Experimental study of 112 Gb/s short reach transmission employing PAM formats and SiP intensity modulator at 1.3 µm.

We present a Silicon Photonic (SiP) intensity modulator operating at 1.3 µm with pulse amplitude modulation formats for short reach transmission employing a digital to analog converter for the RF signal generator, enabling pulse shaping and precompensation of the transmitter's frequency response. Details of the SiP Mach-Zehnder interfometer are presented. We study the system performance at various bit rates, PAM orders and propagation distances. To the best of our knowledge, we report the first demonstration of a 112 Gb/s transmission over 10 km of SMF fiber operating below pre-FEC BER threshold of 3.8 × 10(-3) employing PAM-8 at 37.4 Gbaud using a fully packaged SiP modulator. An analytical model for the Q-factor metric applicable for multilevel PAM-N signaling is derived and accurately experimentally verified in the case of Gaussian noise limited detection. System performance is experimentally investigated and it is demonstrated that PAM order selection can be optimally chosen as a function of the desired throughput. We demonstrate the ability of the proposed transmitter to exhibit software-defined transmission for short reach applications by selecting PAM order, symbol rate and pulse shape.

Analytical and experimental performance evaluation of an integrated Si-photonic balanced coherent receiver in a colorless scenario.

We study analytically and experimentally the performance limits of a Si-photonic (SiP) balanced coherent receiver (CRx) co-packaged with transimpedance amplifiers (TIAs) in a colorless WDM scheme. Firstly, the CRx architecture is depicted and characterization results are presented. Secondly, an analytical expression for the signal-to-noise ratio (SNR) at the CRx output is rigorously developed and various noise sources in the context of colorless reception are outlined. Thirdly, we study experimentally the system-level CRx performance in colorless reception of 16 × 112 Gbps PDM-QPSK WDM channels. Using a 15.5 dBm local oscillator (LO) power, error free transmissions over 4800 and 4160 km at received powers of -3 and -21 dBm per channel, respectively, were achieved in a fully colorless and preamplifierless reception. Next, a set of measurements on one of the center WDM channels is performed where the LO power, received signal power, distance, and number of channels presented to the CRx are swept to evaluate the performance limits of colorless reception. Results reveal that the LO beating with optical noise incoming with the signal is a dominant noise source regardless of received signal power. In the high received signal power regime (~0 dBm/channel), the self-beat noise from out-of-band (OOB) channels is an additional major noise source especially for small LO-to-signal power ratio, short reach and large number of OOB channels. For example, at a received signal power of 0 dBm/channel after 1600 km transmission, the SNR difference between the fully filtered and colorless scenarios, where 1 and 16 channels are passed to the CRx respectively, grows from 0.5 to 3.3 dB as the LO power changes from 12 to 0 dBm. For low received power (~-12 dBm/channel), the effect of OOB channels becomes minor while the receiver shot and thermal noises become more significant. We identify the common mode rejection ratio (CMRR) and sensitivity as the two important CRx specifications that impact the performance at high and low received signal power regimes, respectively. Finally, an excellent match between experimental and analytical SNRs is proven after the derived SNR model is fitted to the experimental data in a least-squares sense. The model is then used to predict that the CRx can operate colorlessly for a fully populated WDM spectrum with 80 channels provided that the LO-to-signal power ratio is properly set.

Hydrological modelling of Toxoplasma gondii oocysts transport to investigate contaminated snowmelt runoff as a potential source of infection for marine mammals in the Canadian Arctic.

Toxoplasma gondii (T. gondii) is a zoonotic protozoan that sometimes causes serious illness in humans and other animals worldwide, including the Canadian Arctic. Wild and domestic felids, the only hosts able to shed T. gondii oocysts, are practically non-existent in the Canadian Arctic. So here the hypothesis that T. gondii oocysts, shed in the southern areas of the boreal watershed, could contaminate the Arctic coastal marine environment via surface runoff, particularly during the spring snowmelt period, was explored. A watershed model was applied to simulate the hydrological transport of T. gondii oocysts during the snowmelt period and test the possible efficiency of river-to-sea transport as a potential source of marine organisms' exposure to this pathogen. Simulations were run for two pilot watersheds with the ultimate aim of extrapolating the results across the Canadian Arctic watersheds. Results suggest that daily stream flow concentrations of T. gondii oocysts at the river outlet are likely to be very low. However, accumulation of oocysts in the estuarine areas may be large enough to contaminate estuarine/marine filter-feeding molluscs and snails on which seals and other marine mammals may feed. Potential maximum concentrations of T. gondii oocysts in runoff are reached at the beginning of the snowmelt period with maxima varying with discharge rates into rivers and how far upstream oocysts are discharged. Meteorological conditions during the snowmelt period can affect simulated concentrations of oocysts. These findings support the hypothesis that T. gondii oocysts carried in snowmelt runoff could be a source of T. gondii infection for marine mammals in the Canadian Arctic, and for Arctic human populations that hunt and consume raw meat from marine mammals.

Three decades of Canadian marine harmful algal events: Phytoplankton and phycotoxins of concern to human and ecosystem health.

Spatial and temporal trends of marine harmful algal events in Canada over the last three decades were examined using data from the Harmful Algal Event Database (HAEDAT). This database contains the most complete record of algal blooms, phycotoxins and shellfish harvesting area closures in Canada since 1987. This 30-year review of 593 Canadian HAEDAT records from 1988 to 2017, together with other Canadian data and publications, shows that recurring harmful algal events have been widespread throughout both the Atlantic and Pacific coastal regions. The 367 paralytic shellfish toxin (PST) reports revealed annual and frequent recurrence throughout both the Atlantic and Pacific regions, including multi-year PST events in the Bay of Fundy, the Estuary and Gulf of St. Lawrence and the Strait of Georgia. The 70 amnesic shellfish toxin (AST) records revealed no recognizable trend, as these events were usually area specific and did not recur annually. The increasing frequency of diarrhetic shellfish toxin (DST) events over the period of this review, in total 59 records, can be at least partially explained by increased sampling effort. Marine species mortalities caused by harmful algae (including diatoms, dictyochophytes, dinoflagellates, and raphidophytes), were a common occurrence in the Pacific region (87 reports), but have been reported much less frequently in the Atlantic region (10 reports). Notable Canadian records contained in HAEDAT include the first detection worldwide of amnesic shellfish poisoning (ASP), attributed to the production of domoic acid (an AST) by a diatom (Pseudo-nitzschia multiseries) in Prince Edward Island in 1987. The first proven case of diarrhetic shellfish poisoning (DSP) in Canada and North America was recorded in 1990, and the first closures of shellfish harvesting due to DST (associated with the presence of Dinophysis norvegica) occurred in Nova Scotia in 1992, followed by closures in Newfoundland and Labrador in 1993. In 2008, mass mortalities of fishes, birds and mammals in the St. Lawrence Estuary were caused by Alexandrium catenella and high levels of PST. During 2015, the Pacific coast experienced a large algal bloom that extended from California to Alaska. It resulted in the closure of several shellfish harvesting areas in British Columbia due to AST, produced by Pseudo-nitzschia australis. Data from the Canadian Arctic coast is not included in HAEDAT. However, because of the emerging importance of climate change and increased vessel traffic in the Arctic, information on the occurrence of harmful algal species (pelagic and sympagic = sea ice-associated) in that region was compiled from relevant literature and data. The results suggest that these taxa may be more widespread than previously thought in the Canadian Arctic. Information in HAEDAT was not always robust or complete enough to provide conclusions about temporal trends. Compilation of spatial and temporal information from HAEDAT and other records is nevertheless important for evaluating the potential role of harmful algae as a stressor on Canadian marine ecosystems, and will support the next step: developing a knowledge gap analysis that will establish research priorities for determining their consequences on human and ecosystem health.

Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms.

Specimens of a new species of blue diatoms from the genus Haslea Simonsen were discovered in geographically distant sampling sites, first in the Canary Archipelago, then North Carolina, Gulf of Naples, the Croatian South Adriatic Sea, and Turkish coast of the Eastern Mediterranean Sea. An exhaustive characterization of these specimens, using a combined morphological and genomic approach led to the conclusion that they belong to a single new to science cosmopolitan species, Haslea silbo sp. nov. A preliminary characterization of its blue pigment shows similarities to marennine produced by Haslea ostrearia, as evidenced by UV-visible spectrophotometry and Raman spectrometry. Life cycle stages including auxosporulation were also observed, providing data on the cardinal points of this species. For the two most geographically distant populations (North Carolina and East Mediterranean), complete mitochondrial and plastid genomes were sequenced. The mitogenomes of both strains share a rare atp6 pseudogene, but the number, nature, and positions of the group II introns inside its cox1 gene differ between the two populations. There are also two pairs of genes fused in single ORFs. The plastid genomes are characterized by large regions of recombination with plasmid DNA, which are in both cases located between the ycf35 and psbA genes, but whose content differs between the strains. The two sequenced strains hosts three plasmids coding for putative serine recombinase protein whose sequences are compared, and four out of six of these plasmids were highly conserved.

Geographical variation of Crohn's disease residual incidence in the Province of Quebec, Canada.

BACKGROUND: Crohn's disease (CD) is clinically expressed as a chronic affection of the gastrointestinal tract currently known to have a multifactorial etiology involving a complex pathophysiological host response modulated by genetic susceptibilities, demographic determinants and environmental factors. With more than 20 cases per 100,000 person-years, the province of Quebec, Canada is among regions of the world with highest reported occurrence of CD in relation to other places where comparable estimates are available. This ecological study was designed to provide a medium-scale spatial exploration of CD incidence after accounting for the influence of known population and regional determinants. Health records of consulting patients in southern Quebec were compiled from 1995 to 2000 and used to estimate age and sex standardized rates per health area (n = 156). Various statistical models taking into account the regional effect of Jewish ethnicity, aboriginal ancestry, material deprivation, prescription for oral contraceptives, reportable enteric infection incidence, smoking as well as latitude and longitude locations were fitted. RESULTS: The final regression model presented a coefficient of determination of 22.8% and there was evidence of an eastern trend in the residual incidence (p = 0.018). Overall, the smoothed residual incidence presented a heterogeneous spatial pattern with evidence of patches (multiple health areas) of high, low and contrasting values. Health areas with most extreme incidence residuals where also distributed over the whole province including one area in the metropolitan area of Montreal and others in surrounding areas. CONCLUSIONS: These findings suggest that known populational and regional factors derived through census information only explain a limited fraction of the geographical variation of CD incidence and lead to speculate that the effects of these factors may be incompletely captured (imperfect construction of proxy variables) or that other important factors remain unmeasured. In this view, markers of genetic profiles of homogeneous sub-populations, and other factors linked to agroenvironmental microbial exposure should be further investigated. Once accounting for known factors, it would also be worth comparing adjacent geographical areas demonstrating abrupt changes in residual incidence rates to further explore effect linked to regional factors from those resulting from various reporting systems.

Performance of balanced detection in a coherent receiver.

The quality of balanced detection in a coherent receiver is analyzed theoretically and experimentally. The impact of the characteristics of the optics on the balanced detection is presented. A parameter that characterizes the performance of the balanced detection suitable for the whole optical front-end is propose.

Risk maps for range expansion of the Lyme disease vector, Ixodes scapularis, in Canada now and with climate change.

BACKGROUND: Lyme disease is the commonest vector-borne zoonosis in the temperate world, and an emerging infectious disease in Canada due to expansion of the geographic range of the tick vector Ixodes scapularis. Studies suggest that climate change will accelerate Lyme disease emergence by enhancing climatic suitability for I. scapularis. Risk maps will help to meet the public health challenge of Lyme disease by allowing targeting of surveillance and intervention activities. RESULTS: A risk map for possible Lyme endemicity was created using a simple risk algorithm for occurrence of I. scapularis populations. The algorithm was calculated for each census sub-division in central and eastern Canada from interpolated output of a temperature-driven simulation model of I. scapularis populations and an index of tick immigration. The latter was calculated from estimates of tick dispersion distances by migratory birds and recent knowledge of the current geographic range of endemic I. scapularis populations. The index of tick immigration closely predicted passive surveillance data on I. scapularis occurrence, and the risk algorithm was a significant predictor of the occurrence of I. scapularis populations in a prospective field study. Risk maps for I. scapularis occurrence in Canada under future projected climate (in the 2020s, 2050s and 2080s) were produced using temperature output from the Canadian Coupled Global Climate Model 2 with greenhouse gas emission scenario enforcing 'A2' of the Intergovernmental Panel on Climate Change. CONCLUSION: We have prepared risk maps for the occurrence of I. scapularis in eastern and central Canada under current and future projected climate. Validation of the risk maps provides some confidence that they provide a useful first step in predicting the occurrence of I. scapularis populations, and directing public health objectives in minimizing risk from Lyme disease. Further field studies are needed, however, to continue validation and refinement of the risk maps.

Relationship of trade patterns of the Danish swine industry animal movements network to potential disease spread.

The movements of animals were analysed under the conceptual framework of graph theory in mathematics. The swine production related premises of Denmark were considered to constitute the nodes of a network and the links were the animal movements. In this framework, each farm will have a network of other premises to which it will be linked. A premise was a farm (breeding, rearing or slaughter pig), an abattoir or a trade market. The overall network was divided in premise specific subnets that linked the other premises from and to which animals were moved. This approach allowed us to visualise and analyse the three levels of organization related to animal movements that existed in the Danish swine production registers: the movement of animals between two premises, the premise specific networks, and the industry network. The analyses of animal movements were done using these three levels of organisation. The movements of swine were studied for the period September 30, 2002 to May 22, 2003. For daily movements of swine between two slaughter pig premises, the median number of pigs moved was 130 pigs with a maximum of 3306. For movements between a slaughter pig premise and an abattoir, the median number of pigs was 24. The largest percentage of movements was from farm to abattoir (82.5%); the median number of pigs per movement was 24 and the maximum number was 2018. For the whole period the median and maximum Euclidean distances observed in farm-to-farm movements were 22 km and 289 km respectively, while in the farm-to-abattoir movements, they were 36.2 km and 285 km. The network related to one specific premise showed that the median number of premises was mainly away from slaughter pig farms (3) or breeder farms (26) and mainly to an abattoir (1535). The assumption that animal movements can be randomly generated on the basis of farm density of the surrounding area of any farm is not correct since the patterns of animal movements have the topology of a scale-free network with a large degree of heterogeneity. This supported the opinion that the disease spread software assuming homogeneity in farm-to-farm relationship should only be used for large-scale interpretation and for epidemic preparedness. The network approach, based on graph theory, can be used efficiently to express more precisely, on a local scale (premise), the heterogeneity of animal movements. This approach, by providing network knowledge to the local veterinarian in charge of controlling disease spread, should also be evaluated as a potential tool to manage epidemics during the crisis. Geographic information systems could also be linked in the approach to produce knowledge about local transmission of disease.

Assessment of nitrate pollution in the Grand Morin aquifers (France): combined use of geostatistics and physically based modeling.

The objective of this work is to combine several approaches to better understand nitrate fate in the Grand Morin aquifers (2700 km(2)), part of the Seine basin. cawaqs results from the coupling of the hydrogeological model newsam with the hydrodynamic and biogeochemical model of river ProSe. cawaqs is coupled with the agronomic model Stics in order to simulate nitrate migration in basins. First, kriging provides a satisfactory representation of aquifer nitrate contamination from local observations, to set initial conditions for the physically based model. Then associated confidence intervals, derived from data using geostatistics, are used to validate cawaqs results. Results and evaluation obtained from the combination of these approaches are given (period 1977-1988). Then cawaqs is used to simulate nitrate fate for a 20-year period (1977-1996). The mean nitrate concentrations increase in aquifers is 0.09 mgN L(-1)yr(-1), resulting from an average infiltration flux of 3500 kgN.km(-2)yr(-1).

Modeling nitrate fluxes at the catchment scale using the integrated tool CAWAQS.

Nitrates fluxes in the Grand Morin basin (1200 km(2)), that is subjected to intense agricultural pressure, are considered using in-stream observations (around 250 sampling days over 5 years) and physically based simulations using the CAWAQS model (CAtchment WAter Quality Simulator). In-stream nitrate concentration averaged 6 mg N L(-1), increasing by approximately 0.2 mg N L(-1) yr(-1) around this value (period 1991-1996). Our results show that, over the period of 1991-1996, the differences between in-stream observed nitrate concentrations and simulated nitrate concentrations result from nitrate losses at the basin scale. These losses are due to denitrification by transfer through wetlands, alluvial plains, the hyporheic zone, and by benthic processes in rivers. A mean annual mass balance at the basin scale indicates that 40% of the infiltration flux (3360 kg N km(-2) yr(-1)) is removed from the system via the river network, 40% is stored in aquifers and 20% is lost by denitrification (period 1991-1996).

Primary production in headwater streams of the Seine basin: the Grand Morin river case study.

Periphytic biomass has an important influence on the water quality of many shallow streams. The purpose of this paper is to synthesize the knowledge obtained on periphyton during the PIREN Seine research program. Periphyton was sampled using chl a measurements by acetone extraction and oxygen measurements with microelectrodes. The experiments reveal the presence of an important fixed biomass ranging between 123 and 850 mgchl a m(-2) and the mean gross production (photosynthesis) is shown to range between 180 and 315 mgC m(-2) h(-1). An independent approach was performed using the ProSe model, which simulates transport and biogeochemical processes in 22 km of the Grand Morin stream. A strong agreement between in situ measurements and the model results was obtained. The gross production obtained using ProSe is 220 mgC m(-2) h(-1) for the periphyton, which matches the experimental data. Although the net photosynthetic activity of the phytoplankton (0.84 gC gC(-1) d(-1)) is higher than the periphytic one (0.33 gC gC(-1) d(-1)), the absolute periphytic activity is greater since the mean biomass (3.4 gC m(-)(2)) is 10 times higher than the phytoplanktonic one (0.3 gC m(-2)), due to the short residence time of the water body (1.5d).

Modelling the impacts of Combined Sewer Overflows on the river Seine water quality.

To achieve the objectives of the European Water Framework Directive (EWFD), the Seine basin Water Authority has constructed a number of prospective scenarios forecasting the impact of planned investments in water quality. Paris and its suburbs were given special attention because of their impact on the river Seine. Paris sewer system and overflow control is of major concern in future management plans. The composition and fate of the urban effluents have been characterized through numerous in situ samplings, laboratory experiments and modelling studies. The PROSE model was especially designed to simulate the impact on the river of both permanent dry-weather effluents and of highly transient Combined Sewer Overflow (CSO). It was also used to represent the impact of Paris at large spatial and temporal scales. In addition to immediate effects on oxygen levels, heavy particulate organic matter loads that settle downstream of the outlets contribute to permanent oxygen consumption. Until the late 90s, the 50 km long reach of the Seine inside Paris was permanently affected by high oxygen consumption accounting for 112% of the flux upstream of the city. 20% of this demand resulted from CSO. However, the oxygenation of the system is strong due to high phytoplankton activity. As expected, the model results predict a reduction of both permanent dry-weather effluents and CSOs in the future that will greatly improve the oxygen levels (concentrations higher than 7.3 mgO(2) L(-1), 90% of the time instead of 4.0 mgO(2) L(-1) in the late 90s). The main conclusion is that, given the spatial and temporal extent of the impact of many CSOs, water quality models should take into account the CSOs in order to be reliable.

New tools for modelling water quality of hydrosystems: an application in the Seine River basin in the frame of the Water Framework Directive.

The implementation of the European Water Framework Directive requires new tools for predicting the effect of expected measures taken in the watershed on water quality at the scale of large regional river systems. In the Seine basin, four models, developed in a research context, have been chained to each other to simulate water quality and biogeochemical functioning of the hydrosystem from headwater streams to the coastal marine area. All four models are based on a similar deterministic approach and share a common description of the biogeochemical processes, allowing them to exchange information. Each model differently represents the hydro-sedimentological processes, and uses different time and space resolution, in order to tackle with the specific problematic of each sub-system. This cascade of models has been used for testing a prospective scenario of water resources management at the horizon of 2015, established by Water Authorities of the Seine-Normandy district. The simulation predicts a general improvement of water quality concerning those variables linked to point sources of pollution (ammonium, oxygen, phosphate), even if, locally, this improvement can be insufficient for meeting the expected quality standards. The predicted improvement of the quality of the Seine River downstream from Paris and its estuary is large. However, the predicted very significant drop of phosphate contamination, although beneficial for limiting the problems of coastal marine eutrophication, does not lead to a significant control of phytoplankton development in the rivers upstream from Paris. The simulation also predicts a general increase in nitrate contamination mainly linked to diffuse sources from agricultural areas.

Phylogenetic Relationships and Biogeography of the Diatom Genus Mastogloia (Bacillariophyceae): Revision of the Section Ellipticae Including the Description of New Taxa.

Benthic diatoms represent an important component of aquatic ecosystems, both for their contribution to primary production and their role in the marine food web. Mastogloia is a large, mostly marine diatom genus occurring in microphytobenthic communities of temperate to tropical coastal regions. In this study, the phylogenetic relationships, based on cladistic methodologies using morphological features, among all taxa belonging to the genus Mastogloia section Ellipticae (i.e., 33 taxa) were investigated using the parsimony method. The character states that describe variations of central area, raphe, areola vela and partectal position have a tendency to be very homologous and useful in recovering phylogenies. The typical character states of this section, such as rounded apices represents an ancestral homology. The phylogenetic hypothesis supports the probable monophyletic origin of the section Ellipticae (synapomorphy). Moreover, we completed the taxonomical review of the section Ellipticae, with the description of seven species, M. cocconeiformis, M. cribrosa, M. fimbriata, M. ovata, M. pseudolatecostata, and of two species new to science, M. rosalbae and M. aegyptiaca. Finally, this study provides historical and new information on the geographical distribution of Mastogloia species.

Pluri-annual sediment budget in a navigated river system: the Seine River (France).

This study aims at quantifying pluri-annual Total Suspended Matter (TSM) budgets, and notably the share of river navigation in total re-suspension at a long-term scale, in the Seine River along a 225 km stretch including the Paris area. Erosion is calculated based on the transport capacity concept with an additional term for the energy dissipated by river navigation. Erosion processes are fitted for the 2007-2011 period based on i) a hydrological typology of sedimentary processes and ii) a simultaneous calibration and retrospective validation procedure. The correlation between observed and simulated TSM concentrations is higher than 0.91 at all monitoring stations. A variographic analysis points out the possible sources of discrepancies between the variabilities of observed and simulated TSM concentrations at three time scales: sub-weekly, monthly and seasonally. Most of the error on the variability of simulated concentrations concerns sub-weekly variations and may be caused by boundary condition estimates rather than modeling of in-river processes. Once fitted, the model permits to quantify that only a small fraction of the TSM flux sediments onto the river bed (<0.3‰). The river navigation contributes significantly to TSM re-suspension in average (about 20%) and during low flow periods (over 50%). Given the significant impact that sedimentary processes can have on the water quality of rivers, these results highlight the importance of taking into account river navigation as a source of re-suspension, especially during low flow periods when biogeochemical processes are the most intense.

Development of agroenvironmental indicators to evaluate the hygienic pressure of livestock production on human health.

Infections by enteropathogenic microorganisms linked to agroenvironmental contamination represent a significant threat to urban and rural communities. To better characterize and manage this risk, it is necessary, not only to accurately describe enteric illnesses occurring over time or across regions, but also to correctly assess exposure attributable to this environmental pollution. New agroenvironmental hygienic pressure indicators (AHPIs) were developed to synthesise relevant data expressing this exposure. They were derived from a conceptual framework for developing sustainable agriculture indicators and specifically adapted for describing the microbial risk of water contamination by livestock operations. The proposed indicators include two components, and five attributes whose values are calculated at the livestock operation level from a set of available data related to the fields of microbiology, animal production, agronomy, hydrology, and meteorology. They are then aggregated at a higher geographical level to better express exposure of human populations to potential of water contamination by zoonotic enteropathogens. The indicators are calculated separately by zoonotic enteropathogens, and by water source (surface or groundwater). They take into account the various animal species within each livestock operation. When validated, the proposed indicators will allow decision-makers and public health officials to better manage crucial issues in the area of water safety and agriculture.

Large, omega-3 rich, pelagic diatoms under Arctic sea ice: sources and implications for food webs.

Pelagic primary production in Arctic seas has traditionally been viewed as biologically insignificant until after the ice breakup. There is growing evidence however, that under-ice blooms of pelagic phytoplankton may be a recurrent occurrence. During the springs of 2011 and 2012, we found substantial numbers (201-5713 cells m-3) of the large centric diatom (diameter >250 µm) Coscinodiscus centralis under the sea ice in the Canadian Arctic Archipelago near Resolute Bay, Nunavut. The highest numbers of these pelagic diatoms were observed in Barrow Strait. Spatial patterns of fatty acid profiles and stable isotopes indicated two source populations for C. centralis: a western origin with low light conditions and high nutrients, and a northern origin with lower nutrient levels and higher irradiances. Fatty acid analysis revealed that pelagic diatoms had significantly higher levels of polyunsaturated fatty acids (mean ± SD: 50.3 ± 8.9%) compared to ice-associated producers (30.6 ± 10.3%) in our study area. In particular, C. centralis had significantly greater proportions of the long chain omega-3 fatty acid, eicosapentaenoic acid (EPA), than ice algae (24.4 ± 5.1% versus 13.7 ± 5.1%, respectively). Thus, C. centralis represented a significantly higher quality food source for local herbivores than ice algae, although feeding experiments did not show clear evidence of copepod grazing on C. centralis. Our results suggest that C. centralis are able to initiate growth under pack ice in this area and provide further evidence that biological productivity in ice-covered seas may be substantially higher than previously recognized.

Fate and transport of Toxoplasma gondii oocysts in seasonally snow covered watersheds: a conceptual framework from a melting snowpack to the Canadian arctic coasts.

Toxoplasma gondii is a zoonotic protozoan that causes serious illness in humans and infects animals worldwide, including the Canadian Arctic. Indeed, high prevalence of infection amongst Inuit has been recorded, possibly due to consumption of raw infected seal meat. Here we explore the hypothesis that T. gondii oocysts contaminate the coastal marine environment via surface runoff from across the boreal watershed, particularly during the snowmelt period. We propose a conceptual framework of the different processes governing the fate and transport of T. gondii oocysts from the melting snowpack to the Canadian arctic coast via the freshwater runoff. This framework identifies the feasibility of a transmission pathway of oocysts from contaminated soil to the marine environment, but also the complexity and multiplicity of mechanisms involved. In addition, the framework identifies knowledge gaps for guiding future studies on T. gondii oocysts. Furthermore, this work could be used as a tool to investigate the possible estuarine contamination by other faeces-borne pathogens transported via the spring freshet in seasonally snow covered watersheds.

Spatiotemporal dynamics of Toxoplasma gondii infection in Canadian lynx (Lynx canadensis) in western Québec, Canada.

Toxoplasma gondii, one of the more common zoonotic parasites in the world, can cause serious illness in humans and other animals worldwide. Felids are the only known host that can shed T. gondii oocysts, which are essential to the perpetuation of the parasite. In much of boreal Canada, the Canadian lynx (Lynx canadensis) is the only wild felid host that could contribute to environmental contamination with T. gondii oocysts. We estimated the prevalence of T. gondii antibodies in Canadian lynx from western Québec and compared our results with earlier findings in the same region 12 yr earlier. We investigated factors associated with seroconversion, including age, sex, geographic location, and possible co-occurrence with domestic cats (Felis catus), and we assessed the proportion of lynx shedding T. gondii oocysts. Blood and fecal samples were collected from 84 lynx harvested by trappers in the eastern part of the study area during winter 2009-2010. Sera were tested for antibodies to T. gondii by the modified agglutination test (cutoff titer 1:50) and fecal samples for parasite eggs by fecal flotation. Antibodies to T. gondii were detected in sera of 14% of 84 lynx. Numerous helminth ova and coccidian oocysts were found in feces, whereas T. gondii-like oocysts were not detected. Antibody prevalence increased with age class (odds ratio [OR]=4.33, 95% confidence interval [CI]=1.57-11.99, P<0.01). Antibody prevalence (14%) in our study was significantly lower than in 84 lynx (36%) trapped in the western part of the study area during winter 1997-1998 (OR=0.18, 95% CI=0.08-0.44, P<0.001). Our results suggest there may be significant spatiotemporal dynamics of T. gondii infection in lynx in Canada, and we review possible abiotic and biotic ecologic factors supporting these findings.