Habitat associations of imperilled fishes after conservation intervention in the Cape Fold Ecoregion, South Africa.

The aim of this study was to examine the habitat associations of a native cyprinid community of the recovering Rondegat River in the Cape Fold Ecoregion of South Africa as part of a long-term native fish abundance monitoring project. Relative abundance data were extracted from underwater video camera footage across the longitudinal gradient of the river in three sampling instances. Using multivariate methods the authors assessed community composition with respect to habitat, its overlap with a protected area and species-specific abiotic predictors of relative abundance. Distance from the uppermost site in the river was the most significant predictor of species abundance, indicating spatial segregation and varying overlap between species. The protected status of sites in the upper reaches, vegetated substrates and the size of individual sites were the most impactful on the relative abundance of the endangered fiery redfin Pseudobarbus phlegethon. The results of this study indicate that underwater video monitoring is an effective and low-cost approach that can inform conservation recommendations. Reducing agricultural runoff and sedimentation in the lower reaches may be useful further interventions to maintain key habitats of submerged vegetation.

Trophic ecology of co-occurring fishes in the Sundays River Valley irrigation ponds, assessed using stable isotope and gut content analyses.

The analysis of food web structures has increased the understanding of the dynamics of organisms belonging to different trophic levels. In this study, the diet of two native species, Glossogobius callidus and Gilchristella aestuaria, was assessed in the presence of two non-native species, Oreochromis mossambicus and Gambusia affinis, in irrigation ponds, Eastern Cape Province, South Africa. The proportion of dietary items consumed and assimilated by the four fish species were inferred from gut contents and carbon and nitrogen stable isotope analysis. Stable isotope analysis revealed that both G. affinis and O. mossambicus had a larger isotopic niche size than G. callidus and G. aestuaria. Although G. callidus fed on benthic resources and G. aestuaria fed on phytoplankton, gut content analysis showed that G. callidus, O. mossambicus and G. affinis fed predominantly on benthic resources, whereas G. aestuaria fed mainly on plankton resources. Considerable niche overlap corroborates the view that resource competition is a major factor shaping the composition of the four fish species. This study highlighted the low diversity of the food web within the Sundays River Valley irrigation ponds, where food items are shared by all the small-bodied fishes.

Exploratory stock identification through morphometric trait analysis of the estuarine round herring, Gilchristella aestuaria (Pisces: Clupeidae).

As a first step in stock identification of estuarine round herring Gilchristella aestuaria, a morphometric analysis of multiple standardised traits and body condition was conducted on samples from sites across the distribution range of the species, including freshwater and estuarine populations. Multivariate analyses, including a principal component analysis (PCA), revealed that sites on the same river system and sites in close geographic proximity tend to share morphometric traits. Most of the variation in PCA was due to caudal fin length (CFL). Single traits were analysed with generalised additive models with river system location as the smooth term. CFL was strongly related to river systems, and to a lesser extent salinity and turbidity. Unlike previous local-scale studies, this broad-scale study did not support the notion of ecotypes based on eye diameter. Condition indices like body depth and relative weight were related to climatic conditions, salinity and turbidity, more than to river system. The findings agree with previous studies on phylogenetic history and limited gene flow in G. aestuaria, and suggest variation in environmental productivity that affects body condition in different populations. Subsequent research should examine temporal changes in traits like CFL and body condition based on long-term seasonal sampling. Safeguarding this potential resource may be enabled by adopting appropriate management methods based on delineation of stocks with different levels of productivity and connectivity, before widespread fishing of this species is promoted.

Pseudodactylogyrus anguillae (Yin & Sproston, 1948) from the giant mottled eel Anguilla marmorata Quoy & Gaimard, 1824, in the Phongolo River, South Africa: an invader on the African continent.

The global invasive anguillid gill parasite Pseudodactylogyrus anguillae (Yin and Sproston, 1948) has only recently been documented from eels in South Africa. As there is no known eel trade in South Africa, the source of introduction of this parasite has been debated, and its status as an alien parasite was rendered uncertain. We report on the first infection of Pseudodactylogyrus anguillae from the giant mottled eel Anguilla marmorata from the Phongolo River (South Africa) using classic morphological and molecular methodologies and clarify the introduction status category of this parasite as alien and invasive.

Life history of the river goby Glossogobius callidus (Teleostei: Gobiidae).

The river goby Glossogobius callidus is native to freshwater and estuarine habitats in South Africa. Individuals [21.1-144.4 mm total length (LT )] were sampled from impoundments in the Sundays River Valley, Eastern Cape, from February 2014 to March 2015. The largest female was 137.2 mm LT , and the largest male was 144.4 mm LT . Length-at-50% maturity was 75.2 ± 2.1 mm LT for males and 76.2 ± 2.0 mm LT for females. Absolute fecundity was 1028.2 ± 131.7 oocytes per fish, and relative fecundity was 50.1 ± 18.1 oocytes per gram. The spawning season extended from October to December. Fish were aged using sectioned sagittal otoliths. The growth zone periodicity was validated using edge analysis. Longevity was more than 7 years for females and more than 6 years for males. Length-at-age was similar for the two sexes and was best described using the von Bertalanffy growth model as Lt = 74.7(1 - e-1.0(t + 0.1) ) mm LT for the entire population. Using the population age structure, the mortality rate was estimated at 1.3 per year.

Genetic variability and demographic history of Anguilla mossambica (Peters, 1852) from continental Africa and Madagascar.

In this study, population genetic and demographic parameters were inferred using sequence data from 151 individuals of Anguilla mossambica originating from continental south and south-east Africa and Madagascar. The analyses were based on a 532 bp segment of the mitochondrial cytochrome b gene. The absence of genetic structuring was observed thereby supporting the hypothesis of panmixia for the endemic A. mossambica. The overall nucleotide diversity π = 0.002 and the haplotype diversity reached h = 0.691. Significant negative values from several tests of neutrality and mismatch analysis pointed to fluctuating historical population sizes. Bayesian averaging resulted in higher support for population growth models vs. a constant population-size model. Population decline and subsequent growth most likely predated the last glacial and were probably related to extended periods of extreme drought followed by wetter and more stable hydroclimate between 150 and 75,000 years before present (kBP). According to this scenario the female effective population size has increased since 110 kBP by c. two orders of magnitude to a recent level of about 650,000 (219,317-2,292,000).

Innate responses to conspecific and heterospecific alarm cues in the endangered eastern cape redfin Pseudobarbus afer.

We examined innate responses to conspecific and heterospecific alarm cues in a small cyprinid minnow, the Eastern Cape redfin Pseudobarbus afer. We found that redfins respond to conspecific skin extract, which contains alarm chemicals, and showed that their preferred response is to hide in refugia. Redfins also respond to skin extract from an allopatric, distantly related minnow species, the chubbyhead barb Enteromius anoplus indicating that neither sympatry nor close phylogenetic relationships are necessary for recognition of heterospecific alarm cues. Although both conspecific and heterospecific alarm cues induced similar responses, the response to heterospecific cues was less intense. This may be explained by a trade-off between selection to maximise threat recognition and selection to avoid the costs of responding to irrelevant cues, or by differences in chemical structures of alarm cues between species. These findings have implications for the conservation of this Endangered fish species and for freshwater fishes throughout Africa.

Molecular and morphological evidence reveals hybridisation between two endemic cyprinid fishes.

The geographic occurrence of moggel Labeo umbratus × mud fish Labeo capensis hybrids and the threat of hybridisation to the genetic integrity of L. umbratus were investigated. Genetic evidence from mtDNA cytb and nDNA s7 intron sequence data indicated probable interspecific hybridisation in two impoundments, Hardap Dam (Orange River Basin, Namibia) and Darlington Dam (Sundays River Basin, Eastern Cape, South Africa). Some putative hybrids were morphologically identifiable on account of their meristic and morphometric intermediacy to the parent species. Human activities appear to drive the observed hybridisation, either through dam construction and direct stocking of L. umbratus or via translocation of Labeo capensis and the previously isolated Orange River lineage of L. umbratus into the southern-flowing systems by inter-basin water transfers. It is recommended that further translocation of fish from these areas should be avoided.

Implications of the movement behaviour of African tigerfish Hydrocynus vittatus for the design of freshwater protected areas.

African tigerfish Hydrocynus vittatus (n = 35) were tagged with external radio-transmitters in the Kavango River, Namibia, to determine whether freshwater protected areas could be an effective tool for the management and conservation of this species. They were manually tracked in the core study area of 33 km every c. 12 days from July-October 2016 to May 2017 for between 123 to 246 days. In addition, 14 extended surveys were carried out for up to 680 km to determine the total area use of the tagged individuals. Tigerfish displayed at least two behavioural patterns either having high site fidelity with shorter movements or using larger areas with longer movements. Twenty-three (66%) of the tigerfish had high site fidelity using an area of less than 33 km of river, whereas 12 tigerfish (34%) undertook long distance movements of up to 397 km upstream and 116 km downstream from their tagging locations. During the long-distance movements tigerfish crossed the territorial boundaries of Angola, Namibia and Botswana. Of the 35 fish that were monitored, 14 (40%) spent more than 80% of the monitored time in the 33 km study area and 18 (51%) stayed within the study area for at least 50% of the monitored time. These findings suggest that freshwater protected areas may be a useful management tool and we predict that a protected river area of 2-5 km river length could protect 25.9-34.6% of the population for at least 75% of the time whereas protection of 10 km river length could protect at least 50% of tigerfish for at least 75% of the time.

Assessing predator-prey interactions in a chemically altered aquatic environment: the effects of DDT on Xenopus laevis and Culex sp. larvae interactions and behaviour.

Behavioural assays are used as a tool to understand ecotoxicological effects on organisms, but are often not applied in an ecologically relevant context. Assessment of the effect of chemical contaminants on behaviours relating to fitness and trophic interactions for example, requires incorporating predator-prey interactions to create impact assessments. Dichlorodiphenyltrichloroethane (DDT) is a controlled substance but is still regularly used as a form of mosquito control. There is little explicit information on the effect of DDT on animal behaviour and the consequent effects upon trophic interactions. This study uses a 3 × 2 factorial design to assess the feeding behaviour of Xenopus laevis toward Culex sp. larvae when supplied with different prey cues. We also assess the behavioural responses of mosquito larvae when supplied with no threat cue and predator threat cues when exposed to 0 µg/L, 2 µg/L and 20 µg/L DDT. There was a significant "DDT exposure" x "prey cue" interaction whereby DDT significantly decreased the foraging behaviour of X. laevis towards live prey cues, however there was no effect of DDT on X. laevis response to olfactory prey cues. Dichlorodiphenyltrichloroethane exposure caused mosquito larvae to appear hyperactive regardless of DDT concentration. Mosquito larvae anti-predator response was significantly dampened when exposed to 2 µg/L DDT, however when exposed to 20 µg/L the anti-predator responses were not impaired. Our results indicate a complex interplay in trophic interactions under DDT exposure, wherein effects are mediated depending on species and concentration. There are possible implications regarding reduced anti-predator behaviour in the prey species but also reduced foraging capacity in the predator, which could drive changes in ecosystem energy pathways. We demonstrate that in order to quantify effects of pesticides upon trophic interactions it is necessary to consider ecologically relevant behaviours of both predator and prey species.

Species succession and the development of a lacustrine fish community in an ephemeral lake.

Here, we present a gillnet survey of Lake Liambezi a 370 km2 shallow ephemeral floodplain lake situated in north-eastern Namibia, which is fed irregularly by the upper Zambezi and Kwando Rivers during years of high flooding. The lake dried up in 1985 and, with the exception of sporadic minor annual inundation events, remained dry until 2007. We describe the temporal succession of fish species over an 8 year period from initial inundation 2007 to maturation in 2014. The succession of the fish community did not follow the typical pattern of opportunistic strategists during colonisation, to periodic strategists that are eventually succeeded by equilibrium strategists. Instead, the evolution of the fish community was characterised by three distinct phases. The first phase involved the inundation and colonisation of the lake in 2007, followed by its decline until the floods that filled the lake in 2009. During this phase the lake was colonised by fishes from the adjacent upper Zambezi and Chobe River floodplains. Fish communities predominantly comprised floodplain specialists including the barbs Enteromius paludinosus and Enteromius poechii, the mormyrid Marcusenius altisambesi and catfishes Schilbe intermedius and Clarias gariepinus. The filling of the lake in the March 2009 floods marked the beginning of the second, successional phase. The barbs declined in abundance and the alestid Rhabdalestes maunensis underwent explosive population growth between 2009 and 2010, but populations crashed equally rapidly and were replaced by Brycinus lateralis which, together with S. intermedius went on to dominate the fish community 2011-2014. Larger, slower growing tilapiine cichlids increased steadily in abundance and became the dominant components in a 2700 t y-1 artisanal fishery that developed on the lake. The fish community in the ephemeral Lake Liambezi is clearly influenced by numerous factors including connectivity, lake level fluctuations, competition and the effects of fishing, which may disrupt typical succession processes in floodplain ecosystems.

Variation in thermal tolerances of native freshwater fishes in South Africa's Cape Fold Ecoregion: examining the east-west gradient in species' sensitivity to climate warming.

The Cape Fold Ecoregion (CFE) is a biodiversity hotspot with high levels of endemism in its freshwater fish fauna. This study examined inter and intra-specific variation in critical thermal maxima (TCmax ) for eight native species of freshwater fish from the CFE. Cape galaxias Galaxias zebratus, Breede River redfin Pseudobarbus burchelli, Berg River redfin Pseudobarbus burgi, Clanwilliam redfin Pseudobarbus calidus and fiery redfin Pseudobarbus phlegethon were the most thermally sensitive (TCmax = 29.8-32.8°C). Clanwilliam rock-catfish Austroglanis gilli, Eastern Cape redfin Pseudobarbus afer and Cape kurper Sandelia capensis were moderately sensitive (TCmax = 33.0-36.8°C). An increase in intra-specific thermal sensitivity of S. capensis was observed from east to west. The results were related to in situ water temperature, which influenced TCmax for all species, suggesting that thermal history is a major driver of variation in thermal tolerance amongst populations. These thermal tolerance data for freshwater fishes in the CFE demonstrate that resilience to climate warming follows a geographical cline and that the more sensitive western species and regions are conservation priorities.

Sleeping with the enemy: introgressive hybridization in two invasive centrarchids.

Introgressive hybridization between Micropterus dolomieu and Micropterus salmoides was assessed in their invaded South African range using nine microsatellite markers and two mtDNA gene regions. Although M. dolomieu and M. salmoides are distantly related, indicated by the large uncorrected pairwise distances observed between the two species, mitochondrial introgression and unidirectional admixture was detected.

Existing and emerging high impact invasive species are characterized by higher functional responses than natives.

Predicting ecological impacts of invasive species and identifying potentially damaging future invaders are research priorities. Since damage by invaders is characterized by their depletion of resources, comparisons of the 'functional response' (FR; resource uptake rate as a function of resource density) of invaders and natives might predict invader impact. We tested this by comparing FRs of the ecologically damaging 'world's worst' invasive fish, the largemouth bass (Micropterus salmoides), with a native equivalent, the Cape kurper (Sandelia capensis), and an emerging invader, the sharptooth catfish (Clarias gariepinus), with the native river goby (Glossogobius callidus), in South Africa, a global invasion hotspot. Using tadpoles (Hyperolius marmoratus) as prey, we found that the invaders consumed significantly more than natives. Attack rates at low prey densities within invader/native comparisons reflected similarities in predatory strategies; however, both invasive species displayed significantly higher Type II FRs than the native comparators. This was driven by significantly lower prey handling times by invaders, resulting in significantly higher maximum feeding rates. The higher FRs of these invaders are thus congruent with, and can predict, their impacts on native communities. Comparative FRs may be a rapid and reliable method for predicting ecological impacts of emerging and future invasive species.

Inland recreational fisheries contribute nutritional benefits and economic value but are vulnerable to climate change.

Inland recreational fishing is primarily considered a leisure-driven activity in freshwaters, yet its harvest can contribute to food systems. Here we estimate that the harvest from inland recreational fishing equates to just over one-tenth of all reported inland fisheries catch globally. The estimated total consumptive use value of inland recreational fish destined for human consumption may reach US$9.95 billion annually. We identify Austria, Canada, Germany and Slovakia as countries above the third quantile for nutrition, economic value and climate vulnerability. These results have important implications for populations dependent on inland recreational fishing for food. Our findings can inform climate adaptation planning for inland recreational fisheries, particularly those not currently managed as food fisheries.

Propagule pressure drives establishment of introduced freshwater fish: quantitative evidence from an irrigation network.

Propagule pressure is recognized as a fundamental driver of freshwater fish invasions, though few studies have quantified its role. Natural experiments can be used to quantify the role of this factor relative to others in driving establishment success. An irrigation network in South Africa takes water from an inter-basin water transfer (IBWT) scheme to supply multiple small irrigation ponds. We compared fish community composition upstream, within, and downstream of the irrigation network, to show that this system is a unidirectional dispersal network with a single immigration source. We then assessed the effect of propagule pressure and biological adaptation on the colonization success of nine fish species across 30 recipient ponds of varying age. Establishing species received significantly more propagules at the source than did incidental species, while rates of establishment across the ponds displayed a saturation response to propagule pressure. This shows that propagule pressure is a significant driver of establishment overall. Those species that did not establish were either extremely rare at the immigration source or lacked the reproductive adaptations to breed in the ponds. The ability of all nine species to arrive at some of the ponds illustrates how long-term continuous propagule pressure from IBWT infrastructure enables range expansion of fishes. The quantitative link between propagule pressure and success and rate of population establishment confirms the driving role of this factor in fish invasion ecology.

Redescription of Heliconema africanum (Linstow, 1899) n. comb. (Nematoda: Physalopteridae), a nematode parasite of freshwater eels (Anguilla spp.) in South Africa.

The little-known nematode species Heliconema africanum (Linstow, 1899) n. comb. (Physalopteridae) is redescribed based on light and scanning electron microscopical examinations of specimens collected from the stomach of the African longfin eel Anguilla mossambica (Peters) in the Nahoon River, Eastern Cape Province, South Africa. This species, previously misidentified as Heliconema longissimum (Ortlepp, 1922), is a common parasite of eels in South Africa. The systematic status of H. longissimum, a species originally described from unidentified Australian snakes, is unclear and probably several morphologically closely related species have been included under this name.

Community structure and environmental factors affecting diatom abundance and diversity in a Mediterranean climate river system.

Mediterranean climate river systems are among the most threatened ecosystems worldwide, due to a long history of anthropogenic impacts and alien invasive species introductions. Many of such rivers naturally exhibit a non-perennial flow regime, with distinct seasonal, inter-annual and spatial heterogeneity. The present study seeks to detect diatom community patterns and to understand the processes that cause these structures in an Austral Mediterranean river system among different months and river sections. In general, most environmental variables showed an increasing trend downstream for both months, with the exception of pH, dissolved oxygen, PO43- and substrate embeddedness, which decreased downstream. A total of 110 diatom species between the two study months (October - 106 taxa; January - 78 taxa) were identified, dominated by 30 species with at least >2% abundance. Diatom community structure differed significantly across river zones, while no significant differences were observed between the study months. A boosted regression trees model showed that B (43.3%), Cu (20.8%), Fe (3.4%) and water depth (3.2%) were the most significant variables structuring diatoms. Diatom species communities reflected environmental variables (i.e., sediment and water chemistry) in this Mediterranean climate river system, as sediment metals such as B, Cu and Fe were found to be important in structuring diatom communities. Biotic influences from fish communities had little effect on diversity, but shifted diatom community structure. Therefore, the current study highlights how river systems have complex interactions that play an important role in determining diatom species composition.

Invasive carp alter trophic niches of consumers and basal resources in African reservoirs.

Environmental pollution and biological invasions are key drivers of biodiversity change. However, the effects of invasion and pollution on food webs remain largely unexplored. Here, we used stable isotopes to examine the effects of common carp Cyprinus carpio and pollution on trophic dynamics in six small reservoirs. Our results revealed that the trophic niche widths of invertebrates, vertebrates, and invasive carp did not significantly differ among reservoirs with different pollution statuses. However, we found low niche conservatism among reservoirs, suggesting that while niche width may remain consistent, there is a shift in the position of the niches in isotopic space under both pollution and invasion scenarios. Niche conservatism among reservoirs was generally higher in invertebrates, but this was also regardless of reservoir condition (i.e. presence or absence of pollution and invasion). These results suggest that invasion by species coupled with organic pollution may cause subtle yet differing effects on components of a food web (basal end-members, invertebrates and vertebrates). Our findings provide a baseline measure of the potential in the development of detection and response strategies for carp invasions and organic pollution.

Global dataset of species-specific inland recreational fisheries harvest for consumption.

Inland recreational fisheries, found in lakes, rivers, and other landlocked waters, are important to livelihoods, nutrition, leisure, and other societal ecosystem services worldwide. Although recreationally-caught fish are frequently harvested and consumed by fishers, their contribution to food and nutrition has not been adequately quantified due to lack of data, poor monitoring, and under-reporting, especially in developing countries. Beyond limited global harvest estimates, few have explored species-specific harvest patterns, although this variability has implications for fisheries management and food security. Given the continued growth of the recreational fishery sector, understanding inland recreational fish harvest and consumption rates represents a critical knowledge gap. Based on a comprehensive literature search and expert knowledge review, we quantified multiple aspects of global inland recreational fisheries for 81 countries spanning ~192 species. For each country, we assembled recreational fishing participation rate and estimated species-specific harvest and consumption rate. This dataset provides a foundation for future assessments, including understanding nutritional and economic contributions of inland recreational fisheries.