Emerging Scientific Approaches for Identifying Ecologically Adverse Effects of Air Pollution.

Now more than ever, complex socio-ecological challenges require timely and integrated responses from scientists and policymakers. Air quality is one such challenge. Under the Clean Air Act, the U.S. Environmental Protection Agency establishes ambient air quality standards to protect public welfare from known or anticipated adverse effects of air pollutants. As our understanding of the environment and awareness of social values grow, there is a need to improve characterization of "adversity to the public welfare." Scientific assessment can link ecological effects to public welfare using modern scientific approaches that incorporate ecological complexity and multiple value systems held by the public. We propose ideas for the future of scientific assessments meant to inform air quality and other environmental decision-making, including concrete ways we can focus on vulnerable species and ecosystems, incorporate a multiplicity of values, climate and multiple stressors, and partner to diversify the knowledge upon which protective policies are based.

BIOTA CONNECT AQUATIC HABITATS THROUGHOUT FRESHWATER ECOSYSTEM MOSAICS.

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.

Secondary Structure and Glycosylation of Mucus Glycoproteins by Raman Spectroscopies.

The major structural components of protective mucus hydrogels on mucosal surfaces are the secreted polymeric gel-forming mucins. The very high molecular weight and extensive O-glycosylation of gel-forming mucins, which are key to their viscoelastic properties, create problems when studying mucins using conventional biochemical/structural techniques. Thus, key structural information, such as the secondary structure of the various mucin subdomains, and glycosylation patterns along individual molecules, remains to be elucidated. Here, we utilized Raman spectroscopy, Raman optical activity (ROA), circular dichroism (CD), and tip-enhanced Raman spectroscopy (TERS) to study the structure of the secreted polymeric gel-forming mucin MUC5B. ROA indicated that the protein backbone of MUC5B is dominated by unordered conformation, which was found to originate from the heavily glycosylated central mucin domain by isolation of MUC5B O-glycan-rich regions. In sharp contrast, recombinant proteins of the N-terminal region of MUC5B (D1-D2-D'-D3 domains, NT5B), C-terminal region of MUC5B (D4-B-C-CK domains, CT5B) and the Cys-domain (within the central mucin domain of MUC5B) were found to be dominated by the ß-sheet. Using these findings, we employed TERS, which combines the chemical specificity of Raman spectroscopy with the spatial resolution of atomic force microscopy to study the secondary structure along 90 nm of an individual MUC5B molecule. Interestingly, the molecule was found to contain a large amount of α-helix/unordered structures and many signatures of glycosylation, pointing to a highly O-glycosylated region on the mucin.

Biofuels: network analysis of the literature reveals key environmental and economic unknowns.

Despite rapid growth in biofuel production worldwide, it is uncertain whether decision-makers possess sufficient information to fully evaluate the impacts of the industry and avoid unintended consequences. Doing so requires rigorous peer-reviewed data and analyses across the entire range of direct and indirect effects. To assess the coverage of scientific research, we analyzed over 1600 peer-reviewed articles published between 2000 and 2009 that addressed 23 biofuels-related topics within four thematic areas: environment and human well-being, economics, technology, and geography. Greenhouse gases, fuel production, and feedstock production were well-represented in the literature, while trade, biodiversity, and human health were not. Gaps were especially striking across topics in the Southern Hemisphere, where the greatest potential socio-economic benefits, as well as environmental damages, may co-occur. There was strong asymmetry in the connectedness of research topics; greenhouse gases articles were twice as often connected to other topics as biodiversity articles. This could undermine the ability of scientific and economic analyses to adequately evaluate impacts and avoid significant unintended consequences. At the least, our review suggests caution in this developing industry and the need to pursue more interdisciplinary research to assess complex trade-offs and feedbacks inherent to an industry with wide-reaching potential impacts.

Longitudinal analysis of Plantago: age-by-environment interactions reveal aging.

We know very little about aging (senescence) in natural populations, and even less about plant aging. Demographic aging is identified by an increasing rate of mortality following reproductive maturity. In natural populations, quantifying aging is often confounded because changes in mortality may be influenced by both short- and long-term environmental fluctuations as well as age-dependent changes in performance. Plants can be easily marked and monitored longitudinally in natural populations yet the age-dependent dynamics of mortality are not known. This study was designed to determine whether a plant species, Plantago lanceolata, shows demographic aging in its natural environment. A large, multiple-cohort design was used to separate age-independent and age-dependent processes. Seven years of results show environmental influences on mortality as evidenced by synchronous changes in mortality across four cohorts over time. Age-dependent mortality was found through an age-by-environment interaction when the oldest cohorts had significantly higher mortality relative to the younger cohorts during times of stress. Neither size nor quantity of reproduction could explain this variation in mortality across cohorts. These results demonstrate demographic senescence in a natural population of plants.

A glycopolymer improves vascoelasticity and mucociliary transport of abnormal cystic fibrosis mucus.

Cystic fibrosis (CF) is characterized by increased mucus viscosity and delayed mucociliary clearance that contributes to progressive decline of lung function. Mucus in the respiratory and GI tract is excessively adhesive in the presence of airway dehydration and excess extracellular Ca2+ upon mucin release, promoting hyperviscous, densely packed mucins characteristic of CF. Therapies that target mucins directly through ionic interactions remain unexploited. Here we show that poly (acetyl, arginyl) glucosamine (PAAG), a polycationic biopolymer suitable for human use, interacts directly with mucins in a Ca2+-sensitive manner to reduce CF mucus viscoelasticity and improve its transport. Notably, PAAG induced a linear structure of purified MUC5B and altered its sedimentation profile and viscosity, indicative of proper mucin expansion. In vivo, PAAG nebulization improved mucociliary transport in CF rats with delayed mucus clearance, and cleared mucus plugging in CF ferrets. This study demonstrates the potential use of a synthetic glycopolymer PAAG as a molecular agent that could benefit patients with a broad array of mucus diseases.

Weed evolution after crop gene introgression: greater survival and fecundity of hybrids in a new environment.

Crop-wild hybridization may produce offspring with lower fitness than their wild parents due to deleterious crop traits and outbreeding depression. Over time, however, selection for improved fitness could lead to greater invasiveness of hybrid taxa. To examine evolutionary change in crop-wild hybrids, we established four wild (Raphanus raphanistrum) and four hybrid radish populations (R. raphanistrum x Raphanus sativus) in Michigan (MI), USA. Hybrid and wild populations had similar growth rates over four generations, and pollen fertility of hybrids improved. We then measured hybrid and wild fitness components in two common garden sites within the geographical range of wild radish [MI and California (CA)]. Advanced generation hybrids had slightly lower lifetime fecundity than wild plants in MI but exhibited c. 270% greater lifetime fecundity and c. 22% greater survival than wild plants in CA. Our results support the hypothesis that crop-wild hybridization may create genotypes with the potential to displace parental taxa in new environments.

Applying gene flow science to environmental policy needs: a boundary work perspective.

One application of gene flow science is the policy arena. In this article, we describe two examples in which the topic of gene flow has entered into the U.S. national environmental policymaking process: regulation of genetically engineered crops and clarification of the jurisdictional scope of the Clean Water Act. We summarize both current scientific understanding and the legal context within which gene flow science has relevance. We also discuss the process by which scientific knowledge has been synthesized and communicated to decision-makers in these two contexts utilizing the concept of 'boundary work'. Boundary organizations, the work they engage in to bridge the worlds of science, policy, and practice, and the boundary objects they produce to translate scientific knowledge existed in both examples. However, the specific activities and attributes of the objects produced varied based on the needs of the decision-makers. We close with suggestions for how scientists can contribute to or engage in boundary work with policymakers.

Reorganisation of the salivary mucin network by dietary components: insights from green tea polyphenols.

The salivary mucins that include MUC5B (gel-forming) and MUC7 (non-gel-forming) are major contributors to the protective mucus barrier in the oral cavity, and it is possible that dietary components may influence barrier properties. We show how one dietary compound, the green tea polyphenol epigallocatechin gallate (EGCG), can substantially alter the properties of both the polymeric MUC5B network and monomeric MUC7. Using rate-zonal centrifugation, MUC5B in human whole saliva and MUC5B purified from saliva sedimented faster in the presence of EGCG. The faster sedimentation by EGCG was shown to be greater with increasing MUC5B concentration. Particle tracking microrheology was employed to determine the viscosity of purified MUC5B solutions and showed that for MUC5B solutions of 200-1600 µg/mL, EGCG caused a significant increase in mucin viscosity, which was greater at higher MUC5B concentrations. Visualisation of the changes to the MUC5B network by EGCG was performed using atomic force microscopy, which demonstrated increased aggregation of MUC5B in a heterogeneous manner by EGCG. Using trypsin-resistant, high-molecular weight oligosaccharide-rich regions of MUC5B and recombinant N-terminal and C-terminal MUC5B proteins, we showed that EGCG causes aggregation at the protein domains of MUC5B, but not at the oligosaccharide-rich regions of the mucin. We also demonstrated that EGCG caused the majority of MUC7 in human whole saliva to aggregate. Furthermore, purified MUC7 also underwent a large increase in sedimentation rate in the presence of EGCG. In contrast, the green tea polyphenol epicatechin caused no change in the sedimentation rate of either MUC5B or MUC7 in human whole saliva. These findings have demonstrated how the properties of the mucin barrier can be influenced by dietary components. In the case of EGCG, these interactions may alter the function of MUC5B as a lubricant, contributing to the astringency (dry puckering sensation) of green tea.

The effect of plant inbreeding and stoichiometry on interactions with herbivores in nature: Echinacea angustifolia and its specialist aphid.

Fragmentation of once widespread communities may alter interspecific interactions by changing genetic composition of interacting populations as well as their abundances and spatial distributions. In a long-term study of a fragmented population of Echinacea angustifolia, a perennial plant native to the North American prairie, we investigated influences on its interaction with a specialist aphid and tending ants. We grew plant progeny of sib-matings (I), and of random pairings within (W) and between (B) seven remnants in a common field within 8 km of the source remnants. During the fifth growing season, we determined each plant's burden of aphids and ants, as well as its size and foliar elemental composition (C, N, P). We also assayed composition (C, N) of aphids and ants. Early in the season, progeny from genotypic classes B and I were twice as likely to harbor aphids, and in greater abundance, than genotypic class W; aphid loads were inversely related to foliar concentration of P and positively related to leaf N and plant size. At the end of the season, aphid loads were indistinguishable among genotypic classes. Ant abundance tracked aphid abundance throughout the season but showed no direct relationship with plant traits. Through its potential to alter the genotypic composition of remnant populations of Echinacea, fragmentation can increase Echinacea's susceptibility to herbivory by its specialist aphid and, in turn, perturb the abundance and distribution of aphids.

Rapid evolution of morphology and adaptive life history in the invasive California wild radish (Raphanus sativus) and the implications for management.

Understanding the evolution and demography of invasive populations may be key for successful management. In this study, we test whether or not populations of the non-native, hybrid-derived California wild radish have regionally adapted to divergent climates over their 150-year history in California and determine if population demographic dynamics might warrant different region-specific strategies for control. Using a reciprocal transplant approach, we found evidence for genetically based differences both between and among northern, coastal and southern, inland populations of wild radish. Individual fitness was analyzed using a relatively new statistical method called 'aster modeling' which integrates temporally sequential fitness measurements. In their respective home environments, fitness differences strongly favored southern populations and only slightly favored northern populations. Demographic rates of transition and sensitivities also differed between regions of origin, suggesting that the most effective approach for reducing overall population growth rate would be to target different life-history stages in each region.

Biparental inbreeding and interremnant mating in a perennial prairie plant: fitness consequences for progeny in their first eight years.

Despite fundamental importance to population dynamics, mating system evolution, and conservation management, the fitness consequences of breeding patterns in natural settings are rarely directly and rigorously evaluated. We experimentally crossed Echinacea angustifolia, a widespread, perennial prairie plant undergoing radical changes in distribution and abundance due to habitat fragmentation. We quantified the effects of both biparental inbreeding and crossing between remnant populations on progeny survival and reproduction in the field over the first eight years. Lifetime fitness is notoriously difficult to assess particularly for iteroparous species because of the long sequence and episodic nature of selection events. Even with fitness data in hand, analysis is typically plagued by nonnormal distributions of overall fitness that violate the assumptions of the usual parametric statistical approaches. We applied aster modeling, which integrates the measurements of separate, sequential, nonnormally distributed annual fitness components, and estimated current biparental inbreeding depression at 68% in progeny of sibling-mating. The effect of between-remnant crossing on fitness was negligible. Given that relatedness among individuals in remnant populations is already high and dispersal very limited, inbreeding depression may profoundly affect future dynamics and persistence of these populations, as well as their genetic composition.

Crops gone wild: evolution of weeds and invasives from domesticated ancestors.

The evolution of problematic plants, both weeds and invasives, is a topic of increasing interest. Plants that have evolved from domesticated ancestors have certain advantages for study. Because of their economic importance, domesticated plants are generally well-characterized and readily available for ecogenetic comparison with their wild descendants. Thus, the evolutionary history of crop descendants has the potential to be reconstructed in some detail. Furthermore, growing crop progenitors with their problematic descendants in a common environment allows for the identification of significant evolutionary differences that correlate with weediness or invasiveness. We sought well-established examples of invasives and weeds for which genetic and/or ethnobotanical evidence has confirmed their evolution from domesticates. We found surprisingly few cases, only 13. We examine our list for generalizations and then some selected cases to reveal how plant pests have evolved from domesticates. Despite their potential utility, crop descendants remain underexploited for evolutionary study. Promising evolutionary research opportunities for these systems are abundant and worthy of pursuit.

Bidirectional history of hybridization in California wild radish, Raphanus sativus (Brassicaceae), as revealed by chloroplast DNA.

The evolutionary processes that take place in invasive plant populations are not well documented or understood. Interspecific hybridization between cultivated radish (Raphanus sativus) and R. raphanistrum is known to be responsible for the origin of the invasive California wild radish, but little is known about the nature of the hybridization events that produced the hybrid-derived lineage. We analyzed the trnL-rpl32 intergenic region of chloroplast DNA (cpDNA) obtained from 37 cultivated radish individuals from four different cultivars, 53 R. raphanistrum individuals from six European populations and 104 California wild radish individuals from 11 populations covering its entire range throughout the state. We found that cultivated radish and R. raphanistrum shared no cpDNA haplotypes but that they both shared haplotypes with California wild radish, evidence for bidirectional hybridization between the progenitor species in the creation of the California lineage. We also found evidence that multiple cultivars and multiple European source populations contributed to the diversity of cpDNA haplotypes within California. Studies like this will continue to be important for our understanding of the origin of invasive populations and the mechanisms by which they succeed.

Population size and relatedness affect fitness of a self-incompatible invasive plant.

One of the lingering paradoxes in invasion biology is how founder populations of an introduced species are able to overcome the limitations of small size and, in a "reversal of fortune," proliferate in a new habitat. The transition from colonist to invader is especially enigmatic for self-incompatible species, which must find a mate to reproduce. In small populations, the inability to find a mate can result in the Allee effect, a positive relationship between individual fitness and population size or density. Theoretically, the Allee effect should be common in founder populations of self-incompatible colonizing species and may account for the high rate of failed introductions, but little supporting evidence exists. We created a field experiment to test whether the Allee effect affects the maternal fitness of a self-incompatible invasive species, wild radish (Raphanus sativus). We created populations of varying size and relatedness. We measured maternal fitness in terms of both fruit set per flower and seed number per fruit. We found that both population size and the level of genetic relatedness among individuals influence maternal reproductive success. Our results explicitly define an ecological genetic obstacle faced by populations of an exotic species on its way to becoming invasive. Such a mechanistic understanding of the invasions of species that require a mate can and should be exploited for both controlling current outbreaks and reducing their frequency in the future.

Natural selection on floral traits of Lobelia (Lobeliaceae): spatial and temporal variation.

The strength and direction of natural selection on floral traits can vary spatially and temporally because of variation in the biotic and abiotic environment. High spatial variation in selection should lead to differentiation of floral traits among populations. In contrast, high temporal variation in selection should retard the evolution of population-specific floral phenotypes. To determine the relative importance of spatial vs. temporal variation in natural selection, we measured phenotypic selection on seven floral traits of the wildflowers Lobelia cardinalis and L. siphilitica in 1999 and 2000. Lobelia cardinalis experienced significant temporal variation in selection, whereas L. siphilitica experienced spatial variation in selection on the same traits. This variation in selection on floral traits was associated with spatial and temporal differences in the soil microenvironment. Although few studies of natural selection include spatial or temporal replicates, our results suggest that such replication is critical for understanding the distribution of phenotypes in nature.