Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

We used a newer, synchrotron-based, spectroscopic technique (nuclear resonance vibrational spectroscopy, NRVS) in combination with a more traditional one (infrared absorption, IR) to obtain a complete, quantitative picture of the metal center vibrational dynamics in a six-coordinated tin porphyrin. From the NRVS (119)Sn site-selectivity and the sensitivity of the IR signal to (112)Sn/(119)Sn isotope substitution, we identified the frequency of the antisymmetric stretching of the axial bonds (290 cm(-1)) and all the other vibrations involving Sn. Experimentally authenticated density functional theory (DFT) calculations aid the data interpretation by providing detailed normal mode descriptions for each observed vibration. These results may represent a starting point toward the characterization of the local vibrational dynamics of the metallic site in tin porphyrins and compounds with related structures. The quantitative complementariness between IR, NRVS, and DFT is emphasized.

Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Nuclear resonance vibrational spectra have been obtained for six five-coordinate imidazole-ligated iron(II) porphyrinates, [Fe(Por)(L)] (Por = tetraphenylporphyrinate, octaethylporphyrinate, tetratolylporphyrinate, or protoporphyrinate IX and L = 2-methylimidazole or 1,2-dimethylimidazole). Measurements have been made on both powder and oriented crystal samples. The spectra are dominated by strong signals around 200-300 cm(-1). Although the in-plane and out-of-plane vibrations are seriously overlapped, oriented crystal spectra allow their deconvolution. Thus, oriented crystal experimental data, along with density functional theory (DFT) calculations, enable the assignment of key vibrations in the spectra. Molecular dynamics are also discussed. The nature of the Fe-N(Im) vibrations has been elaborated further than was possible from resonance Raman studies. Our study suggests that the Fe motions are coupled with the porphyrin core and peripheral groups motions. Both peripheral groups and their conformations have significant influence on the vibrational spectra (position and shape).

Role of the pisigma* state in molecular photophysics.

Photosynthesis, which depends on light-driven energy and electron transfer in assemblies of porphyrins, chlorophylls, and carotenoids, is just one example of the many complex natural systems of photobiology. A fuller understanding of the spectroscopy and photophysics of simple aromatic molecules is central to elucidating photochemical processes in the more sophisticated assemblies of photobiology. Moreover, developing a better grasp of the photophysics of simple aromatic molecules will also enhance our ability to create and improve practical applications in photochemical energy conversion, molecular nanophotonics, and molecular electronics. In this Account, we present a concerted experimental and theoretical study of aromatic ethynes, aromatic nitriles, and fluorinated benzenes, illustrating the important roles that the low-lying pisigma* state plays in the electronic relaxation of these aromatic compounds. Diphenylacetylene, 4-dialkylaminobenzonitriles, 4-dialkylaminobenzethynes, and fluorinated benzenes exhibit fluorescence that strongly quenches as the excitation energy is increased for gas-phase systems and at elevated temperatures in solution. Much of this interesting photophysical behavior can be attributed to the presence of a dark intermediate state that crosses the fluorescent pipi* state. Our quantum chemistry calculations, as well as time-resolved laser spectroscopies, indicate that this dark intermediate state is the pisigma* state that arises from the promotion of an electron from the pi orbital of the phenyl ring to the sigma* orbital localized in the C[triple bond]X group (where X is CH and N) or on the C-X group (where X is a halogen). These crossings not only lead to the strong excitation energy and temperature dependence of fluorescence but also induce highly interesting pisigma*-mediated intramolecular charge transfer in 4-dialkylaminobenzonitriles. Most previous studies on the excited-state dynamics of organic molecules have examined aromatic hydrocarbons, nitrogen heterocycles, aromatic carbonyl compounds, and polyenes, which have low-lying excited states of pipi* character (hydrocarbons and polyenes) or npi* and pipi* character (carbonyls and N-heterocycles). These studies have revealed important involvement of selection rules (promoting vibrational modes and spin-orbit coupling) and Franck-Condon factors for radiationless transitions, which have important effects on photophysical properties. The recent experimental and time-dependent density functional theory (TDDFT) calculations of aromatic ethynes, nitriles, and perfluorinated benzenes described in this Account demonstrate the importance of the bound excited state of a pisigma* configuration in these molecules.

The role of the πσ* state in intramolecular charge transfer of 4-(dimethylamino)benzonitrile.

The solvent-polarity dependence and temporal characteristics of the transient absorption of 4-(dimethylamino)benzonitrile, DMABN, and 4-(dimethylamino)benzethyne, DMABE, demonstrate the presence of the πσ*-state absorption at about 700 nm and the ππ* (LE)-state absorption at about 520 nm and 450 nm. The rise and decay times of the πσ*-state transient differ from those of the ππ*-state transients in both compounds. Moreover, the peak position of the πσ*-state absorption is blue-shifted and more intense in acetonitrile as compared to n-hexane, whereas the band positions of the ππ*-state absorptions are essentially the same in the two solvents. For DMABN in acetonitrile, the rise time (∼4.3 ps) of the twisted intramolecular charge transfer (TICT)-state transient at 330 nm is identical to the decay time of the πσ*-state transient. The 4.8 ns decay time of the TICT-state absorption of DMABN is longer than the 2.9 ns decay time of the intramolecular charge-transfer (ICT) fluorescence, indicating that the fluorescent ICT state differs from the TICT state observed in transient absorption. These results are consistent with the presence of a low-lying πσ* state in DMABN (and DMABE), and the role the πσ* state plays in the formation of the TICT state of DMABN.

Combined experimental and computational study of intramolecular charge transfer in p-N,N-dimethylamino-p'-cyano-diphenylacetylene.

A concerted experi-mental (time-resolved spectroscopies) and computational (TDDFT) study of p-N,N-dimethylamino-p'-cyano-diphenylacetylene (DACN-DPA) has been carried out to probe the intramolecular charge transfer (ICT) reaction that occurs in polar solvents. The picosecond transient absorption, as well as fluorescence, in acetonitrile reveals the formation of a twisted ICT(σ*) state, which involves transfer of an electron from the 4-(dimethylamino)benzethyne moiety (DMAB) to the benzonitrile (BN) group. This ICT(σ*) state, with a large dipole moment (24.7 D) and a geometry in which the plane of electron-accepting BN group is perpendicular to the plane electron-donating DMAB moiety and the angles of C(DMAB)C≡C is 135.0°, is responsible for the greatly Stokes-shifted (∼8000 cm(-1)) fluorescence and the transient absorption bands (with peaks at about 630 and 425 nm), which decays with the same lifetime (∼780 ps). It is proposed that the 630 nm picosecond transient absorption of the ICT state represents the absorption spectrum of dimethylaminobenzethyne radical cation and the 425 nm transient represents the absorption spectrum of benzonitrile radical anion. In nonpolar n-hexane, most of the fluorescence as well as the major component of the transient absorption originate from the S(1) (ππ*) state.

Coupled electron and proton transfer processes in 4-dimethylamino-2-hydroxy-benzaldehyde.

TDDFT calculations, picosecond transient absorption, and time-resolved fluorescence studies of 4-dimethylamino-2-hydroxy-benzaldehyde (DMAHBA) have been carried out to study the electron and proton transfer processes in polar (acetonitrile) and nonpolar (n-hexane) solvents. In n-hexane, the transient absorption (TA) as well as the fluorescence originate from the ππ* state of the keto form (with the carbonyl group in the benzaldehyde ring), which is produced by an intramolecular proton transfer from the initially excited ππ* state of the enol form (OH group in the ring). The decay rate of TA and fluorescence are essentially identical in n-hexane. In acetonitrile, on the other hand, the TA exhibits features that can be assigned to the highly polar twisted intramolecular charge transfer (TICT) states of enol forms, as evidenced by the similarity of the absorption to the TICT-state absorption spectra of the closely related 4-dimethylaminobenzaldehyde (DMABA). As expected, the decay rate of the TICT-state of DMAHBA is different from the fluorescence lifetime of the ππ* state of the keto form. The occurrence of the proton and electron transfers in acetonitrile is in good agreement with the predictions of the TDDFT calculations. The very short-lived (∼1 ps) fluorescence from the ππ* state of the enol form has been observed at about 380 nm in n-hexane and at about 400 nm in acetonitrile.

Photochrome that was not: 2-hydroxynaphtylidene-(8-aminoquinoline).

We report the results of quantum-chemical calculations, which show that the keto form of 2-hydroxynaphtylidene-(8-aminoquinoline) (HNAQ) is slightly more stable than the enol form both in the ground and first excited ππ* electronic states. The barrier for proton transfer between the enol and the ketone in the ground state is ca. 3300 cm(-1) (HF), and 770 cm(-1) (B3LYP), indicating a very fast (ps scale) exchange of protons between the two tautomeric forms. This barrier decreases slightly in the first excited ππ* electronic state (2500 cm(-1) - CIS), making proton exchange even faster. We show that the ππ* state of the ketone tautomer is prone to radiationless transition to a state with nearly perpendicular orientation of the two ring systems, similarly to other Schiff bases that are photochromes (for instance salicydeneaniline). This state arises when an electron from the highest occupied molecular orbital (HOMO) of the ketone ring system is transferred to a LUMO localized on the CHNH group of the bridge connecting the two ring systems of the molecule. The energy minimum of this "perpendicular" state lies only ca. 0.09 eV from the ground state potential-energy surface, thus it is prone to extremely rapid radiationless decay. Further relaxation on this surface leads to a metastable conformation that lies ca. 4440 cm(-1) above the planar, hydrogen-bonded, ketone conformation. Unfortunately, photochromism of this metastable conformation does not occur, since its absorption spectrum overlaps the spectrum of the stable species (with the predicted absorption around 438 nm vs calculated 440.6 nm in the stable ketone).

High-resolution spectroscopy of jet-cooled 1,1'-diphenylethylene: electronically excited and ionic states of a prototypical cross-conjugated system.

The photophysics of a prototypical cross-conjugated π-system, 1,1'-diphenylethylene, have been studied using high-resolution resonance enhanced multiphoton ionization excitation spectroscopy and zero kinetic energy photoelectron spectroscopy, in combination with advanced ab initio calculations. We find that the excitation spectrum of S(1) displays extensive vibrational progressions that we identify to arise from large changes in the torsional angles of the phenyl rings upon electronic excitation. The extensive activity of the antisymmetric inter-ring torsional vibration provides conclusive evidence for a loss of symmetry upon excitation, leading to an inequivalence of the two phenyl rings. Nonresonant zero kinetic energy photoelectron spectroscopy from the ground state of the neutral molecule to the ground state of the radical cation, on the other hand, demonstrates that upon ionization symmetry is retained, and that the geometry changes are considerably smaller. Apart from elucidating how removal of an electron affects the structure of the molecule, these measurements provide an accurate value for the adiabatic ionization energy (65274 ± 1 cm(-1) (8.093 eV)). Zero kinetic energy photoelectron spectra obtained after excitation of vibronic levels in S(1) confirm these conclusions and provide us with an extensive atlas of ionic vibronic energy levels. For higher excitation energies the excitation spectrum of S(1) becomes quite congested and shows unexpected large intensities. Ab initio calculations strongly suggest that this is caused by a conical intersection between S(1) and S(2).

Spectroscopy and photophysics of 1,4-bis(phenylethynyl)benzene: effects of ring torsion and dark pi sigma* state.

A combination of supersonic-jet laser spectroscopy and quantum chemistry calculation was applied to 1,4-bis(phenylethynyl)benzene, BPEB, to study the role of the dark pisigma* state on electronic relaxation and the effect of ring torsion on electronic spectra. The result provides evidence for fluorescence break-off in supersonic jet at high S1(pi pi*) <-- S0 excitation energies, which can be attributed to the pi pi*-pi sigma* intersection. The threshold energy for the fluorescence break-off is much larger in BPEB (approximately 4000 cm(-1)) than in diphenylacetylene (approximately 500 cm(-1)). The high-energy barrier in BPEB accounts for the very large fluorescence quantum yield of the compound (in solution) relative to diphenylacetylene. The comparison between the experimentally derived torsional barrier and frequency with those from the computation shows overall good agreement and demonstrates that the low-energy torsional motion involves the twisting of the end ring in BPEB. The torsional barrier is almost an order of magnitude greater in the pi pi* excited state than in the ground state. The finding that the twisting of the end ring in BPEB is relatively free in the ground state, but strongly hindered in the excited state, provides rationale for the well-known temperature dependence of the spectral shape of absorption and the lack of mirror symmetry relationship between the absorption and fluorescence at elevated temperatures.

Time-dependent density functional theory study of cobalt corrinoids: Electronically excited states of methylcobalamin.

Time-dependent density functional theory (TDDFT) has been applied to the analysis of the electronic spectra of methylcobalamin (MeCbl) and its derivative in which the trans axial base was replaced by a water molecule (MeCbi[Single Bond]H(2)O). The latter corresponds to the situation encountered in strongly acidic solutions. The study primarily focuses on the accuracy of two functionals, the hybrid B3LYP and the gradient corrected BP86, in dealing with the electronic excitations. The high resolution crystal structure of MeCbl was the source of the initial coordinates. To generate the initial structures, the full MeCbl was simplified by replacing the corrin side chains by H atoms. The vertical excitation energies, together with the corresponding oscillator strengths, were calculated at the optimized BP86 and B3LYP structures of the ground electronic state of the complexes. The NBO analysis shows that the B3LYP functional gives a bonding description of the ground state as a more polarized covalent bond compared to that given by BP86. The latter functional has more covalent bonding and is thus more appropriate for modeling the axial bonding properties. To validate the accuracy of the present TDDFT analysis, the computed excitations were directly compared to the absorption spectra of MeCbl. In order to obtain a reliable agreement between experiment and theory, the two-parameter scaling technique was introduced, which compensates differently the low-energy and high-energy excitations. Electronic excitations strongly depend on the choice of the functional. Transitions involving corrin pi-->pi(*) excitations are better described by the B3LYP functional while transitions associated with metal-to-ligand (dpi-->pi(*)d) excitations are better described by BP86. These differences can be associated with the different bonding descriptions obtained by B3LYP and BP86.

O-2 Substituted pyranosyl oxacarbenium ions are C-2-O-2 2-fold rotors with a strong syn preference.

The substituent at O-2 of glycopyranosides is known to have a pronounced effect on both the formation and the cleavage of glycosides at C-1. This is primarily attributed to stereoelectronic effects on the formation and stability of the related glycopyranosyl oxacarbenium ions. Previous QM studies of 2-O-methyl substituted manno and gluco configured pyranosyl oxacarbenium ions found a preference for the methyl carbon to be syn to the CH-2 methine. This study examines the conformational preference of variously substituted O-2 tetrahydropyranosyl oxacarbenium ions and confirms this syn preference. Neutral analogues are shown to have the expected 3-fold rotation whereas the charged species exhibit 2-fold rotation about C-2-O-2. Natural bond order (NBO) calculations suggest that the dominant stabilizing interaction is a unimodal O-2 lone pair to C-1-O-5 pi-bond hyperconjugative interaction. This syn conformational preference has important implications for mimics of glycopyranosyl oxacarbenium ion transition states. It also suggests a conformational based mechanism that can be exploited to tune the reactivity of glycopyranosyl donors in the glycosylation reaction.

Investigations into the role of oxacarbenium ions in glycosylation reactions by ab initio molecular dynamics.

We present a constrained ab initio molecular dynamics method that allows the modeling of the conformational interconversions of glycopyranosyl oxacarbenium ions. The model was successfully tested by estimating the barriers to ring inversion for two 4-substituted tetrahydropyranosyl oxacarbenium ions. The model was further extended to predict the pathways that connect the (4)H(3) half-chair conformation of 2,3,4,6-tetra-O-methyl-d-glucopyranosyl cation to its inverted (5)S(1) conformation and the (4)H(3) half-chair conformation of 2,3,4,6-tetra-O-methyl-d-mannopyranosyl cation to its inverted (3)E conformation. The modeled interconversion pathways reconcile a large body of experimental work on the acid-catalyzed hydrolysis of glycosides and the mechanisms of a number of glucosidases and mannosidases.

The two-conformer hypothesis: 2,3,4,6-tetra-O-methyl-mannopyranosyl and -glucopyranosyl oxacarbenium ions.

Computational chemistry can give information about the probable conformations of reactive intermediates that are difficult to determine experimentally. Based on density functional theory (DFT) calculations of tetra-O-methyl-D-mannopyranosyl and -glucopyranosyl oxacarbenium ions, two families of conformations, which we call B0 and B1, were found. For the manno configuration, a 4H3 and 3E almost isoenergetic pair were found, whereas for the gluco-configuration a 4H3 and 5S1 pair favouring 4H3 were calculated. These results corroborate earlier results and suggest that this two or more conformer hypothesis is general. Nucleophilic attack on these pairs of cations was modelled with methanol and led to four cases to consider namely alpha- or beta-attack on B0 or B1. The resulting complexes (G0, G1 and F0, F1) demonstrate facial selectivity. The relative energies of these complexes are dominated by intramolecular hydrogen bonding and the conformational consequences to the pyranose ring of changes in the C-5-O-5-C-1-C-2 torsion angle. Constrained variation of the nucleophilic oxygen (methanol) to C-1 distance shows that these ion dipole complexes are the only minima with this constraint.

Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

High-resolution X-ray measurements near a nuclear resonance reveal the complete vibrational spectrum of the probe nucleus. Because of this, nuclear resonance vibrational spectroscopy (NRVS) is a uniquely quantitative probe of the vibrational dynamics of reactive iron sites in proteins and other complex molecules. Our measurements of vibrational fundamentals have revealed both frequencies and amplitudes of (57)Fe vibrations in proteins and model compounds. Information on the direction of Fe motion has also been obtained from measurements on oriented single crystals, and provides an essential test of normal mode predictions. Here, we report the observation of weaker two-quantum vibrational excitations (overtones and combinations) for compounds that mimic the active site of heme proteins. The predicted intensities depend strongly on the direction of Fe motion. We compare the observed features with predictions based on the observed fundamentals, using information on the direction of Fe motion obtained either from DFT predictions or from single crystal measurements. Two-quantum excitations may become a useful tool to identify the directions of the Fe oscillations when single crystals are not available.

Covalent Functionalization of Boron Nitride Nanotubes via Reduction Chemistry.

Boron nitride nanotubes (BNNTs) exhibit a range of properties that hold great potential for many fields of science and technology; however, they have inherently low chemical reactivity, making functionalization for specific applications difficult. Here we propose that covalent functionalization of BNNTs via reduction chemistry could be a highly promising and viable strategy. Through density functional theory calculations of the electron affinity of BNNTs and their binding energies with various radicals, we reveal that their chemical reactivity can be significantly enhanced via reducing the nanotubes (i.e., negatively charging). For example, a 5.5-fold enhancement in reactivity of reduced BNNTs toward NH2 radicals was predicted relative to their neutral counterparts. The localization characteristics of the BNNT π electron system lead the excess electrons to fill the empty p orbitals of boron sites, which promote covalent bond formation with an unpaired electron from a radical molecule. In support of our theoretical findings, we also experimentally investigated the covalent alkylation of BNNTs via reduction chemistry using 1-bromohexane. The thermogravimetric measurements showed a considerable weight loss (12-14%) only for samples alkylated using reduced BNNTs, suggesting their significantly improved reactivity over neutral BNNTs. This finding will provide an insight in developing an effective route to chemical functionalization of BNNTs.

Photophysical and spectroscopic manifestations of the low-lying pisigma* state of 4-(dimethylamino)benzethyne: solvent-polarity dependence of fluorescence and excited-state absorptions.

A concerted experimental and computational study of 4-(dimethylamino)benzethyne, DMABE, has been carried out to probe the low-lying pisigma* state and the role it plays in the photophysics of the molecule. The subpicosecond transient absorption spectra reveal the presence of a strong excited-state absorption at about 700 nm and a weaker absorption at about 520 nm. The observed absorption maxima are in excellent agreement with the TDDFT calculations that place a strongly allowed pisigma* <--pisigma* transition at 750 nm, and a weaker pipi* <--pipi* (LE) transition at 528 nm. This agreement combined with the differing decay times, and differing solvent shifts of the two transients, allow assignments of the 700 nm absorption to the pisigma* state and the 520 nm absorption to the LE (pipi*) state. The bifurcation of the initially excited L(a) (pipi*) state into the pisigma* state and the LE state, as probed by transient absorption, is strongly influenced by solvent polarity, with polar environments favoring the L(a)-->pisigma* decay channel over the competing L(a)--> LE decay channel. The nanosecond radiationless decay of the LE state to the dark pisigma* state is also strongly enhanced in polar environments, thus accounting for the dramatic quenching of fluorescence in solvents of high polarity.

The low-lying pisigma* state and its role in the intramolecular charge transfer of aminobenzonitriles and aminobenzethyne.

Electronic absorption spectra of the low-lying pipi(*) and pisigma(*) states of several aminobenzonitriles and 4-dimethylaminobenzethyne have been studied by time-resolved transient absorption and time-dependent density functional theory calculation. In acetonitrile, the lifetime of the pisigma(*)-state absorption is very short (picoseconds or subpicosecond) for molecules that exhibit intramolecular charge transfer (ICT), and very long (nanoseconds) for those that do not. Where direct comparison of the temporal characteristics of the pisigma(*)-state and the ICT-state transients could be made, the formation rate of the ICT state is identical to the decay rate of the pisigma(*) state within the experimental uncertainty. These results are consistent with the pisigma(*)-mediated ICT mechanism, L(a) (pipi(*))-->pisigma(*)-->ICT, in which the decay rate of the pisigma(*) state is determined by the rate of the solvent-controlled pisigma(*)-->ICT charge-shift reaction. The pipi(*)-->pisigma(*) state crossing does not occur in 3-dimethylaminobenzonitrile or 2-dimethylaminobenzonitrile, as predicted by the calculation, and 4-aminobenzonitrile and 4-dimethylaminobenzethyne does not exhibit the ICT reaction, consistent with the higher energy of the ICT state relative to the pisigma(*) state.

Highly effective quenching of the ultrafast radiationless decay of photoexcited pyrimidine bases by covalent modification: photophysics of 5,6-trimethylenecytosine and 5,6-trimethyleneuracil.

5,6-Trimethylenecytosine (TMC) and 5,6-trimethyleneuracil (TMU), in which the twist of the C5-C6 bond (or the pyrimidalization of C5) is strongly hindered, do not exhibit the subpicosecond excited-state lifetime characteristic of the naturally occurring pyrimidine bases. This result demonstrates the important role the out-of-plane deformation of the six-membered ring plays in the ultrafast (subpicosecond) internal conversion of photoexcited nucleobases. The dramatically shorter fluorescence lifetime of TMU ( approximately 30 ps) relative to TMC ( approximately 1.2 ns), in aqueous solution at room temperature, is attributed to the presence in TMU of an efficient, secondary nonradiative decay channel of S(1)(pipi*) involving a low-lying (1)npi* state.

Quantitative vibrational dynamics of iron in carbonyl porphyrins.

We use nuclear resonance vibrational spectroscopy and computational predictions based on density functional theory (DFT) to explore the vibrational dynamics of (57)Fe in porphyrins that mimic the active sites of histidine-ligated heme proteins complexed with carbon monoxide. Nuclear resonance vibrational spectroscopy yields the complete vibrational spectrum of a Mössbauer isotope, and provides a valuable probe that is not only selective for protein active sites but quantifies the mean-squared amplitude and direction of the motion of the probe nucleus, in addition to vibrational frequencies. Quantitative comparison of the experimental results with DFT calculations provides a detailed, rigorous test of the vibrational predictions, which in turn provide a reliable description of the observed vibrational features. In addition to the well-studied stretching vibration of the Fe-CO bond, vibrations involving the Fe-imidazole bond, and the Fe-N(pyr) bonds to the pyrrole nitrogens of the porphyrin contribute prominently to the observed experimental signal. All of these frequencies show structural sensitivity to the corresponding bond lengths, but previous studies have failed to identify the latter vibrations, presumably because the coupling to the electronic excitation is too small in resonance Raman measurements. We also observe the FeCO bending vibrations, which are not Raman active for these unhindered model compounds. The observed Fe amplitude is strongly inconsistent with three-body oscillator descriptions of the FeCO fragment, but agrees quantitatively with DFT predictions. Over the past decade, quantum chemical calculations have suggested revised estimates of the importance of steric distortion of the bound CO in preventing poisoning of heme proteins by carbon monoxide. Quantitative agreement with the predicted frequency, amplitude, and direction of Fe motion for the FeCO bending vibrations provides direct experimental support for the quantum chemical description of the energetics of the FeCO unit.