(g) to generate the same intermediate superoxide and nitrosyl adduct 3 (based on IR criteria), which likewise converts to the same PN complex 4. The O-O bond in 4 undergoes heterolysis in dichloromethane solvent and is postulated to produce nitronium ion, leading to ortho-nitration of 2,4-di-tert-butylphenol (DTBP). However, in 2-methyltetrahydrofuran as solvent, the O-O bond undergoes homolysis to generate •NO2 (detected spectrophotometrically) and a putative higher-valent complex, [CuII,III2(UN-O-)(O2-)]2+, that abstracts a H-atom from DTBP to give [CuII2(UN-O-)(OH)]2+ and a phenoxyl radical. The latter may dimerize to form the bis-phenol observed experimentally or couple with the •NO2 present, leading to o-phenol nitration.


Assuntos
Complexos de Coordenação/síntese química , Cobre/química , Óxido Nítrico/química , Oxigênio/química , Ácido Peroxinitroso/química , Complexos de Coordenação/química , Estrutura Molecular
8.
Acc Chem Res ; 48(8): 2453-61, 2015 Aug 18.
Artigo em Inglês | MEDLINE | ID: mdl-26197209

RESUMO

Nitric oxide (NO) is an important signaling molecule that is involved in many physiological and pathological functions. Iron-sulfur proteins are one of the main reaction targets for NO, and the [Fe-S] clusters within these proteins are converted to various iron nitrosyl species upon reaction with NO, of which dinitrosyl iron complexes (DNICs) are the most prevalent. Much progress has been made in identifying the origin of cellular DNIC generation. However, it is not well-understood which other products besides DNICs may form during [Fe-S] cluster degradation nor what effects DNICs and other degradation products can have once they are generated in cells. Even more elusive is an understanding of the manner by which cells cope with unwanted [Fe-S] modifications by NO. This Account describes our synthetic modeling efforts to identify cluster degradation products derived from the [2Fe-2S]/NO reaction in order to establish their chemical reactivity and repair chemistry. Our intent is to use the chemical knowledge that we generate to provide insight into the unknown biological consequences of cluster modification. Our recent advances in three different areas are described. First, new reaction conditions that lead to the formation of previously unrecognized products during the reaction of [Fe-S] clusters with NO are identified. Hydrogen sulfide (H2S), a gaseous signaling molecule, can be generated from the reaction between [2Fe-2S] clusters and NO in the presence of acid or formal H• (e(-)/H(+)) donors. In the presence of acid, a mononitrosyl iron complex (MNIC) can be produced as the major iron-containing product. Second, cysteine analogues can efficiently convert MNICs back to [2Fe-2S] clusters without the need for any other reagents. This reaction is possible for cysteine analogues because of their ability to labilize NO from MNICs and their capacity to undergo C-S bond cleavage, providing the necessary sulfide for [2Fe-2S] cluster formation. Lastly, unique dioxygen reactivity of various types of DNICs has been established. N-bound neutral {Fe(NO)2}(10) DNICs react with O2 to generate low-temperature stable peroxynitrite (ONOO(-)) species, which then carry out nitration chemistry in the presence of phenolic substrates, relevant to tyrosine nitration chemistry. The reaction between S-bound anionic {Fe(NO)2}(9) DNICs and O2 results in the formation of Roussin's red esters (RREs) and thiol oxidation products, chemistry that may be important in biological cysteine oxidation. The N-bound cationic {Fe(NO)2}(9) DNICs can spontaneously release NO, and this property can be utilized in developing a new class of NO-donating agents with anti-inflammatory activity.


Assuntos
Ferro/química , Óxido Nítrico/metabolismo , Óxidos de Nitrogênio/química , Animais , Anti-Inflamatórios/química , Anti-Inflamatórios/farmacologia , Linhagem Celular , Cristalografia por Raios X , Cisteína/química , Citocinas/metabolismo , Sulfeto de Hidrogênio/metabolismo , Proteínas Ferro-Enxofre/química , Proteínas Ferro-Enxofre/metabolismo , Macrófagos/citologia , Macrófagos/efeitos dos fármacos , Macrófagos/metabolismo , Camundongos , Conformação Molecular , Óxidos de Nitrogênio/síntese química , Oxirredução , Oxigênio/química , Ácido Peroxinitroso/química , Transdução de Sinais , Espectrometria de Fluorescência
9.
Inorg Chem ; 55(11): 5485-501, 2016 Jun 06.
Artigo em Inglês | MEDLINE | ID: mdl-27203448

RESUMO

Dinitrosyl iron complexes (DNICs) are among the most abundant NO-derived cellular species. Monomeric DNICs can exist in the {Fe(NO)2}(9) or {Fe(NO)2}(10) oxidation state (in the Enemark-Feltham notation). However, experimental studies of analogous DNICs in both oxidation states are rare, which prevents a thorough understanding of the differences in the electronic structures of these species. Here, the {Fe(NO)2}(9) DNIC [Fe(dmp)(NO)2](OTf) (1; dmp = 2,9-dimethyl-1,10-phenanthroline) is synthesized from a ferrous precursor via an unusual pathway, involving disproportionation of an {FeNO}(7) complex to yield the {Fe(NO)2}(9) DNIC and a ferric species, which is subsequently reduced by NO gas to generate a ferrous complex that re-enters the reaction cycle. In contrast to most {Fe(NO)2}(9) DNICs with neutral N-donor ligands, 1 exhibits high solution stability and can be characterized structurally and spectroscopically. Reduction of 1 yields the corresponding {Fe(NO)2}(10) DNIC [Fe(dmp)(NO)2] (2). The Mössbauer isomer shift of 2 is 0.08 mm/s smaller than that of 1, which indicates that the iron center is slightly more oxidized in the reduced complex. The nuclear resonance vibrational spectra (NRVS) of 1 and 2 are distinct and provide direct experimental insight into differences in bonding in these complexes. In particular, the symmetric out-of-plane Fe-N-O bending mode is shifted to higher energy by 188 cm(-1) in 2 in comparison to 1. Using quantum chemistry centered normal coordinate analysis (QCC-NCA), this is shown to arise from an increase in Fe-NO bond order and a stiffening of the Fe(NO)2 unit upon reduction of 1 to 2. DFT calculations demonstrate that the changes in bonding arise from an iron-centered reduction which leads to a distinct increase in Fe-NO π-back-bonding in {Fe(NO)2}(10) DNICs in comparison to the corresponding {Fe(NO)2}(9) complexes, in agreement with all experimental findings. Finally, the implications of the electronic structure of DNICs for their reactivity are discussed, especially with respect to N-N bond formation in NO reductases.

10.
Inorg Chem ; 54(22): 10559-67, 2015 Nov 16.
Artigo em Inglês | MEDLINE | ID: mdl-26084943

RESUMO

The nitrosylation of inorganic protein cofactors, specifically that of [Fe-S] clusters to form iron nitrosyls, plays a number of important roles in biological systems. In some of these cases, it is expected that a repair process reverts the nitrosylated iron species to intact [Fe-S] clusters. The repair of nitrosylated [2Fe-2S] cluster, primarily in the form of protein-bound dinitrosyl iron complexes (DNICs), has been observed in vitro and in vivo, but the mechanism of this process remains uncertain. The present work expands upon a previous observation (Fitzpatrick et al. J. Am. Chem. Soc. 2014, 136, 7229) of the ability of mononitrosyl iron complexes (MNICs) to be converted into [2Fe-2S] clusters by the addition of nothing other than a cysteine analogue. Herein, each of the critical elementary steps in the cluster repair has been dissected to elucidate the roles of the cysteine analogue. Systematic variations of a cysteine analogue employed in the repair reaction suggest that (i) the bidentate coordination of a cysteine analogue to MNIC promotes NO release from iron, and (ii) deprotonation of the α carbon of the ferric-bound cysteine analogue leads to the C-S cleavage en route to the formation of [2Fe-2S] cluster. The [2Fe-2S] cluster bearing a cysteine analogue has also been synthesized from thiolate-bridged iron dimers of the form [Fe2(µ-SR)2(SR)4](0/2-), which implies that such species may be present as intermediates in the cluster repair. In addition to MNICs, mononuclear tetrathiolate ferric or ferrous species have been established as another form of iron from which [2Fe-2S] clusters can be generated without need for any other reagent but a cysteine analogue. The results of these experiments bring to light new chemistry of classic coordination complexes and provides further insight into the repair of NO-modified [2Fe-2S] clusters.


Assuntos
Cisteína/análogos & derivados , Cisteína/síntese química , Compostos Ferrosos/síntese química , Óxidos de Nitrogênio/química , Propionatos/química , Compostos de Enxofre/síntese química , Ligantes , Modelos Químicos , Mimetismo Molecular , Oxirredução
11.
J Cell Physiol ; 229(10): 1306-11, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24638209

RESUMO

Pumilio and FBF (PUF) proteins are conserved stem cell regulators that maintain germline stem cells (GSCs) in worms and flies. Moreover, they are also present in vertebrate stem cells. The nematode Caenorhabditis elegans has multiple PUF proteins with specialized roles. Among them, PUF-8 protein controls multiple cellular processes, including proliferation, differentiation, sperm-oocyte decision, and cell fate reprogramming, depending on the genetic context in the C. elegans germline. In this review, we describe the possible mechanisms of how PUF-8 protein systematically controls multiple cellular processes in the C. elegans germline. Since PUF proteins are evolutionarily conserved, we suggest that a similar mechanism may be involved in controlling stem cell regulation and differentiation in other organisms, including humans.


Assuntos
Proteínas de Caenorhabditis elegans/metabolismo , Caenorhabditis elegans/metabolismo , Diferenciação Celular , Linhagem da Célula , Reprogramação Celular , Oócitos/metabolismo , Proteínas de Ligação a RNA/metabolismo , Espermatozoides/metabolismo , Células-Tronco/metabolismo , Animais , Caenorhabditis elegans/genética , Proteínas de Caenorhabditis elegans/genética , Proliferação de Células , Feminino , Regulação da Expressão Gênica no Desenvolvimento , Humanos , Masculino , Proteínas de Ligação a RNA/genética , Transdução de Sinais
12.
J Am Chem Soc ; 136(34): 11874-7, 2014 Aug 27.
Artigo em Inglês | MEDLINE | ID: mdl-25113815

RESUMO

The crosstalk between two biologically important signaling molecules, nitric oxide (NO) and hydrogen sulfide (H2S), proceeds via elusive mechanism(s). Herein we report the formation of H2S by the action of NO on synthetic [2Fe-2S] clusters when the reaction environment is capable of providing a formal H(•) (e(-)/H(+)). Nitrosylation of (NEt4)2[Fe2S2(SPh)4] (1) in the presence of PhSH or (t)Bu3PhOH results in the formation of (NEt4)[Fe(NO)2(SPh)2] (2) and H2S with the concomitant generation of PhSSPh or (t)Bu3PhO(•). The amount of H2S generated is dependent on the electronic environment of the [2Fe-2S] cluster as well as the type of H(•) donor. Employment of clusters with electron-donating groups or H(•) donors from thiols leads to a larger amount of H2S evolution. The 1/NO reaction in the presence of PhSH exhibits biphasic decay kinetics with no deuterium kinetic isotope effect upon PhSD substitution. However, the rates of decay increase significantly with the use of 4-MeO-PhSH or 4-Me-PhSH in place of PhSH. These results provide the first chemical evidence to suggest that [Fe-S] clusters are likely to be a site for the crosstalk between NO and H2S in biology.


Assuntos
Ferredoxinas/química , Sulfeto de Hidrogênio/química , Óxido Nítrico/química , Deutério/química , Ligantes , Estrutura Molecular , Oxirredução , Espectrometria de Fluorescência , Espectrofotometria Ultravioleta
13.
J Am Chem Soc ; 136(20): 7229-32, 2014 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-24805884

RESUMO

Reversible modification of iron-sulfur clusters by nitric oxide acts as a genetic switch in a group of regulatory proteins. While the conversion of [Fe-S] clusters to iron-nitrosyls has been widely studied in the past, little is known about the reverse process, the repair of [Fe-S] clusters. Reported here is a system in which a mononitrosyl iron complex (MNIC), (PPN)[Fe(S(t)Bu)3(NO)] (1), is converted to a [2Fe-2S] cluster, (PPN)2[Fe2S2(SCH2CH2C(O)OMe)4] (2). This conversion requires only the addition of a cysteine analogue, 3-mercaptomethylpropionate (MMP), at room temperature without the need for any other reagents. The identity of 2 was confirmed spectroscopically, chemically, crystallographically, and analytically. Mass spectrometry and (34)S labeling studies support that the bridging sulfides in 2 derive from the added MMP, the cysteine analogue. The NO lost during the conversion of 1 to 2 is trapped in a dinitrosyl iron side product, (PPN)[Fe(SCH2CH2C(O)OMe)2(NO)2] (4). The present system implies that MNICs are likely intermediates in the repair of NO-damaged [2Fe-2S] clusters and that cysteine is a viable molecule responsible for the destabilization of MINCs and the formation of [2Fe-2S] clusters.


Assuntos
Cisteína/química , Proteínas Ferro-Enxofre/química , Ferro/química , Óxidos de Nitrogênio/química , Cisteína/análogos & derivados , Modelos Moleculares , Conformação Molecular
14.
Environ Pollut ; 343: 123270, 2024 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-38163627

RESUMO

The cross-shelf distributions of total mercury (THg), methylmercury (MeHg) and organic and inorganic matter, as well as the presence of the hgcA gene were investigated on the East Siberian Shelf (ESS) to understand the processes underlying the speciation of sedimentary Hg. Samples were collected from 12 stations grouped into four zones based on water depth: inner shelf (5 stations), mid-shelf (3 stations), outer shelf (2 stations), and slope (2 stations). The THg concentration in the surface sediment increased from the inner shelf (0.25 ± 0.023 nmol g-1) toward the slope (0.52 nmol g-1), and, when normalized to total organic carbon content, the THg showed a positive correlation with the clay-to-sand ratio (r2 = 0.48, p = 0.012) and degree of chemical weathering (r2 = 0.79, p = 0.0001). The highest MeHg concentrations (3.0 ± 1.8 pmol g-1), as well as peaks in the S/C ratio (0.012 ± 0.002) of sediment-leached organic matter, were found on the mid-shelf, suggesting that the activities of sulfate reducers control the net Hg(II) methylation rates in the sediment. This was supported by results from a principal component analysis (PCA) performed with Hg species concentrations and sediment-leached organic matter compositions. The site-specific variation in MeHg showed the highest similarity with that of CHONS compounds in the PCA, where Deltaproteobacteria were projected to be putative Hg(II) methylators in the gene analysis. In summary, the hydrodynamic sorting of lithogenic particles appears to govern the cross-shelf distribution of THg, and in situ methylation is considered a major source of MeHg in the ESS sediment.


Assuntos
Mercúrio , Compostos de Metilmercúrio , Poluentes Químicos da Água , Mercúrio/análise , Sedimentos Geológicos/química , Poluentes Químicos da Água/análise , Monitoramento Ambiental/métodos , Compostos de Metilmercúrio/análise , Oceanos e Mares
15.
Inorg Chem ; 52(15): 8706-12, 2013 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-23865493

RESUMO

Protonation-assisted deoxygenation of a mono-oxo molybdenum center has been observed in many oxotransferases when the enzyme removes an oxo group to regenerate a substrate binding site. Such a reaction is reported here with discrete synthetic mono-oxo bis(dithiolene) molybdenum and tungsten complexes, the chemistry of which had been rarely studied because of the instability of the resulting deoxygenated products. An addition of tosylic acid to an acetonitrile solution of [Mo(IV)O(S2C2Ph2)2](2-) (1) and [W(IV)O(S2C2Ph2)2](2-) (2) results in the loss of oxide with a concomitant formation of novel deoxygenated complexes, [M(MeCN)2(S2C2Ph2)2] (M = Mo (3), W (4)), that have been isolated and characterized. Whereas protonation of 1 exclusively produces 3, two different reaction products can be generated from 2; an oxidized product, [WO(S2C2Ph2)2](-), is produced with 1 equiv of acid while a deoxygenated product, [W(MeCN)2(S2C2Ph2)2] (4), is generated with an excess amount of proton. Alternatively, complexes 3 and 4 can be obtained from photolysis of [Mo(CO)2(S2C2Ph2)2] (5) and [W(CO)2(S2C2Ph2)2] (6) in acetonitrile. A di- and a monosubstituted adducts of 3, [Mo(CO)2(S2C2Ph2)2] (5) and [Mo(PPh3)(MeCN)(S2C2Ph2)2] (7) are also reported.


Assuntos
Molibdênio/química , Compostos Organometálicos/química , Oxigênio/química , Prótons , Tungstênio/química , Fosfinas/química , Fotólise
17.
Nat Commun ; 14(1): 496, 2023 Jan 30.
Artigo em Inglês | MEDLINE | ID: mdl-36717558

RESUMO

Acid-base reactions are ubiquitous, easy to prepare, and execute without sophisticated equipment. Acids and bases are also inherently complementary and naturally map to a universal representation of "0" and "1." Here, we propose how to leverage acids, bases, and their reactions to encode binary information and perform information processing based upon the majority and negation operations. These operations form a functionally complete set that we use to implement more complex computations such as digital circuits and neural networks. We present the building blocks needed to build complete digital circuits using acids and bases for dual-rail encoding data values as complementary pairs, including a set of primitive logic functions that are widely applicable to molecular computation. We demonstrate how to implement neural network classifiers and some classes of digital circuits with acid-base reactions orchestrated by a robotic fluid handling device. We validate the neural network experimentally on a number of images with different formats, resulting in a perfect match to the in-silico classifier. Additionally, the simulation of our acid-base classifier matches the results of the in-silico classifier with approximately 99% similarity.

18.
Biochemistry ; 51(5): 937-43, 2012 Feb 07.
Artigo em Inglês | MEDLINE | ID: mdl-22257222

RESUMO

DNA-based nanomechanical devices can be used to characterize the action of DNA-distorting proteins. Here, we have constructed a device wherein two DNA triple-crossover (TX) molecules are connected by a shaft, similar to a previous device that measured the binding free energy of integration host factor. In our case, the binding site on the shaft contains the sequence recognized by SoxR protein, the apo form of which is a transcriptional activator. Another active form is oxidized [2Fe-2S] SoxR formed during redox sensing, and previous data suggest that activated Fe-SoxR distorts its binding site by localized DNA untwisting by an amount that corresponds to ~2 bp. A pair of dyes report the fluorescence resonance energy transfer (FRET) signal between the two TX domains, reflecting changes in the shape of the device upon binding of the protein. The TX domains are used to amplify the signal expected from a relatively small distortion of the DNA binding site. From FRET analysis of apo-SoxR binding, the effect of apo-SoxR on the original TX device is similar to the effect of shortening the TX device by 2 bp. We estimate that the binding free energy of apo-SoxR on the DNA target site is 3.2-6.1 kcal/mol.


Assuntos
Apoproteínas/química , Proteínas de Bactérias/química , DNA Bacteriano/química , Nanotecnologia/instrumentação , Conformação de Ácido Nucleico , Fatores de Transcrição/química , Sequência de Bases , Proteínas de Ligação a DNA/química , Ensaio de Desvio de Mobilidade Eletroforética , Transferência Ressonante de Energia de Fluorescência , Modelos Moleculares , Dados de Sequência Molecular
19.
Inorg Chem ; 51(15): 7951-3, 2012 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-22834940

RESUMO

Inspired by the CO(2)-reductatse activity of tungsten-dependent formate dehydrogenases (W-FDHs), a reduced W-FDH model, [W(IV)(OH)(S(2)C(2)Ph(2))(2)](-), was prepared in situ through hydrolysis of [W(IV)(OPh)(S(2)C(2)Ph(2))(2)](-) (1) and its reactivity with CO(2) was investigated. The reaction between [W(IV)(OH)(S(2)C(2)Ph(2))(2)](-) and CO(2) at room temperature leads to the formation of [W(IV)(O)(S(2)C(2)Ph(2))(2)](2-) (2), which slowly oxidizes to [W(V)(O)(S(2)C(2)Ph(2))(2)](-) (3). Isotopic labeling experiments reveal that the O atom in CO(2) incorporates into 3. This implies that there is carbonic anhydrase like activity, in which carbonation and decarboxylation are mediated by a bis(dithiolene)tungsten complex.

20.
Inorg Chem ; 51(19): 10086-8, 2012 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-22957514

RESUMO

New types of degradation products of iron-sulfur clusters by nitric oxide (NO) have been identified in the acidic environment. In the absence of acid, NO reacts with (Et(4)N)(2)[Fe(2)S(2)Cl(4)] (1) to form a {Fe(NO)(2)}(9) dinitrosyliron complex, (Et(4)N)[Fe(NO)(2)Cl(2)] (2), wherein the bridging sulfides are oxidized to elemental sulfur by four electrons (2S(2-) → 2S(0) + 4e(-)). In contrast, the successive additions of NO and HCl to 1 result in the formation of a {Fe(NO)}(7) mononitrosyliron complex, (Et(4)N)[Fe(NO)Cl(3)] (3), along with elemental sulfur and hydrogen sulfide (H(2)S), which are the two-electron-oxidized products of the bridging sulfides (2S(2-) + 2H(+) → H(2)S + S(0) + 2e(-)). The results demonstrate that the acidic environment plays a significant role in controlling the chemistry of an iron-sulfur cluster with NO and imply how two important gaseous molecules, NO and H(2)S, can be interconnected through iron-sulfur clusters.


Assuntos
Compostos de Ferro/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Óxido Nítrico/metabolismo , Sulfetos/metabolismo , Compostos de Ferro/química , Proteínas Ferro-Enxofre/química , Sulfetos/química , Enxofre/química , Enxofre/metabolismo
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA