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1.
J Biol Chem ; 292(25): 10321-10327, 2017 06 23.
Artigo em Inglês | MEDLINE | ID: mdl-28515315

RESUMO

Encapsulation of specific enzymes in self-assembling protein cages is a hallmark of bacterial compartments that function as counterparts to eukaryotic organelles. The cage-forming enzyme lumazine synthase (LS) from Bacillus subtilis (BsLS), for example, encapsulates riboflavin synthase (BsRS), enabling channeling of lumazine from the site of its generation to the site of its conversion to vitamin B2 Elucidating the molecular mechanisms underlying the assembly of these supramolecular complexes could help inform new approaches for metabolic engineering, nanotechnology, and drug delivery. To that end, we investigated a thermostable LS from Aquifex aeolicus (AaLS) and found that it also forms cage complexes with the cognate riboflavin synthase (AaRS) when both proteins are co-produced in the cytosol of Escherichia coli A 12-amino acid-long peptide at the C terminus of AaRS serves as a specific localization sequence responsible for targeting the guest to the protein compartment. Sequence comparisons suggested that analogous peptide segments likely direct RS complexation by LS cages in other bacterial species. Covalent fusion of this peptide tag to heterologous guest molecules led to their internalization into AaLS assemblies both in vivo and in vitro, providing a firm foundation for creating tailored biomimetic nanocompartments for medical and biotechnological applications.


Assuntos
Bactérias/enzimologia , Proteínas de Bactérias/biossíntese , Complexos Multienzimáticos/biossíntese , Peptídeos/metabolismo , Riboflavina Sintase/biossíntese , Bactérias/genética , Proteínas de Bactérias/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Engenharia Metabólica , Complexos Multienzimáticos/genética , Peptídeos/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Riboflavina/biossíntese , Riboflavina/genética , Riboflavina Sintase/genética
2.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 5): 1419-34, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24816110

RESUMO

Riboflavin synthase (RS) catalyzes the last step of riboflavin biosynthesis in microorganisms and plants, which corresponds to the dismutation of two molecules of 6,7-dimethyl-8-ribityllumazine to yield one molecule of riboflavin and one molecule of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione. Owing to the absence of this enzyme in animals and the fact that most pathogenic bacteria show a strict dependence on riboflavin biosynthesis, RS has been proposed as a potential target for antimicrobial drug development. Eubacterial, fungal and plant RSs assemble as homotrimers lacking C3 symmetry. Each monomer can bind two substrate molecules, yet there is only one active site for the whole enzyme, which is located at the interface between two neighbouring chains. This work reports the crystallographic structure of RS from the pathogenic bacterium Brucella abortus (the aetiological agent of the disease brucellosis) in its apo form, in complex with riboflavin and in complex with two different product analogues, being the first time that the structure of an intact RS trimer with bound ligands has been solved. These crystal models support the hypothesis of enhanced flexibility in the particle and also highlight the role of the ligands in assembling the unique active site. Kinetic and binding studies were also performed to complement these findings. The structural and biochemical information generated may be useful for the rational design of novel RS inhibitors with antimicrobial activity.


Assuntos
Brucella abortus/enzimologia , Riboflavina Sintase/química , Riboflavina Sintase/metabolismo , Sequência de Aminoácidos , Sítios de Ligação , Domínio Catalítico , Cristalografia por Raios X , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Riboflavina/química , Riboflavina Sintase/genética , Homologia de Sequência de Aminoácidos
3.
Antimicrob Agents Chemother ; 58(12): 7225-33, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25246406

RESUMO

Nitrofurantoin has been used for decades for the treatment of urinary tract infections (UTIs), but clinically significant resistance in Escherichia coli is uncommon. Nitrofurantoin concentrations in the gastrointestinal tract tend to be low, which might facilitate selection of nitrofurantoin-resistant (NIT-R) strains in the gut flora. We subjected two nitrofurantoin-susceptible intestinal E. coli strains (ST540-p and ST2747-p) to increasing nitrofurantoin concentrations under aerobic and anaerobic conditions. Whole-genome sequencing was performed for both susceptible isolates and selected mutants that exhibited the highest nitrofurantoin resistance levels aerobically (ST540-a and ST2747-a) and anaerobically (ST540-an and ST2747-an). ST540-a/ST540-an and ST2747-a (aerobic MICs of >64 µg/ml) harbored mutations in the known nitrofurantoin resistance determinants nfsA and/or nfsB, which encode oxygen-insensitive nitroreductases. ST2747-an showed reduced nitrofurantoin susceptibility (aerobic MIC of 32 µg/ml) and exhibited remarkable growth deficits but did not harbor nfsA/nfsB mutations. We identified a 12-nucleotide deletion in ribE, encoding lumazine synthase, an essential enzyme involved in the biosynthesis of flavin mononucleotide (FMN), which is an important cofactor for NfsA and NfsB. Complementing ST2747-an with a functional wild-type lumazine synthase restored nitrofurantoin susceptibility. Six NIT-R E. coli isolates (NRCI-1 to NRCI-6) from stools of UTI patients treated with nitrofurantoin, cefuroxime, or a fluoroquinolone harbored mutations in nfsA and/or nfsB but not ribE. Sequencing of the ribE gene in six intestinal and three urinary E. coli strains showing reduced nitrofurantoin susceptibility (MICs of 16 to 48 µg/ml) also did not identify any relevant mutations. NRCI-1, NRCI-2, and NRCI-5 exhibited up to 4-fold higher anaerobic MICs, compared to the mutants generated in vitro, presumably because of additional mutations in oxygen-sensitive nitroreductases.


Assuntos
Sequência de Bases , Farmacorresistência Bacteriana/genética , Escherichia coli/genética , Complexos Multienzimáticos/genética , Riboflavina Sintase/genética , Deleção de Sequência , Aerobiose , Anaerobiose , Antibacterianos/farmacologia , Cefuroxima/farmacologia , Escherichia coli/efeitos dos fármacos , Escherichia coli/enzimologia , Escherichia coli/isolamento & purificação , Infecções por Escherichia coli/tratamento farmacológico , Infecções por Escherichia coli/microbiologia , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Fluoroquinolonas/farmacologia , Teste de Complementação Genética , Humanos , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , Complexos Multienzimáticos/metabolismo , Nitrofurantoína/farmacologia , Nitrorredutases/genética , Nitrorredutases/metabolismo , Riboflavina Sintase/metabolismo , Infecções Urinárias/tratamento farmacológico , Infecções Urinárias/microbiologia
4.
Molecules ; 19(11): 17141-53, 2014 Oct 24.
Artigo em Inglês | MEDLINE | ID: mdl-25347458

RESUMO

Riboflavin (vitamin B2) is the precursor of flavin mononucleotide and flavin adenine dinucleotide-essential cofactors for a wide variety of enzymes involving in numerous metabolic processes. In this study, a partial-length cDNA encoding bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase (LcRIBA), 2 full-length cDNAs encoding lumazine synthase (LcLS1 and LcLS2), and a full-length cDNA encoding riboflavin synthase (LcRS) were isolated from Lycium chinense, an important traditional medicinal plant. Sequence analyses showed that these genes exhibited high identities with their orthologous genes as well as having the same common features related to plant riboflavin biosynthetic genes. LcRIBA, like other plant RIBAs, contained a DHBPS region in its N terminus and a GCHII region in its C-terminal part. LcLSs and LcRS carried an N-terminal extension found in plant riboflavin biosynthetic genes unlike the orthologous microbial genes. Quantitative real-time polymerase chain reaction analysis showed that 4 riboflavin biosynthetic genes were constitutively expressed in all organs examined of L. chinense plants with the highest expression levels found in the leaves or red fruits. LcRIBA, which catalyzes 2 initial reactions in riboflavin biosynthetic pathway, was the highest transcript in the leaves, and hence, the richest content of riboflavin was detected in this organ. Our study might provide the basis for investigating the contribution of riboflavin in diverse biological activities of L. chinense and may facilitate the metabolic engineering of vitamin B2 in crop plants.


Assuntos
DNA Complementar/genética , GTP Cicloidrolase/genética , Lycium/genética , Complexos Multienzimáticos/genética , Riboflavina Sintase/genética , Riboflavina/genética , Riboflavina/metabolismo , Sequência de Aminoácidos , Biodiversidade , GTP Cicloidrolase/metabolismo , Genes de Plantas/genética , Lycium/metabolismo , Complexos Multienzimáticos/metabolismo , Peptídeo Sintases/genética , Peptídeo Sintases/metabolismo , Plantas Medicinais/genética , Plantas Medicinais/metabolismo , Riboflavina Sintase/metabolismo , Alinhamento de Sequência , Fosfatos Açúcares/metabolismo
5.
J Biol Chem ; 285(42): 32467-75, 2010 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-20696762

RESUMO

DNA photolyases use two noncovalently bound chromophores to catalyze photoreactivation, the blue light-dependent repair of DNA that has been damaged by ultraviolet light. FAD is the catalytic chromophore for all photolyases and is essential for photoreactivation. The identity of the second chromophore is often 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO). Under standard light conditions, the second chromophore is considered nonessential for photoreactivation because DNA photolyase bound to only FAD is sufficient to catalyze the repair of UV-damaged DNA. phr1 is a photoreactivation-deficient strain of Chlamydomonas. In this work, the PHR1 gene of Chlamydomonas was cloned through molecular mapping and shown to encode a protein similar to known FO synthases. Additional results revealed that the phr1 strain was deficient in an FO-like molecule and that this deficiency, as well as the phr1 photoreactivation deficiency, could be rescued by transformation with DNA constructs containing the PHR1 gene. Furthermore, expression of a PHR1 cDNA in Escherichia coli produced a protein that generated a molecule with characteristics similar to FO. Together, these results indicate that the Chlamydomonas PHR1 gene encodes an FO synthase and that optimal photoreactivation in Chlamydomonas requires FO, a molecule known to serve as a second chromophore for DNA photolyases.


Assuntos
Chlamydomonas reinhardtii/genética , Chlamydomonas reinhardtii/metabolismo , Desoxirribodipirimidina Fotoliase/metabolismo , Riboflavina/análogos & derivados , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Éxons , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Teste de Complementação Genética , Íntrons , Luz , Dados de Sequência Molecular , Riboflavina/química , Riboflavina/metabolismo , Riboflavina Sintase/genética , Riboflavina Sintase/metabolismo
6.
FEBS J ; 275(17): 4403-14, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18671734

RESUMO

The pathway of riboflavin (vitamin B2) biosynthesis is significantly different in archaea, eubacteria, fungi and plants. Specifically, the first committed intermediate, 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, can either undergo hydrolytic cleavage of the position 2 amino group by a deaminase (in plants and most eubacteria) or reduction of the ribose side chain by a reductase (in fungi and archaea). We compare 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate synthases from the yeast Candida glabrata, the archaeaon Methanocaldococcus jannaschii and the eubacterium Aquifex aeolicus. All three enzymes convert 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate into 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate, as shown by 13C-NMR spectroscopy using [2,1',2',3',4',5'-13C6]2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate as substrate. The beta anomer was found to be the authentic substrate, and the alpha anomer could serve as substrate subsequent to spontaneous anomerisation. The M. jannaschii and C. glabrata enzymes were shown to be A-type reductases catalysing the transfer of deuterium from the 4(R) position of NADPH to the 1' (S) position of the substrate. These results are in agreement with the known three-dimensional structure of the M. jannaschii enzyme.


Assuntos
Archaea/enzimologia , Fungos/enzimologia , Riboflavina Sintase/metabolismo , Sequência de Aminoácidos , Clonagem Molecular , Cinética , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Ressonância Magnética Nuclear Biomolecular , Riboflavina Sintase/química , Riboflavina Sintase/genética , Homologia de Sequência de Aminoácidos , Estereoisomerismo , Ultracentrifugação
7.
Artigo em Inglês | MEDLINE | ID: mdl-18607092

RESUMO

Icosahedral macromolecules have a wide spectrum of potential nanotechnological applications, the success of which relies on the level of accuracy at which the molecular structure is known. Lumazine synthase from Bacillus subtilis forms a 150 A icosahedral capsid consisting of 60 subunits and crystallizes in space group P6(3)22 or C2. However, the quality of these crystals is poor and structural information is only available at 2.4 A resolution. As classical strategies for growing better diffracting crystals have so far failed, protein engineering has been employed in order to improve the overexpression and purification of the molecule as well as to obtain new crystal forms. Two cysteines were replaced to bypass misfolding problems and a charged surface residue was replaced to force different molecular packings. The mutant protein crystallizes in space group R3, with unit-cell parameters a = b = 313.02, c = 365.77 A, alpha = beta = 90.0, gamma = 120 degrees , and diffracts to 1.6 A resolution.


Assuntos
Complexos Multienzimáticos/normas , Engenharia de Proteínas/normas , Bacillus subtilis/enzimologia , Bacillus subtilis/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/normas , Cristalização/métodos , Cristalização/normas , Complexos Multienzimáticos/química , Complexos Multienzimáticos/genética , Mutagênese Sítio-Dirigida/métodos , Mutagênese Sítio-Dirigida/normas , Engenharia de Proteínas/métodos , Riboflavina Sintase/química , Riboflavina Sintase/genética , Riboflavina Sintase/normas
8.
Res Microbiol ; 169(6): 279-288, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29751065

RESUMO

Bacterial non-coding RNAs (ncRNAs) are widely studied and found to play important roles in regulating various cellular processes. Recently, many ncRNAs have been discovered to be transcribed or processed from 3' untranslated regions (3' UTRs). Here we reported a novel 3' UTR-derived ncRNA, RibS, which could influence biofilm formation of Salmonella enterica serovar Typhi (S. Typhi). RibS was confirmed to be a ∼700 nt processed product produced by RNase III-catalyzed cleavage from the 3' UTR of riboflavin synthase subunit alpha mRNA, RibE. Overexpression of RibS increased the expression of the cyclopropane fatty acid synthase gene, cfa, which was located at the antisense strand. Biofilm formation of S. Typhi was enhanced by overexpressing RibS both in the wild type strain and cfa deletion mutant. Deletion of cfa attenuated biofilm formation of S. Typhi, while complementation of cfa partly restored the phenotype. Moreover, overexpressing cfa enhanced the biofilm formation of S. Typhi. In summary, RibS has been identified as a novel ncRNA derived from the 3' UTR of RibE that promotes biofilm formation of S. Typhi, and it appears to do so, at least in part, by increasing the expression of cfa.


Assuntos
Regiões 3' não Traduzidas/genética , Biofilmes/crescimento & desenvolvimento , Metiltransferases/genética , RNA não Traduzido/genética , Riboflavina Sintase/genética , Salmonella typhi/genética , Sequência de Bases , Deleção de Genes , Técnicas de Inativação de Genes , Salmonella typhi/metabolismo , Salmonella typhi/patogenicidade
9.
J Microbiol Methods ; 70(1): 13-9, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17467833

RESUMO

Pichia guilliermondii is a representative of a yeast species, all of which over-synthesize riboflavin in response to iron deprivation. Molecular genetic studies in this yeast species have been hampered by a lack of strain-specific tools for gene manipulation. Stable P. guilliermondii ura3 mutants were selected on the basis of 5'-fluoroorotic acid resistance. Plasmid carrying Saccharomyces cerevisiae URA3 gene transformed the mutant strains to prototrophy with a low efficiency. Substitution of a single leucine codon CUG by another leucine codon CUC in the URA3 gene increased the efficiency of transformation 100 fold. Deletion cassettes for the RIB1 and RIB7 genes, coding for GTP cyclohydrolase and riboflavin synthase, respectively, were constructed using the modified URA3 gene and subsequently introduced into a P. guilliermondii ura3 strain. Site-specific integrants were identified by selection for the Rib(-) Ura(+) phenotype and confirmed by PCR analysis. Transformation of the P. guilliermondii ura3 strain was performed using electroporation, spheroplasting or lithium acetate treatment. Only the lithium acetate transformation procedure provided selection of uracil prototrophic, riboflavin deficient recombinant strains. Depending on the type of cassette, efficiency of site-specific integration was 0.1% and 3-12% in the case of the RIB1 and RIB7 genes, respectively. We suggest that the presence of the ARS element adjacent to the 3' end of the RIB1 gene significantly reduced the frequency of homologous recombination. Efficient gene deletion in P. guilliermondii can be achieved using the modified URA3 gene of S. cerevisiae flanked by 0.8-0.9 kb sequences homologous to the target gene.


Assuntos
Biologia Molecular/métodos , Pichia/genética , Transformação Genética , Códon , DNA Fúngico/genética , Eletroporação , Proteínas Fúngicas/genética , GTP Cicloidrolase/genética , Deleção de Genes , Vetores Genéticos/genética , Mutagênese Insercional , Plasmídeos/genética , Mutação Puntual , Reação em Cadeia da Polimerase , Riboflavina Sintase/genética
10.
Nucleic Acids Res ; 30(14): 3141-51, 2002 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-12136096

RESUMO

The riboflavin biosynthesis in bacteria was analyzed using comparative analysis of genes, operons and regulatory elements. A model for regulation based on formation of alternative RNA structures involving the RFN elements is suggested. In Gram-positive bacteria including actinomycetes, Thermotoga, Thermus and Deinococcus, the riboflavin metabolism and transport genes are predicted to be regulated by transcriptional attenuation, whereas in most Gram-negative bacteria, the riboflavin biosynthesis genes seem to be regulated on the level of translation initiation. Several new candidate riboflavin transporters were identified (impX in Desulfitobacterium halfniense and Fusobacterium nucleatum; pnuX in several actinomycetes, including some Corynebacterium species and Strepto myces coelicolor; rfnT in Rhizobiaceae). Traces of a number of likely horizontal transfer events were found: the complete riboflavin operon with the upstream regulatory element was transferred to Haemophilus influenzae and Actinobacillus pleuropneumoniae from some Gram-positive bacterium; non-regulated riboflavin operon in Pyrococcus furiousus was likely transferred from Thermotoga; and the RFN element was inserted into the riboflavin operon of Pseudomonas aeruginosa from some other Pseudomonas species, where it had regulated the ribH2 gene.


Assuntos
Bactérias/genética , Regulação Bacteriana da Expressão Gênica , Riboflavina/biossíntese , Bactérias/metabolismo , Sequência de Bases , Transporte Biológico/genética , Genes Bacterianos/genética , Genoma Bacteriano , Dados de Sequência Molecular , Complexos Multienzimáticos/genética , Complexos Multienzimáticos/metabolismo , Conformação de Ácido Nucleico , Óperon/genética , Filogenia , Biossíntese de Proteínas , RNA Bacteriano/química , RNA Bacteriano/genética , Sequências Reguladoras de Ácido Nucleico/genética , Riboflavina/metabolismo , Riboflavina Sintase/genética , Riboflavina Sintase/metabolismo , Homologia de Sequência do Ácido Nucleico , Transcrição Gênica
11.
Structure ; 9(5): 399-408, 2001 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-11377200

RESUMO

BACKGROUND: Riboflavin synthase catalyzes the dismutation of two molecules of 6,7-dimethyl-8-(1'-D-ribityl)-lumazine to yield riboflavin and 4-ribitylamino-5-amino-2,6-dihydroxypyrimidine. The homotrimer of 23 kDa subunits has no cofactor requirements for catalysis. The enzyme is nonexistent in humans and is an attractive target for antimicrobial agents of organisms whose pathogenicity depends on their ability to biosynthesize riboflavin. RESULTS: The first three-dimensional structure of the enzyme was determined at 2.0 A resolution using the multiwavelength anomalous diffraction (MAD) method on the Escherichia coli protein containing selenomethionine residues. The homotrimer consists of an asymmetric assembly of monomers, each of which comprises two similar beta barrels and a C-terminal alpha helix. The similar beta barrels within the monomer confirm a prediction of pseudo two-fold symmetry that is inferred from the sequence similarity between the two halves of the protein. The beta barrels closely resemble folds found in phthalate dioxygenase reductase and other flavoproteins. CONCLUSIONS: The three active sites of the trimer are proposed to lie between pairs of monomers in which residues conserved among species reside, including two Asp-His-Ser triads and dyads of Cys-Ser and His-Thr. The proposed active sites are located where FMN (an analog of riboflavin) is modeled from an overlay of the beta barrels of phthalate dioxygenase reductase and riboflavin synthase. In the trimer, one active site is formed, and the other two active sites are wide open and exposed to solvent. The nature of the trimer configuration suggests that only one active site can be formed and be catalytically competent at a time.


Assuntos
Riboflavina Sintase/química , Sequência de Aminoácidos , Sítios de Ligação , Cristalografia por Raios X , Escherichia coli/enzimologia , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Quaternária de Proteína , Pteridinas/química , Riboflavina Sintase/genética , Especificidade por Substrato
12.
J Mol Biol ; 331(5): 1053-63, 2003 Aug 29.
Artigo em Inglês | MEDLINE | ID: mdl-12927541

RESUMO

Riboflavin synthase of Escherichia coli is a homotrimer with a molecular mass of 70 kDa. The enzyme catalyzes the dismutation of 6,7-dimethyl-8-(1'-D-ribityl)-lumazine, affording riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione. The N-terminal segment (residues 1-87) and the C-terminal segment (residues 98-187) form beta-barrels with similar fold and a high degree of sequence similarity. A recombinant peptide comprising amino acid residues 1-97 forms a dimer, which binds riboflavin with high affinity. Here, we report the structure of this construct in complex with riboflavin at 2.6A resolution. It is demonstrated that the complex can serve as a model for ligand-binding in the native enzyme. The structure and riboflavin-binding mode is in excellent agreement with structural information obtained from the native enzyme from Escherichia coli and riboflavin synthase from Schizosaccharomyces pombe. The implications for the binding specificity and the regiospecificity of the catalyzed reaction are discussed.


Assuntos
Riboflavina Sintase/química , Riboflavina/química , Sequência de Aminoácidos , Domínio Catalítico , Cristalografia por Raios X , Escherichia coli/enzimologia , Escherichia coli/genética , Substâncias Macromoleculares , Modelos Moleculares , Dados de Sequência Molecular , Dobramento de Proteína , Estrutura Terciária de Proteína , Subunidades Proteicas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Riboflavina/metabolismo , Riboflavina Sintase/genética , Riboflavina Sintase/metabolismo
13.
Mol Plant Microbe Interact ; 15(5): 456-62, 2002 May.
Artigo em Inglês | MEDLINE | ID: mdl-12036276

RESUMO

Genes contributing to riboflavin production in Sinorhizobium meliloti were identified, and bacterial strains that overproduce this vitamin were constructed to characterize how additional riboflavin affects interactions between alfalfa (Medicago sativa) and S. meliloti. Riboflavin-synthesis genes in S. meliloti were found in three separate linkage groups and designated as ribBA, ribDribC, and ribH for their similarities to Escherichia coli genes. The ribBA and ribC loci complemented corresponding E. coli rib mutants. S. meliloti cells containing extra copies of ribBA released 10 to 20% more riboflavin than a control strain but grew at similar rates in a defined medium lacking riboflavin. Cells carrying extra copies of ribBA colonized roots to densities that were 55% higher than that of a control strain. No effect of extra rib genes was detected on alfalfa grown in the absence or presence of combined N. These results support the importance of extracellular riboflavin for alfalfa root colonization by S. meliloti and are consistent with the hypothesis that this molecule benefits bacteria indirectly through an effect on the plant.


Assuntos
GTP Cicloidrolase/genética , Transferases Intramoleculares/genética , Medicago sativa/fisiologia , Riboflavina Sintase/genética , Riboflavina/biossíntese , Sinorhizobium/fisiologia , Simbiose/fisiologia , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/fisiologia , GTP Cicloidrolase/fisiologia , Transferases Intramoleculares/fisiologia , Medicago sativa/microbiologia , Dados de Sequência Molecular , Raízes de Plantas/microbiologia , Raízes de Plantas/fisiologia , Riboflavina/fisiologia , Riboflavina Sintase/fisiologia , Homologia de Sequência de Aminoácidos , Sinorhizobium/genética , Simbiose/genética
14.
BMC Biochem ; 4: 18, 2003 Dec 23.
Artigo em Inglês | MEDLINE | ID: mdl-14690539

RESUMO

BACKGROUND: Riboflavin synthase catalyzes the transformation of 6,7-dimethyl-8-ribityllumazine into riboflavin in the last step of the riboflavin biosynthetic pathway. Gram-negative bacteria and certain yeasts are unable to incorporate riboflavin from the environment and are therefore absolutely dependent on endogenous synthesis of the vitamin. Riboflavin synthase is therefore a potential target for the development of antiinfective drugs. RESULTS: A cDNA sequence from Schizosaccharomyces pombe comprising a hypothetical open reading frame with similarity to riboflavin synthase of Escherichia coli was expressed in a recombinant E. coli strain. The recombinant protein is a homotrimer of 23 kDa subunits as shown by sedimentation equilibrium centrifugation. The protein sediments at an apparent velocity of 4.1 S at 20 degrees C. The amino acid sequence is characterized by internal sequence similarity indicating two similar folding domains per subunit. The enzyme catalyzes the formation of riboflavin from 6,7-dimethyl-8-ribityllumazine at a rate of 158 nmol mg(-1) min(-1) with an apparent KM of 5.7 microM. 19F NMR protein perturbation experiments using fluorine-substituted intermediate analogs show multiple signals indicating that a given ligand can be bound in at least 4 different states. 19F NMR signals of enzyme-bound intermediate analogs were assigned to ligands bound by the N-terminal respectively C-terminal folding domain on basis of NMR studies with mutant proteins. CONCLUSION: Riboflavin synthase of Schizosaccharomyces pombe is a trimer of identical 23-kDa subunits. The primary structure is characterized by considerable similarity of the C-terminal and N-terminal parts. Riboflavin synthase catalyzes a mechanistically complex dismutation of 6,7-dimethyl-8-ribityllumazine affording riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione. The 19F NMR data suggest large scale dynamic mobility in the trimeric protein which may play an important role in the reaction mechanism.


Assuntos
Riboflavina Sintase/química , Schizosaccharomyces/enzimologia , Sequência de Aminoácidos , Flúor , Dados de Sequência Molecular , Mutação , Ressonância Magnética Nuclear Biomolecular , Pteridinas/metabolismo , Riboflavina/biossíntese , Riboflavina Sintase/genética , Riboflavina Sintase/metabolismo , Homologia de Sequência de Aminoácidos
15.
FEMS Microbiol Lett ; 191(2): 191-7, 2000 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-11024263

RESUMO

The functions of the riboflavin synthesis gene homologues ribA, ribBA, ribC, and ribD from Helicobacter pylori strain P1 were confirmed by complementation of defined Escherichia coli mutant strains. The H. pylori ribBA gene, which is similar to bifunctional ribBA genes of Gram-positive bacteria, fully complemented the ribB mutation and partially restored growth in a ribC mutant. However, ribBA did not complement the ribA mutation in E. coli, thus explaining the presence of the additional separate copy of the ribA gene in the H. pylori chromosome. In E. coli exclusively ribA conferred hemolytic activity and gave rise to production of molecules with fluorescence characteristics similar to flavins, as observed earlier. The E. coli hemolysin ClyA was not involved in causing the hemolytic phenotype. No riboflavin synthesis genes on plasmids conferred iron uptake functions to a siderophore-deficient mutant of E. coli. Marker exchange mutagenesis of the genes in H. pylori was not successful indicating that riboflavin synthesis is essential for basic metabolic functions of the gastric pathogen.


Assuntos
Aminoidrolases/genética , Proteínas de Bactérias/genética , GTP Cicloidrolase/genética , Helicobacter pylori/genética , Riboflavina Sintase/genética , Riboflavina/biossíntese , Aminoidrolases/química , Aminoidrolases/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Clonagem Molecular , Elementos de DNA Transponíveis , Escherichia coli/enzimologia , Escherichia coli/genética , Fluorescência , GTP Cicloidrolase/química , GTP Cicloidrolase/metabolismo , Genes Bacterianos , Teste de Complementação Genética , Helicobacter pylori/enzimologia , Hemólise , Ferro/metabolismo , Dados de Sequência Molecular , Mutagênese Insercional , Riboflavina Sintase/química , Riboflavina Sintase/metabolismo , Fosfatos Açúcares/metabolismo , Transformação Bacteriana
16.
J Microbiol ; 42(3): 194-9, 2004 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-15459647

RESUMO

Investigation of the expression of the riboflavin (rib) genes, which are found immediately downstream of luxG in the lux operon in Photobacterium phosphoreum, provides more information relevant to the evolution of bioluminescence, as well as to the regulation of supply of flavin substrate for bacterial bioluminescence reactions. In order to answer the question of whether or not the transcriptions of lux and rib genes are integrated, a transcriptional termination assay was performed with P. phosphoreum DNA, containing the possible stem-loop structures, located in the intergenic region of luxF and luxE (OmegaA), of luxG and ribE (OmegaB), and downstream of ribA (OmegaC). The expression of the CAT (Chloramphenicol Acetyl Transferase) reporter gene was remarkably decreased upon the insertion of the stem-loop structure (OmegaC) into the strong lux promoter and the reporter gene. However, the insertion of the structure (OmegaB) into the intergenic region of the lux and the rib genes caused no significant change in expression from the CAT gene. In addition, the single stranded DNA in the same region was protected by the P. phosphoreum mRNA from the S1 nuclease protection assay. These results suggest that lux genes and rib genes are part of the same operon in P. phosphoreum.


Assuntos
Regulação Bacteriana da Expressão Gênica , Luciferases/genética , Medições Luminescentes , Photobacterium/metabolismo , Riboflavina Sintase/genética , Riboflavina/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sequência de Bases , Luciferases/metabolismo , Dados de Sequência Molecular , Óperon , Photobacterium/genética , Photobacterium/crescimento & desenvolvimento , Mapeamento por Restrição , Riboflavina Sintase/metabolismo , Transcrição Gênica
17.
Mol Biol (Mosk) ; 24(1): 256-61, 1990.
Artigo em Russo | MEDLINE | ID: mdl-2112225

RESUMO

In vitro mutagenesis with methylhydroxylamine and nitrosomethylurea was used to obtain a number of Bacillus subtilis mutants impaired in flavin-dependent response. Mutants displayed varying degree of flavin-dependent repression of riboflavin synthase and of 6,7-dimethyl-8-ribityl-lumasine accumulation. Single nucleotide substitutions were detected by DNA sequencing in all of the mutants, affecting the 48 b.p. target area between the mRNA start and the AUG of the first gene.


Assuntos
Bacillus subtilis/genética , DNA Bacteriano/genética , Óperon , Sequências Reguladoras de Ácido Nucleico , Riboflavina/genética , Bacillus subtilis/enzimologia , Bacillus subtilis/metabolismo , Regulação Bacteriana da Expressão Gênica , Genes Bacterianos , Dados de Sequência Molecular , Mutação , Riboflavina/biossíntese , Riboflavina Sintase/genética , Riboflavina Sintase/metabolismo
18.
Genetika ; 14(9): 1530-8, 1978 Sep.
Artigo em Russo | MEDLINE | ID: mdl-102564

RESUMO

Numerous operator-constitutive mutants of riboflavin biosynthesis were selected. All of them map in a short region of the Bacillus subtilis chromosome. The yield of riboflavin synthetase from this mutant is different, but in most cases much lower than the maximal yield from a repressor minus strain. Our tentative explanation is a partial overlap of the sites for the adsorption of repressor and RNA-polymerase. Therefore the affinity to the transcribing enzyme is diminished in the operator constitutive strains. The affinity of the repressor-effector complex to the operator depends on the effector structure.


Assuntos
Bacillus subtilis/genética , Genes Reguladores , Óperon , Riboflavina/genética , Mutação , Riboflavina Sintase/genética , Transformação Bacteriana
19.
Genetika ; 29(6): 922-7, 1993 Jun.
Artigo em Russo | MEDLINE | ID: mdl-8370504

RESUMO

The RIB7 gene encoding the enzyme of the final stage of riboflavin biosynthesis in Pichia guilliermondii--riboflavin synthase was cloned on the pFL38 shuttle vector as the Sau3A fragment of the chromosomal DNA of about 4 kb. The HindIII fragment of 1.4 kb was subcloned from the hybrid plasmid pFR7 obtained onto the pUC18 plasmid. The plasmid pR7 thus constructed transform Escherichia coli ribB-45 mutant cells with a blocked riboflavin synthase approximately at the same frequency as pFR7. High riboflavin synthase activity was discovered in the E. coli transformants carrying pR7 but not pFR7. Using both plasmids we also complemented rib17 mutant of P. guilliermondii.


Assuntos
Regulação Fúngica da Expressão Gênica/fisiologia , Código Genético , Pichia/genética , Riboflavina Sintase/genética , Clonagem Molecular , Mutação , Pichia/enzimologia , Transformação Genética
20.
Genetika ; 13(5): 880-7, 1977.
Artigo em Russo | MEDLINE | ID: mdl-205483

RESUMO

Activities of riboflavinkinase and riboflavinsynthetase were measured in 15 strains of Bacillus subtilis with different genotype. The increased level of riboflavinkinase was observed in strains, resistant to lumiflavin or lumichrome. Specific activity of riboflavinkinase was found to be about 100 times lower than that of riboflavinsynthetase. The regulation of biosynthesis of these enzymes seems to proceed non-coordinately. This phenomenon can be the sequence of the existence of many operators, controlling the flavinogenesis in Bac. subtilis.


Assuntos
Bacillus subtilis/genética , Óperon , Fosfotransferases/genética , Riboflavina Sintase/genética , Riboflavina/biossíntese , Transferases/genética , Bacillus subtilis/metabolismo , Sistema Livre de Células , Relação Dose-Resposta a Droga , Ativação Enzimática , Flavina-Adenina Dinucleotídeo/biossíntese , Genótipo
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