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1.
Cladistics ; 2024 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-38712908

RESUMO

Insects have evolved complex sensory systems that are important for feeding, defence and reproduction. Parasitoid wasps often spend much time and effort in searching for concealed hosts with the help of specialized sensilla. However, the early evolution of such behaviour and sensilla is poorly known. We describe two fossil female wasps, †Tichostephanus kachinensis sp. nov. and †Tichostephanus longus sp. nov., from mid-Cretaceous Kachin amber. Phylogenetic analyses based on morphological data retrieved †Tichostephanus as deeply nested within Evanioidea and closely related to extant Gasteruptiidae and Evaniidae. Both of these Cretaceous wasps possess features, e.g. coronal tubercles and flexible ovipositor sheaths, that indicate that they might have laid eggs in wood where their larvae possibly parasitized insect larvae. They have a peculiar and unique 'bottle brush' of sensilla close to the apex of their ovipositor sheaths, which has not been observed in any extant parasitoid wasps. These sensilla comprise many regularly arranged plate-shaped setae, attached in relatively large sockets and with rows of longitudinal ridges. Such specialized sensilla perhaps served to enhance the ability to detect hosts inside wood.

2.
Int J Mol Sci ; 24(21)2023 Oct 27.
Artigo em Inglês | MEDLINE | ID: mdl-37958634

RESUMO

Enterotoxigenic Escherichia coli (ETEC) is a significant contributor to diarrhea. To determine whether ETEC-catecholamine hormone interactions contribute to the development of diarrhea, we tested the effects of catecholamine hormones acting on ETEC in vitro. The results showed that in the presence of norepinephrine (NE) and epinephrine (Epi), the growth of 9 out of 10 ETEC isolates was promoted, the MICs of more than 60% of the isolates to 6 antibiotics significantly increased, and the biofilm formation ability of 10 ETEC isolates was also promoted. In addition, NE and Epi also significantly upregulated the expression of the virulence genes feaG, estA, estB, and elt. Transcriptome analysis revealed that the expression of 290 genes was affected by NE. These data demonstrated that catecholamine hormones may augment the diarrhea caused by ETEC.


Assuntos
Escherichia coli Enterotoxigênica , Infecções por Escherichia coli , Proteínas de Escherichia coli , Humanos , Escherichia coli Enterotoxigênica/genética , Norepinefrina/farmacologia , Infecções por Escherichia coli/tratamento farmacológico , Catecolaminas/farmacologia , Antibacterianos/farmacologia , Diarreia , Epinefrina/farmacologia , Hormônios/farmacologia , Expressão Gênica , Biofilmes , Proteínas de Escherichia coli/metabolismo
3.
Zhongguo Zhong Yao Za Zhi ; 48(12): 3294-3307, 2023 Jun.
Artigo em Zh | MEDLINE | ID: mdl-37382014

RESUMO

A strategy combining collision cross section(CCS) prediction and quantitative structure-retention relationship(QSRR) model for quinoline and isoquinoline alkaloids was established based on UHPLC-IM-Q-TOF-MS and applied to Phellodendri Chinensis Cortex and Phellodendri Amurensis Cortex. The strategy included the following three steps.(1) The molecular features were extracted by the "find features" algorithm.(2) The potential quinoline and isoquinoline alkaloids were screened by filtering the original characteristic ions extracted from Phellodendri Chinensis Cortex and Phellodendri Amurensis Cortex by the established CCS vs m/z prediction interval.(3) According to the retention time of candidate compounds predicted by QSRR model, the chemical constituents were identified in combination with the characteristic fragment ions and pyrolysis law of secondary mass spectrometry. With the strategy, a total of 80 compounds were predicted, and 15 were identified accurately. The strategy is effective for the identification of small analogs of traditional Chinese medicine.


Assuntos
Alcaloides , Medicamentos de Ervas Chinesas , Phellodendron , Medicamentos de Ervas Chinesas/química , Espectrometria de Massa com Cromatografia Líquida , Phellodendron/química , Quinolinas/química , Quinolinas/isolamento & purificação , Alcaloides/química , Alcaloides/isolamento & purificação , Isoquinolinas/química , Isoquinolinas/isolamento & purificação
4.
Heredity (Edinb) ; 129(6): 336-345, 2022 12.
Artigo em Inglês | MEDLINE | ID: mdl-36253558

RESUMO

Drought and salt stress are important factors that affect plant growth and development and cause crop yield reductions worldwide. Phospholipase C is a class of enzymes that can hydrolyze phospholipids, and it has been shown to play an important role in plant growth regulation and stress response. We used rice as a model to investigate the function of the wheat TaPI-PLC1-2B gene in salt and drought tolerance. For this purpose, we heterologously expressed the TaPI-PLC1-2B gene in rice and studied the transcriptional differences in transgenic and wide-type rice plants in the presence and absence of drought and salt stress. Our results showed that 2130 and 1759 genes expressed differentially in the TaPI-PLC1-2B overexpression rice line under salt and drought stress, respectively. Gene ontology enrichment results showed that differentially expressed genes (DEGs) were significantly enriched in cellular process, metabolic process, stimulus-response, cell, organelle, catalytic activity, and other functional processes under salt and drought stress. In addition, the Kyoto Encyclopedia of Genes and Genomes pathway analysis showed DEG enrichment in plant-pathogen interaction, phosphoinositol, plant hormones, and other signaling pathways under the two stress treatments. Furthermore, the chromosomal localization of salt and drought stress-responsive DEGs showed a clear distribution pattern on specific rice chromosomes. For instance, the greatest number of drought stress-responsive genes mapped to rice chromosomes 1 and 6. The current analysis has built the basis for future explorations to decipher the TaPI-PLC1-2B-mediated plant stress response mechanism in the relatively challenging wheat system.


Assuntos
Secas , Oryza , Oryza/genética , Plântula/genética , Plântula/metabolismo , Tolerância ao Sal/genética , Regulação da Expressão Gênica de Plantas , Proteínas de Plantas/genética , Triticum/genética , Estresse Fisiológico/genética , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo
5.
Molecules ; 27(13)2022 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-35807405

RESUMO

The greatest challenge in the analysis of herbal components lies in their variety and complexity. Therefore, efficient analytical tools for the separation and qualitative and quantitative analysis of multi-components are essential. In recent years, various emerging analytical techniques have offered significant support for complicated component analysis, with breakthroughs in selectivity, sensitivity, and rapid analysis. Among these techniques, supercritical fluid chromatography (SFC) has attracted much attention because of its high column efficiency and environmental protection. SFC can be used to analyze a wide range of compounds, including non-polar and polar compounds, making it a prominent analytical platform. The applicability of SFC for the separation and determination of natural products in herbal medicines is overviewed in this article. The range of applications was expanded through the selection and optimization of stationary phases and mobile phases. We also focus on the two-dimensional SFC analysis. This paper provides new insight into SFC method development for herbal medicine analysis.


Assuntos
Cromatografia com Fluido Supercrítico , Plantas Medicinais , Cromatografia com Fluido Supercrítico/métodos , Medicina Herbária , Fitoterapia
6.
Phytopathology ; 111(2): 386-397, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-32706317

RESUMO

Fusarium head blight (FHB) is a devastating disease of wheat, causing yield losses and quality reduction as a result of mycotoxin production. In this study, iTRAQ (isobaric tags for relative and absolute quantification)-labeling-based mass spectrometry was employed to characterize the proteome in wheat cultivars Xinong 538 and Zhoumai 18 with contrasting levels of FHB resistance as a means to elucidate the molecular mechanisms contributing to FHB resistance. A total of 13,669 proteins were identified in the two cultivars 48 h after Fusarium graminearum inoculation. Among these, 2,505 unique proteins exclusively accumulated in Xinong 538 (resistant) and 887 proteins in Zhoumai 18 (susceptible). Gene Ontology enrichment analysis showed that most differentially accumulated proteins (DAPs) from both cultivars were assigned to the following categories: metabolic process, single-organism process, cellular process, and response to stimulus. Kyoto Encyclopedia of Genes and Genomes analysis showed that a greater number of proteins belonging to different metabolic pathways were identified in Xinong 538 compared with Zhoumai 18. Specifically, DAPs from the FHB-resistant cultivar Xinong 538 populated categories of metabolic pathways related to plant-pathogen interaction. These DAPs might play a critical role in defense responses exhibited by Xinong 538. DAPs from both genotypes were assigned to all wheat chromosomes except chromosome 6B, with approximately 30% mapping to wheat chromosomes 2B, 3B, 5B, and 5D. Twenty single nucleotide polymorphism markers, flanking DAPs on chromosomes 1B, 3B, 5B, and 6A, overlapped with the location of earlier mapped FHB-resistance quantitative trait loci. The data provide evidence for the involvement of several DAPs in the early stages of the FHB-resistance response in wheat; however, further functional characterization of candidate proteins is warranted.


Assuntos
Fusarium , Mapeamento Cromossômico , Doenças das Plantas , Proteômica , Triticum/genética
7.
Funct Integr Genomics ; 20(1): 63-74, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-31332594

RESUMO

To understand the molecular changes taking place during the early grain development in common wheat, we profiled transcriptome and proteome of two cultivars, "P271" and "Chinese Spring" (CS) with large and small grains, respectively. More than 85,000 genes and 7500 proteins were identified to express during early grain development in two wheat cultivars. We observed enrichment in the number of genes falling in the functional categories-carbohydrate metabolism, amino acid metabolism, lipid metabolism, and cofactor as well as vitamin metabolism with progression in grain development, which indicates towards the importance of these metabolic pathways during grain maturation. Many genes showed inconsistency between transcription and translation, which suggested a role of post-transcriptional events that determine the fate of nascent transcript/protein, in the early grain development. In silico localization of differentially expressed genes/proteins between CS and P271 to wheat chromosomes, exhibited a biased genomic distribution with chromosomes 1A, 4B, and 5B contributing primarily to it. These results corroborated the earlier findings, where chromosomes 1A, 4B, and 5B were reported to harbor genes/QTLs for yield contributing traits such as grain length and thickness. Collectively, this study reveals the molecular changes taking place during early grain development, through light on the regulation of these processes, and allows identification of the gene candidates contributing to the contrasting grain characteristics of CS and P721. This information has implications in the future wheat breeding for the enhanced grain yield.


Assuntos
Grão Comestível/genética , Grão Comestível/metabolismo , Triticum/genética , Triticum/metabolismo , Grão Comestível/crescimento & desenvolvimento , Regulação da Expressão Gênica de Plantas , Ontologia Genética , Genômica , MicroRNAs/metabolismo , Proteínas de Plantas/metabolismo , Proteoma , Proteômica , RNA-Seq , Transcriptoma , Triticum/crescimento & desenvolvimento
8.
BMC Vet Res ; 16(1): 176, 2020 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-32503535

RESUMO

BACKGROUND: The aim of this study was to investigate the association among biofilm formation, virulence gene expression, and antibiotic resistance in P. mirabilis isolates collected from diarrhetic animals (n = 176) in northeast China between September 2014 and October 2016. RESULTS: Approximately 92.05% of the isolates were biofilm producers, whereas 7.95% of the isolates were non-producers. The prevalence of virulence genes in the biofilm producer group was significantly higher than that in the non-producer group. Biofilm production was significantly associated with the expression of ureC, zapA, rsmA, hmpA, mrpA, atfA, and pmfA (P < 0.05). The results of drug susceptibility tests revealed that approximately 76.7% of the isolates were multidrug-resistant (MDR) and extensively drug-resistant (XDR). Biofilm production was significantly associated with resistance to doxycycline, tetracycline, sulfamethoxazole, kanamycin, and cephalothin (P < 0.05). Although the pathogenicity of the biofilm producers was stronger than that of the non-producers, the biofilm-forming ability of the isolates was not significantly associated with morbidity and mortality in mice (P > 0.05). CONCLUSION: Our findings suggested that a high level of multidrug resistance in P. mirabilis isolates obtained from diarrhetic animals in northeast China. The results of this study indicated that the positive rates of the genes expressed by biofilm-producing P. mirabilis isolates were significantly higher than those expressed by non-producing isolates.


Assuntos
Farmacorresistência Bacteriana Múltipla/genética , Proteus mirabilis/efeitos dos fármacos , Proteus mirabilis/genética , Animais , Antibacterianos/farmacologia , Biofilmes/crescimento & desenvolvimento , China , Diarreia/microbiologia , Feminino , Camundongos Endogâmicos BALB C , Testes de Sensibilidade Microbiana , Proteus mirabilis/patogenicidade , Virulência/genética
9.
Microb Pathog ; 127: 12-20, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30496836

RESUMO

Biosurfactants (BS) are amphipathic compounds produced by diverse groups of microorganisms exhibiting various biological activities. The current study aimed to assess antimicrobial, anti-adhesive and anti-biofilm activities of BS isolated from lactic acid bacteria (LAB), including Pediococcus acidilactici and Lactobacillus plantarum against Staphylococcus aureus CMCC 26003 in vitro. Cell-bound BS from both Pediococcus acidilactici and Lactobacillus plantarum were extracted, and their surface activities were evaluated by oil spreading assay. As quantified by crystal violet method, BS inhibited adhesion and biofilm formation of Staphylococcus aureus in a dose-dependent manner. The above findings were further supported by results of scanning electron microscopy. These two kinds of BS affect expressions of biofilm-related genes (cidA, icaA, dltB, agrA, sortaseA and sarA) and interfere with the release of signaling molecules (AI-2) in quorum sensing systems. Biological activities observed for BS produced by tested LAB suggest prospects for their use against Staphylococcus aureus biofilm-related infections.


Assuntos
Anti-Infecciosos/farmacologia , Aderência Bacteriana/efeitos dos fármacos , Biofilmes/efeitos dos fármacos , Lactobacillus plantarum/química , Pediococcus acidilactici/química , Staphylococcus aureus/efeitos dos fármacos , Tensoativos/farmacologia , Anti-Infecciosos/isolamento & purificação , Proteínas de Bactérias/biossíntese , Biofilmes/crescimento & desenvolvimento , Produtos Biológicos/isolamento & purificação , Produtos Biológicos/farmacologia , Perfilação da Expressão Gênica , Violeta Genciana/análise , Microscopia Eletrônica de Varredura , Percepção de Quorum/efeitos dos fármacos , Coloração e Rotulagem , Staphylococcus aureus/fisiologia , Tensoativos/isolamento & purificação
10.
Int J Mol Sci ; 20(8)2019 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-31003470

RESUMO

The 12-oxo-phytodienoic acid reductases (OPRs), which belong to the old yellow enzyme (OYE) family, are flavin mononucleotide (FMN)-dependent oxidoreductases with critical functions in plants. Despite the clear characteristics of growth and development, as well as the defense responses in Arabidopsis, tomato, rice, and maize, the potential roles of OPRs in wheat are not fully understood. Here, forty-eight putative OPR genes were found and classified into five subfamilies, with 6 in sub. I, 4 in sub. II, 33 in sub. III, 3 in sub. IV, and 2 in sub. V. Similar gene structures and conserved protein motifs of TaOPRs in wheat were identified in the same subfamilies. An analysis of cis-acting elements in promoters revealed that the functions of OPRs in wheat were mostly related to growth, development, hormones, biotic, and abiotic stresses. A total of 14 wheat OPR genes were identified as tandem duplicated genes, while 37 OPR genes were segmentally duplicated genes. The expression patterns of TaOPRs were tissue- and stress-specific, and the expression of TaOPRs could be regulated or induced by phytohormones and various stresses. Therefore, there were multiple wheat OPR genes, classified into five subfamilies, with functional diversification and specific expression patterns, and to our knowledge, this was the first study to systematically investigate the wheat OPR gene family. The findings not only provide a scientific foundation for the comprehensive understanding of the wheat OPR gene family, but could also be helpful for screening more candidate genes and breeding new varieties of wheat, with a high yield and stress resistance.


Assuntos
Genoma de Planta/genética , Oxirredutases atuantes sobre Doadores de Grupo CH-CH/genética , Estresse Fisiológico/genética , Triticum/genética , Arabidopsis/genética , Regulação da Expressão Gênica de Plantas , Família Multigênica/genética , Oryza/genética , Filogenia , Reguladores de Crescimento de Plantas/genética , Regiões Promotoras Genéticas/genética , Triticum/enzimologia , Zea mays/metabolismo
11.
BMC Vet Res ; 14(1): 29, 2018 Jan 26.
Artigo em Inglês | MEDLINE | ID: mdl-29373971

RESUMO

BACKGROUND: Mink circovirus (MiCV) is a newly discovered pathogen associated with mink diarrhea. The prevalence and economic importance of this virus remain poorly understood, and no specific serological assay has been developed for the diagnosis of MiCV infection. RESULTS: In this study, a recombinant capsid protein antigen expressed in Escherichia coli was utilized to establish an indirect enzyme-linked immunosorbent assay (iELISA). Results revealed that the assay had no cross-reactivity with other related pathogens, and the respective sensitivity and specificity of the proposed iELISA were 92.31% and 91.67% compared with those obtained of Western blot on 138 serum samples from minks. The correlation coefficient between iELISA and Western blot was 0.838 (p > 0.05). iELISA was applied to detect MiCV antibodies in 683 clinical serum samples from different farms from the major mink industry province in China, and 21 of 24 farms with 163 of 683 (23.87%) individuals were tested positive for MiCV antibodies. The positive rates of each of the 21 flocks ranged from 2.33% to 73.68%. CONCLUSIONS: These results indicated that iELISA was a sensitive and specific method suitable for the large-scale detection of MiCV infections in mink. This study provided an effective method for the serological diagnosis and positive rate investigation of MiCV infection.


Assuntos
Infecções por Circoviridae/veterinária , Circovirus , Ensaio de Imunoadsorção Enzimática/veterinária , Vison/virologia , Animais , Proteínas do Capsídeo/imunologia , Infecções por Circoviridae/imunologia , Infecções por Circoviridae/virologia , Ensaio de Imunoadsorção Enzimática/métodos , Proteínas Recombinantes/imunologia , Reprodutibilidade dos Testes , Sensibilidade e Especificidade , Testes Sorológicos/veterinária
12.
Arch Microbiol ; 199(9): 1267-1275, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28616631

RESUMO

Staphylococcus aureus (S. aureus) is a Gram-positive pathogen and forms biofilm easily. Bacteria inside biofilms display an increased resistance to antibiotics and disinfectants. The objective of the current study was to assess the antimicrobial activities of emodin, 1,2,8-trihydroxy-6-methylanthraquinone, an anthraquinone derivative isolated from Polygonum cuspidatum and Rheum palmatum, against S. aureus CMCC26003 grown in planktonic and biofilm cultures in vitro. In addition, a possible synergistic effect between emodin and berberine chloride was evaluated. As quantified by crystal violet method, emodin significantly decreased S. aureus biofilm growth in a dose-dependent manner. The above findings were further supported by scanning electron microscopy. Moreover, the present study demonstrated that sub-MICs emodin obviously intervened the release of extracellular DNA and inhibited expression of the biofilm-related genes (cidA, icaA, dltB, agrA, sortaseA and sarA) by real-time RT-PCR. These results revealed a promising application for emodin as a therapeutic agent and an effective strategy to prevent S. aureus biofilm-related infections.


Assuntos
Antibacterianos/farmacologia , Berberina/farmacologia , Biofilmes/efeitos dos fármacos , Emodina/farmacologia , Staphylococcus aureus/efeitos dos fármacos , Biofilmes/crescimento & desenvolvimento , Sinergismo Farmacológico , Expressão Gênica/efeitos dos fármacos , Testes de Sensibilidade Microbiana , Microscopia Eletrônica de Varredura , Plâncton/efeitos dos fármacos , Plâncton/microbiologia , Staphylococcus aureus/genética
13.
Proc Natl Acad Sci U S A ; 111(32): 11882-7, 2014 Aug 12.
Artigo em Inglês | MEDLINE | ID: mdl-25074914

RESUMO

Hexaploid bread wheat (Triticum aestivum L., genome BBAADD) is generally more salt tolerant than its tetraploid wheat progenitor (Triticum turgidum L.). However, little is known about the physiological basis of this trait or about the relative contributions of allohexaploidization and subsequent evolutionary genetic changes on the trait development. Here, we compared the salt tolerance of a synthetic allohexaploid wheat (neo-6x) with its tetraploid (T. turgidum; BBAA) and diploid (Aegilops tauschii; DD) parents, as well as a natural hexaploid bread wheat (nat-6x). We studied 92 morphophysiological traits and analyzed homeologous gene expression of a major salt-tolerance gene High-Affinity K(+) Transporter 1;5 (HKT1;5). We observed that under salt stress, neo-6x exhibited higher fitness than both of its parental genotypes due to inheritance of favorable traits like higher germination rate from the 4x parent and the stronger root Na(+) retention capacity from the 2x parent. Moreover, expression of the D-subgenome HKT1;5 homeolog, which is responsible for Na(+) removal from the xylem vessels, showed an immediate transcriptional reprogramming following allohexaploidization, i.e., from constitutive high basal expression in Ae. tauschii (2x) to salt-induced expression in neo-6x. This phenomenon was also witnessed in the nat-6x. An integrated analysis of 92 traits showed that, under salt-stress conditions, neo-6x resembled more closely the 2x than the 4x parent, suggesting that the salt stress induces enhanced expressivity of the D-subgenome homeologs in the synthetic hexaploid wheat. Collectively, the results suggest that condition-dependent functionalization of the subgenomes might have contributed to the wide-ranging adaptability of natural hexaploid wheat.


Assuntos
Evolução Molecular , Poliploidia , Tolerância ao Sal/genética , Tolerância ao Sal/fisiologia , Triticum/genética , Triticum/fisiologia , Cromossomos de Plantas/genética , Diploide , Aptidão Genética , Genoma de Planta , Nitrogênio/metabolismo , Pressão Osmótica , Fotossíntese/genética , Salinidade , Sódio/metabolismo , Tetraploidia
14.
Proc Natl Acad Sci U S A ; 109(50): 20543-8, 2012 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-23184965

RESUMO

Wheat supplies about 20% of the total food calories consumed worldwide and is a national staple in many countries. Besides being a key source of plant proteins, it is also a major cause of many diet-induced health issues, especially celiac disease. The only effective treatment for this disease is a total gluten-free diet. The present report describes an effort to develop a natural dietary therapy for this disorder by transcriptional suppression of wheat DEMETER (DME) homeologs using RNA interference. DME encodes a 5-methylcytosine DNA glycosylase responsible for transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters in the wheat endosperm. Previous research has demonstrated these proteins to be the major source of immunogenic epitopes. In this research, barley and wheat DME genes were cloned and localized on the syntenous chromosomes. Nucleotide diversity among DME homeologs was studied and used for their virtual transcript profiling. Functional conservation of DME enzyme was confirmed by comparing the motif and domain structure within and across the plant kingdom. Presence and absence of CpG islands in prolamin gene sequences was studied as a hallmark of hypo- and hypermethylation, respectively. Finally the epigenetic influence of DME silencing on accumulation of LMWgs and gliadins was studied using 20 transformants expressing hairpin RNA in their endosperm. These transformants showed up to 85.6% suppression in DME transcript abundance and up to 76.4% reduction in the amount of immunogenic prolamins, demonstrating the possibility of developing wheat varieties compatible for the celiac patients.


Assuntos
DNA Glicosilases/genética , Genes de Plantas , Hordeum/enzimologia , Hordeum/genética , Proteínas de Plantas/genética , Triticum/enzimologia , Triticum/genética , Sequência de Aminoácidos , Sequência de Bases , Doença Celíaca/dietoterapia , Mapeamento Cromossômico , Clonagem Molecular , Ilhas de CpG , DNA Glicosilases/química , DNA Glicosilases/metabolismo , DNA de Plantas/genética , Dieta Livre de Glúten , Proteínas Alimentares/efeitos adversos , Variação Genética , Humanos , Modelos Moleculares , Dados de Sequência Molecular , Filogenia , Proteínas de Plantas/efeitos adversos , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Prolaminas/genética , Prolaminas/metabolismo , Interferência de RNA , Homologia de Sequência de Aminoácidos , Triticum/efeitos adversos
15.
Phytopathology ; 104(3): 248-56, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24512115

RESUMO

Pseudomonas fluorescens HC1-07, previously isolated from the phyllosphere of wheat grown in Hebei province, China, suppresses the soilborne disease of wheat take-all, caused by Gaeumannomyces graminis var. tritici. We report here that strain HC1-07 also suppresses Rhizoctonia root rot of wheat caused by Rhizoctonia solani AG-8. Strain HC1-07 produced a cyclic lipopeptide (CLP) with a molecular weight of 1,126.42 based on analysis by electrospray ionization mass spectrometry. Extracted CLP inhibited the growth of G. graminis var. tritici and R. solani in vitro. To determine the role of this CLP in biological control, plasposon mutagenesis was used to generate two nonproducing mutants, HC1-07viscB and HC1-07prtR2. Analysis of regions flanking plasposon insertions in HC1-07prtR2 and HC1-07viscB revealed that the inactivated genes were similar to prtR and viscB, respectively, of the well-described biocontrol strain P. fluorescens SBW25 that produces the CLP viscosin. Both genes in HC1-07 were required for the production of the viscosin-like CLP. The two mutants were less inhibitory to G. graminis var. tritici and R. solani in vitro and reduced in ability to suppress take-all. HC1-07viscB but not HC-07prtR2 was reduced in ability to suppress Rhizoctonia root rot. In addition to CLP production, prtR also played a role in protease production.


Assuntos
Ascomicetos/efeitos dos fármacos , Peptídeos Cíclicos/farmacologia , Doenças das Plantas/prevenção & controle , Pseudomonas fluorescens/metabolismo , Rhizoctonia/efeitos dos fármacos , Triticum/microbiologia , Antifúngicos/isolamento & purificação , Antifúngicos/farmacologia , Ascomicetos/crescimento & desenvolvimento , Sequência de Bases , Agentes de Controle Biológico , China , Dados de Sequência Molecular , Mutagênese Insercional , Peptídeos Cíclicos/isolamento & purificação , Peptídeos Cíclicos/metabolismo , Fenótipo , Doenças das Plantas/microbiologia , Raízes de Plantas/microbiologia , Pseudomonas fluorescens/genética , Rhizoctonia/crescimento & desenvolvimento , Análise de Sequência de DNA
16.
Food Chem ; 457: 140130, 2024 Jun 16.
Artigo em Inglês | MEDLINE | ID: mdl-38943917

RESUMO

Comparative proteomics and non-target metabolomics, together with physiological and microstructural analyses of wheat grains (at 15, 20, 25, and 30 days after anthesis) from two different quality wheat varieties (Gaoyou 5766 (strong-gluten) and Zhoumai 18) were performed to illustrate the grain filling material dynamics and to search for quality control genes. The differential expressions of 1541 proteins and 406 metabolites were found. They were mostly engaged in protein metabolism, stress/defense, energy metabolism, and amino acid metabolism, and the metabolism of stored proteins and carbohydrates was the major focus of the latter stages. The core proteins and metabolites in the growth process were identified, and the candidate genes for quality differences were screened. In conclusion, this study offers a molecular explanation for the establishment of wheat quality, and it aids in our understanding of the intricate metabolic network between different qualities of wheat at the filling stage.

17.
Genome Biol ; 24(1): 92, 2023 04 24.
Artigo em Inglês | MEDLINE | ID: mdl-37095549

RESUMO

BACKGROUND: Extensive studies have revealed the function and mechanism of lncRNAs in development and differentiation, but the majority have focused on those lncRNAs adjacent to protein-coding genes. In contrast, lncRNAs located in gene deserts are rarely explored. Here, we utilize multiple differentiation systems to dissect the role of a desert lncRNA, HIDEN (human IMP1-associated "desert" definitive endoderm lncRNA), in definitive endoderm differentiation from human pluripotent stem cells. RESULTS: We show that desert lncRNAs are highly expressed with cell-stage-specific patterns and conserved subcellular localization during stem cell differentiation. We then focus on the desert lncRNA HIDEN which is upregulated and plays a vital role during human endoderm differentiation. We find depletion of HIDEN by either shRNA or promoter deletion significantly impairs human endoderm differentiation. HIDEN functionally interacts with RNA-binding protein IMP1 (IGF2BP1), which is also required for endoderm differentiation. Loss of HIDEN or IMP1 results in reduced WNT activity, and WNT agonist rescues endoderm differentiation deficiency caused by the depletion of HIDEN or IMP1. Moreover, HIDEN depletion reduces the interaction between IMP1 protein and FZD5 mRNA and causes the destabilization of FZD5 mRNA, which is a WNT receptor and necessary for definitive endoderm differentiation. CONCLUSIONS: These data suggest that desert lncRNA HIDEN facilitates the interaction between IMP1 and FZD5 mRNA, stabilizing FZD5 mRNA which activates WNT signaling and promotes human definitive endoderm differentiation.


Assuntos
Diferenciação Celular , Endoderma , Receptores Frizzled , RNA Longo não Codificante , Proteínas de Ligação a RNA , Humanos , Diferenciação Celular/genética , Receptores Frizzled/metabolismo , RNA Longo não Codificante/genética , RNA Mensageiro/metabolismo , RNA Interferente Pequeno/metabolismo , Proteínas de Ligação a RNA/genética
18.
J Pharm Biomed Anal ; 219: 114939, 2022 Sep 20.
Artigo em Inglês | MEDLINE | ID: mdl-35908412

RESUMO

Ion-mobility mass spectrometry (IM-MS) currently serves as a powerful tool for the structural identification of numerous biological compounds and small molecules. In this work, rapid metabolomic analysis of closely-related herbal medicines by direct injection ion mobility-quadrupole time-of-flight mass spectrometry (DI-IM-QTOF MS) was established. Phellodendron chinense Bark (PC) and Phellodendron amurense Bark (PA) were studied as a case. Thirty-three batches of PC and twenty-two batches of PA have been directly injected in electrospray ionization-IM-QTOF MS in positive mode. Without chromatographic separation, each run was completed within 3 min. After data alignment and statistical analysis, a total of seven chemical markers were found (p-value < 0.05, VIP > 1.00). Among them, the ion m/z 342.17 and m/z 356.18 present a single peak in the drift spectrum, respectively, but their drift time has a certain deviation compared with the pure substance of known compounds. In addition, the MS/MS spectra also confirmed that the single peak includes two chemical isomers. To investigate the composition ratio of individual isomers, the calibration curves of relative drift time (rDT) based on the standard superposition method were established, which were found to fit the least square regression. The ion [M]+m/z 342.17 was recognized consisting of magnoflorine (MAG) and phellodendrine (PHE), and their composition ratio in PA and PC samples was calculated. The results were compared with those obtained by the HPLC quantitative method, which produced equivalent quantification results. Our DI-IM-QTOF MS methodology provides an additional methodology for the relative quantification of unresolved isomers in drift tube IM-MS and offers DI-IM-QTOF MS based metabolomics.


Assuntos
Phellodendron , Espectrometria de Massas por Ionização por Electrospray , Cromatografia Líquida de Alta Pressão/métodos , Casca de Planta , Espectrometria de Massas por Ionização por Electrospray/métodos , Espectrometria de Massas em Tandem
19.
J Chromatogr A ; 1657: 462572, 2021 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-34601257

RESUMO

Rapid identification of chemical analogues in herbal medicines using liquid chromatography-mass spectrometry was an efficient tool for discoveries of potentially active ingredients. Multi-dimensional combination of various separation technologies could significantly enhance the capacities for detection of trace components and discrimination of multiple isomers. In this study, an integrated two-step filtering strategy on liquid chromatography-ion mobility tandem with quadrupole-time-of-flight mass spectrometry (LC-IM-QTOF MS) was developed for identification of analogues in complex matrixes. The extracted raw data were preliminarily filtered by a collision-cross section (CCS) interval generated from power regression with confidence level at 99% for prediction of analogues. Then, the remained ions were further screened using a mass defect filtering (MDF) window based on m/z and decimal m/z of potential skeletons and substituents. By applying this strategy, 86, 102, 73, and 57 isoquinoline alkaloids were identified in herbal materials of Coptis chinensis Franch (CC), C. deltoidea C.Y.Cheng et Hsiao (CD), C. teeta Wall (CT), and Corydalis yanhusuo W.T.Wang (CY). The integrated two-step filtering presented higher efficiencies on exclusion of the background interference and reducing the false-positive rates than previously reported approaches. This study facilitated the application of LC-IM-MS on small molecular analysis and promoted the discoveries of bioactive components of herbal medicines for further pharmacological researches and quality control.


Assuntos
Medicamentos de Ervas Chinesas , Cromatografia Líquida de Alta Pressão , Cromatografia Líquida , Íons , Espectrometria de Massas
20.
Sci Total Environ ; 771: 145186, 2021 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-33736148

RESUMO

Drought has a substantial socioeconomic impact under the changing climate. The estimation of population exposure to drought could be the pivotal signal to predict future water scarcity in the climate hotspot of South Asia. This study examines the changing population exposure to drought across South Asia using 20 climate model ensembles from the latest CMIP6 and demographic data under shared socioeconomic pathways (SSPs). Underpinning the latest version of the IPCC 6th Assessment Report (AR6), this paper focuses on the 2021-2040 (near-term), 2041-2060 (mid-term), and 2081-2100 (long-term) periods to project population exposure changes relative to the reference period (1995-2014) under four SSP-RCP scenarios. Drought events are detected by adopting the standardized precipitation evapotranspiration index (SPEI) and run theory method. Model validation suggests that CMIP6-GCM performs well in projecting climate variables and capturing drought events. The results show that the projected increases in frequent drought events and affected areal coverage are stronger during the early part of the century and weaker at the end under all scenario combinations. In relative terms, the projected increase in the number of people exposed to drought is dominant (>1.5-fold) in the near-term and mid-term periods but decreases in the long-term period. Compared to the reference period, the leading increase in population exposure (2.3-fold) is projected under the newly designed gap scenario (SSP3-7.0) in the mid-term period. A surprising decline in the number of exposed populations was estimated to be 18.8% under SSP5-8.5 by the end of the century. The mitigating effect of the predicted heavy precipitation will decrease droughts in the late future. Spatially, increasing exposure will become more pronounced across India and Afghanistan. Furthermore, the population change effect is mainly responsible for the exposure changes in South Asia. However, this study strongly recommends future 'plausible world' regional rivalry pathways (SSP3) scenario-combinations into consideration for policymaking in regard to water management as well as migration planning over South Asia.

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