Detalhe da pesquisa
1.
Gene architecture directs splicing outcome in separate nuclear spatial regions.
Mol Cell
; 82(5): 1021-1034.e8, 2022 03 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35182478
2.
Genome architecture and stability in the Saccharomyces cerevisiae knockout collection.
Nature
; 573(7774): 416-420, 2019 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31511699
3.
A mutation-level covariate model for mutational signatures.
PLoS Comput Biol
; 19(6): e1011195, 2023 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-37276234
4.
Network propagation: a universal amplifier of genetic associations.
Nat Rev Genet
; 18(9): 551-562, 2017 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-28607512
5.
Long reads capture simultaneous enhancer-promoter methylation status for cell-type deconvolution.
Bioinformatics
; 37(Suppl_1): i327-i333, 2021 07 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-34252972
6.
A data-driven approach for constructing mutation categories for mutational signature analysis.
PLoS Comput Biol
; 17(10): e1009542, 2021 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34665813
7.
Using deep learning to model the hierarchical structure and function of a cell.
Nat Methods
; 15(4): 290-298, 2018 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29505029
8.
Alternative splicing regulates biogenesis of miRNAs located across exon-intron junctions.
Mol Cell
; 50(6): 869-81, 2013 Jun 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-23747012
9.
Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality.
Curr Genet
; 66(6): 1117-1134, 2020 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-32681306
10.
Modeling clinical and molecular covariates of mutational process activity in cancer.
Bioinformatics
; 35(14): i492-i500, 2019 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-31510643
11.
A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1.
Genome Res
; 26(4): 541-53, 2016 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-26860615
12.
An optimization framework for network annotation.
Bioinformatics
; 34(13): i502-i508, 2018 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29949973
13.
Quantifying deleterious effects of regulatory variants.
Nucleic Acids Res
; 45(5): 2307-2317, 2017 03 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-27980060
14.
A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer.
PLoS Comput Biol
; 13(11): e1005793, 2017 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-29190299
15.
BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions.
PLoS Comput Biol
; 13(10): e1005695, 2017 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-29023534
16.
Proteomic Analysis of Dynein-Interacting Proteins in Amyotrophic Lateral Sclerosis Synaptosomes Reveals Alterations in the RNA-Binding Protein Staufen1.
Mol Cell Proteomics
; 15(2): 506-22, 2016 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-26598648
17.
Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae.
Nucleic Acids Res
; 44(5): e50, 2016 Mar 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-26602688
18.
ANAT 2.0: reconstructing functional protein subnetworks.
BMC Bioinformatics
; 18(1): 495, 2017 Nov 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-29145805
19.
Regulation of Sec16 levels and dynamics links proliferation and secretion.
J Cell Sci
; 128(4): 670-82, 2015 Feb 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25526736
20.
An integer programming framework for inferring disease complexes from network data.
Bioinformatics
; 32(12): i271-i277, 2016 06 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-27307626