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1.
BMC Plant Biol ; 21(1): 409, 2021 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-34493224

RESUMO

BACKGROUND: The periderm is a protective barrier crucial for land plant survival, but little is known about genetic factors involved in its development and regulation. Using a transcriptomic approach in the cork oak (Q. suber) periderm, we previously identified an RS2-INTERACTING KH PROTEIN (RIK) homologue of unknown function containing a K homology (KH)-domain RNA-binding protein, as a regulatory candidate gene in the periderm. RESULTS: To gain insight into the function of RIK in the periderm, potato (S. tuberosum) tuber periderm was used as a model: the full-length coding sequence of RIK, hereafter referred to as StRIK, was isolated, the transcript profile analyzed and gene silencing in potato performed to analyze the silencing effects on periderm anatomy and transcriptome. The StRIK transcript accumulated in all vegetative tissues studied, including periderm and other suberized tissues such as root and also in wounded tissues. Downregulation of StRIK in potato by RNA interference (StRIK-RNAi) did not show any obvious effects on tuber periderm anatomy but, unlike Wild type, transgenic plants flowered. Global transcript profiling of the StRIK-RNAi periderm did show altered expression of genes associated with RNA metabolism, stress and signaling, mirroring the biological processes found enriched within the in silico co-expression network of the Arabidopsis orthologue. CONCLUSIONS: The ubiquitous expression of StRIK transcript, the flower associated phenotype and the differential expression of StRIK-RNAi periderm point out to a general regulatory role of StRIK in diverse plant developmental processes. The transcriptome analysis suggests that StRIK might play roles in RNA maturation and stress response in the periderm.


Assuntos
Proteínas de Plantas/genética , Tubérculos/genética , RNA de Plantas/metabolismo , Solanum tuberosum/genética , Estresse Fisiológico/genética , Arabidopsis/genética , Núcleo Celular/genética , Núcleo Celular/metabolismo , Elementos de DNA Transponíveis , Flores/genética , Flores/fisiologia , Regulação da Expressão Gênica de Plantas , Redes Reguladoras de Genes , Inativação Gênica , Proteínas de Plantas/metabolismo , Tubérculos/anatomia & histologia , Tubérculos/citologia , Plantas Geneticamente Modificadas , Solanum tuberosum/citologia
2.
Plant Cell Rep ; 39(11): 1415-1424, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-32696230

RESUMO

KEY MESSAGE: This study established a rapid method for the gene expression analysis in potato tubers. The use of microtubers would be useful for primary evaluation of tuber-expressed genes. In the development of transgenic potato or of potato with other genome modifications (e.g., genome editing or RNA-directed DNA methylation (RdDM) and so on) to improve tuber traits, analysis of the target gene is often difficult because of the long cultivation cycle (3-4 months), large areas required, numerous materials for plant cultivation, and considerable efforts needed to obtain transgenic tubers. We demonstrate here rapid and convenient analysis of gene expression in potato microtubers. Enough microtubers for expression analysis can be induced over about 4 weeks in a simple liquid medium in an Erlenmeyer flask. High-quality RNA and protein can be easily prepared from microtubers and used for northern blot, qRT-PCR, and western blot analyses without further purification. We investigated the expression of two tuber-expressed genes (GBSS1 and Vinv) in microtubers derived from the wild-type and from lines derived from RdDM-mediated transcriptional gene silencing. As expected, the expression of both genes was similar between microtubers and normal tubers. Furthermore, we demonstrated that microtubers can be used in western blot and confocal immunofluorescent microscopy analyses. These results suggest that expression analysis using microtubers is a convenient tool for the analysis of tuber-expressed genes such as GBSS1 and Vinv in potato.


Assuntos
Perfilação da Expressão Gênica/métodos , Proteínas de Plantas/genética , Tubérculos/genética , Solanum tuberosum/genética , Técnicas de Cultura de Tecidos/métodos , Western Blotting , Meios de Cultura , Regulação da Expressão Gênica de Plantas , Inativação Gênica , Microscopia de Fluorescência , Proteínas de Plantas/metabolismo , Brotos de Planta/citologia , Tubérculos/citologia , Tubérculos/crescimento & desenvolvimento , Plantas Geneticamente Modificadas , RNA de Plantas
3.
Int J Mol Sci ; 21(14)2020 Jul 21.
Artigo em Inglês | MEDLINE | ID: mdl-32708125

RESUMO

Carnivorous plants from the Lentibulariaceae form a variety of standard and novel vegetative organs and survive unfavorable environmental conditions. Within Genlisea, only G. tuberosa, from the Brazilian Cerrado, formed tubers, while Utricularia menziesii is the only member of the genus to form seasonally dormant tubers. We aimed to examine and compare the tuber structure of two taxonomically and phylogenetically divergent terrestrial carnivorous plants: Genlisea tuberosa and Utricularia menziesii. Additionally, we analyzed tubers of U. mannii. We constructed phylogenetic trees using chloroplast genes matK/trnK and rbcL and used studied characters for ancestral state reconstruction. All examined species contained mainly starch as histologically observable reserves. The ancestral state reconstruction showed that specialized organs such as turions evolved once and tubers at least 12 times from stolons in Lentibulariaceae. Different from other clades, tubers probably evolved from thick stolons for sect. Orchidioides and both structures are primarily water storage structures. In contrast to species from section Orchidioides, G. tuberosa, U. menziesii and U. mannii form starchy tubers. In G. tuberosa and U. menziesii, underground tubers provide a perennating bud bank that protects the species in their fire-prone and seasonally desiccating environments.


Assuntos
Planta Carnívora/anatomia & histologia , Planta Carnívora/genética , Cloroplastos/genética , Lamiales/genética , Tubérculos/anatomia & histologia , Estresse Fisiológico/fisiologia , Planta Carnívora/citologia , Planta Carnívora/ultraestrutura , Lamiales/anatomia & histologia , Lamiales/citologia , Lamiales/ultraestrutura , Microscopia Eletrônica de Varredura , Filogenia , Tubérculos/citologia , Tubérculos/genética , Tubérculos/ultraestrutura , Amido/metabolismo , Estresse Fisiológico/genética , Água/metabolismo
4.
Plant Biotechnol J ; 15(1): 56-67, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27307093

RESUMO

Potato tuber is a high yielding food crop known for its high levels of starch accumulation but only negligible levels of triacylglycerol (TAG). In this study, we evaluated the potential for lipid production in potato tubers by simultaneously introducing three transgenes, including WRINKLED 1 (WRI1), DIACYLGLYCEROL ACYLTRANSFERASE 1 (DGAT1) and OLEOSIN under the transcriptional control of tuber-specific (patatin) and constitutive (CaMV-35S) promoters. This coordinated metabolic engineering approach resulted in over a 100-fold increase in TAG accumulation to levels up to 3.3% of tuber dry weight (DW). Phospholipids and galactolipids were also found to be significantly increased in the potato tuber. The increase of lipids in these transgenic tubers was accompanied by a significant reduction in starch content and an increase in soluble sugars. Microscopic examination revealed that starch granules in the transgenic tubers had more irregular shapes and surface indentations when compared with the relatively smooth surfaces of wild-type starch granules. Ultrastructural examination of lipid droplets showed their close proximity to endoplasmic reticulum and mitochondria, which may indicate a dynamic interaction with these organelles during the processes of lipid biosynthesis and turnover. Increases in lipid levels were also observed in the transgenic potato leaves, likely due to the constitutive expression of DGAT1 and incomplete tuber specificity of the patatin promoter. This study represents an important proof-of-concept demonstration of oil increase in tubers and provides a model system to further study carbon reallocation during development of nonphotosynthetic underground storage organs.


Assuntos
Regulação da Expressão Gênica de Plantas/genética , Melhoramento Genético/métodos , Engenharia Metabólica/métodos , Óleos de Plantas/metabolismo , Tubérculos/genética , Tubérculos/metabolismo , Solanum tuberosum/genética , Carboidratos/análise , Ácidos Graxos/análise , Ácidos Graxos/química , Ácidos Graxos/metabolismo , Galactolipídeos/metabolismo , Genes de Plantas , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Microscopia de Fluorescência , Fosfolipídeos/metabolismo , Óleos de Plantas/análise , Óleos de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Tubérculos/citologia , Plantas Geneticamente Modificadas , Solanum tuberosum/citologia , Amido/análise , Amido/metabolismo , Transformação Genética , Triglicerídeos/metabolismo
5.
Physiol Plant ; 159(2): 244-261, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27716933

RESUMO

Among many factors that regulate potato tuberization, calcium and calcium-dependent protein kinases (CDPKs) play an important role. CDPK activity increases at the onset of tuber formation with StCDPK1 expression being strongly induced in swollen stolons. However, not much is known about the transcriptional and posttranscriptional regulation of StCDPK1 or its downstream targets in potato development. To elucidate further, we analyzed its expression in different tissues and stages of the life cycle. Histochemical analysis of StCDPK1::GUS (ß-glucuronidase) plants demonstrated that StCDPK1 is strongly associated with the vascular system in stems, roots, during stolon to tuber transition, and in tuber sprouts. In agreement with the observed GUS profile, we found specific cis-acting elements in StCDPK1 promoter. In silico analysis predicted miR390 to be a putative posttranscriptional regulator of StCDPK1. Quantitative real time-polymerase chain reaction (qRT-PCR) analysis showed ubiquitous expression of StCDPK1 in different tissues which correlated well with Western blot data except in leaves. On the contrary, miR390 expression exhibited an inverse pattern in leaves and tuber eyes suggesting a possible regulation of StCDPK1 by miR390. This was further confirmed by Agrobacterium co-infiltration assays. In addition, in vitro assays showed that recombinant StCDPK1-6xHis was able to phosphorylate the hydrophilic loop of the auxin efflux carrier StPIN4. Altogether, these results indicate that StCDPK1 expression is varied in a tissue-specific manner having significant expression in vasculature and in tuber eyes; is regulated by miR390 at posttranscriptional level and suggest that StPIN4 could be one of its downstream targets revealing the overall role of this kinase in potato development.


Assuntos
Regulação da Expressão Gênica de Plantas , MicroRNAs/genética , Proteínas Quinases/metabolismo , Solanum tuberosum/enzimologia , Regulação Enzimológica da Expressão Gênica , Genes Reporter , Ácidos Indolacéticos/metabolismo , Proteínas de Membrana Transportadoras , Especificidade de Órgãos , Fosforilação , Reguladores de Crescimento de Plantas/metabolismo , Folhas de Planta/citologia , Folhas de Planta/enzimologia , Folhas de Planta/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Raízes de Plantas/citologia , Raízes de Plantas/enzimologia , Raízes de Plantas/genética , Tubérculos/citologia , Tubérculos/enzimologia , Tubérculos/genética , Plantas Geneticamente Modificadas , Regiões Promotoras Genéticas/genética , Proteínas Quinases/genética , Processamento Pós-Transcricional do RNA , RNA de Plantas/genética , Solanum tuberosum/citologia , Solanum tuberosum/genética , Solanum tuberosum/crescimento & desenvolvimento
6.
Phytopathology ; 107(1): 132-137, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-27819539

RESUMO

Fungi can modify the pH in or around the infected site via alkalization or acidification, and pH monitoring may provide valuable information on host-fungus interactions. The objective of the present study was to examine the ability of two fungi, Colletotrichum coccodes and Helminthosporium solani, to modify the pH of potato tubers during artificial inoculation in situ. Both fungi cause blemishes on potato tubers, which downgrades tuber quality and yield. Direct visualization and estimation of pH changes near the inoculation area were achieved using pH indicators and image analysis. The results showed that the pH of the area infected by either fungus increased from potato native pH of approximately 6.0 to 7.4 to 8.0. By performing simple analysis of the images, it was also possible to derive the growth curve of each fungus and estimate the lag phase of the radial growth: 10 days for C. coccodes and 17 days H. solani. In addition, a distinctive halo (an edge area with increased pH) was observed only during the lag phase of H. solani infection. pH modulation is a major factor in pathogen-host interaction and the proposed method offers a simple and rapid way to monitor these changes.


Assuntos
Colletotrichum/fisiologia , Helminthosporium/fisiologia , Interações Hospedeiro-Patógeno , Doenças das Plantas/microbiologia , Solanum tuberosum/microbiologia , Concentração de Íons de Hidrogênio , Tubérculos/química , Tubérculos/citologia , Tubérculos/microbiologia , Solanum tuberosum/química , Solanum tuberosum/citologia
7.
Plant J ; 74(6): 1059-71, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23551340

RESUMO

In comparison with the technology platforms developed to localize transcripts and proteins, imaging tools for visualization of metabolite distributions in plant tissues are less well developed and lack versatility. This hampers our understanding of plant metabolism and dynamics. In this study, we demonstrate that desorption electrospray ionization mass spectrometry imaging (DESI-MSI) of tissue imprints on porous Teflon may be used to accurately image the distribution of even labile plant metabolites such as hydroxynitrile glucosides, which normally undergo enzymatic hydrolysis by specific ß-glucosidases upon cell disruption. This fast and simple sample preparation resulted in no substantial differences in the distribution and ratios of all hydroxynitrile glucosides between leaves from wild-type Lotus japonicus and a ß-glucosidase mutant plant that lacks the ability to hydrolyze certain hydroxynitrile glucosides. In wild-type, the enzymatic conversion of hydroxynitrile glucosides and the concomitant release of glucose were easily visualized when a restricted area of the leaf tissue was damaged prior to sample preparation. The gene encoding the first enzyme in hydroxynitrile glucoside biosynthesis in L. japonicus leaves, CYP79D3, was found to be highly expressed during the early stages of leaf development, and the hydroxynitrile glucoside distribution in mature leaves reflected this early expression pattern. The utility of direct DESI-MSI of plant tissue was demonstrated using cryo-sections of cassava (Manihot esculenta) tubers. The hydroxynitrile glucoside levels were highest in the outer cell layers, as verified by LC-MS analyses. The unexpected discovery of a hydroxynitrile-derived di-glycoside shows the potential of DESI-MSI to discover and guide investigations into new metabolic routes.


Assuntos
Sistema Enzimático do Citocromo P-450/metabolismo , Glucosídeos/metabolismo , Lotus/metabolismo , Manihot/metabolismo , Sorghum/metabolismo , Espectrometria de Massas por Ionização por Electrospray/métodos , Cromatografia Líquida , Sistema Enzimático do Citocromo P-450/genética , Genes Reporter , Glucosídeos/química , Hidrólise , Lotus/química , Lotus/citologia , Lotus/genética , Manihot/química , Manihot/citologia , Espectrometria de Massas , Mutação , Nitrilas/química , Nitrilas/metabolismo , Folhas de Planta/química , Folhas de Planta/citologia , Folhas de Planta/metabolismo , Tubérculos/química , Tubérculos/citologia , Tubérculos/metabolismo , Regiões Promotoras Genéticas/genética , Plântula/química , Plântula/citologia , Plântula/metabolismo , Sorghum/química , Espectrometria de Massas por Ionização por Electrospray/instrumentação , beta-Glucosidase/metabolismo
8.
Plant Biotechnol J ; 12(4): 492-502, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24428422

RESUMO

Pectin is a complex polysaccharide and an integral part of the primary plant cell wall and middle lamella, contributing to cell wall mechanical strength and cell adhesion. To understand the structure-function relationships of pectin in the cell wall, a set of transgenic potato lines with altered pectin composition was analysed. The expression of genes encoding enzymes involved in pectin acetylation, degradation of the rhamnogalacturonan backbone and type and length of neutral side chains, arabinan and galactan in particular, has been altered. Upon crossing of different transgenic lines, some transgenes were not transmitted to the next generation when these lines were used as a pollen donor, suggesting male sterility. Viability of mature pollen was severely decreased in potato lines with reduced pectic arabinan, but not in lines with altered galactan side chains. Anthers and pollen of different developmental stages were microscopically examined to study the phenotype in more detail. Scanning electron microscopy of flowers showed collapsed pollen grains in mature anthers and in earlier stages cytoplasmic protrusions at the site of the of kin pore, eventually leading to bursting of the pollen grain and leaking of the cytoplasm. This phenomenon is only observed after the microspores are released and the tapetum starts to degenerate. Timing of the phenotype indicates a role for pectic arabinan side chains during remodelling of the cell wall when the pollen grain is maturing and dehydrating.


Assuntos
Parede Celular/metabolismo , Pectinas/metabolismo , Pólen/citologia , Pólen/crescimento & desenvolvimento , Polissacarídeos/metabolismo , Solanum tuberosum/citologia , Segregação de Cromossomos , Cruzamentos Genéticos , Dosagem de Genes , Monossacarídeos/metabolismo , Fenótipo , Infertilidade das Plantas/genética , Tubérculos/citologia , Tubérculos/metabolismo , Plantas Geneticamente Modificadas , Pólen/anatomia & histologia , Pólen/ultraestrutura , Solanum tuberosum/genética , Solanum tuberosum/ultraestrutura , Transformação Genética , Transgenes/genética
9.
Plant Physiol ; 158(4): 2053-67, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22362870

RESUMO

Potato (Solanum tuberosum) tuber, a swollen underground stem, is used as a model system for the study of dormancy release and sprouting. Natural dormancy release, at room temperature, is initiated by tuber apical bud meristem (TAB-meristem) sprouting characterized by apical dominance (AD). Dormancy is shortened by treatments such as bromoethane (BE), which mimics the phenotype of dormancy release in cold storage by inducing early sprouting of several buds simultaneously. We studied the mechanisms governing TAB-meristem dominance release. TAB-meristem decapitation resulted in the development of increasing numbers of axillary buds with time in storage, suggesting the need for autonomous dormancy release of each bud prior to control by the apical bud. Hallmarks of programmed cell death (PCD) were identified in the TAB-meristems during normal growth, and these were more extensive when AD was lost following either extended cold storage or BE treatment. Hallmarks included DNA fragmentation, induced gene expression of vacuolar processing enzyme1 (VPE1), and elevated VPE activity. VPE1 protein was semipurified from BE-treated apical buds, and its endogenous activity was fully inhibited by a cysteinyl aspartate-specific protease-1-specific inhibitor N-Acetyl-Tyr-Val-Ala-Asp-CHO (Ac-YVAD-CHO). Transmission electron microscopy further revealed PCD-related structural alterations in the TAB-meristem of BE-treated tubers: a knob-like body in the vacuole, development of cytoplasmic vesicles, and budding-like nuclear segmentations. Treatment of tubers with BE and then VPE inhibitor induced faster growth and recovered AD in detached and nondetached apical buds, respectively. We hypothesize that PCD occurrence is associated with the weakening of tuber AD, allowing early sprouting of mature lateral buds.


Assuntos
Apoptose , Flores/citologia , Meristema/citologia , Tubérculos/citologia , Tubérculos/crescimento & desenvolvimento , Solanum tuberosum/citologia , Solanum tuberosum/crescimento & desenvolvimento , Sequência de Aminoácidos , Apoptose/efeitos dos fármacos , Núcleo Celular/efeitos dos fármacos , Núcleo Celular/metabolismo , Núcleo Celular/ultraestrutura , Forma do Núcleo Celular/efeitos dos fármacos , Temperatura Baixa , Fragmentação do DNA/efeitos dos fármacos , Flores/efeitos dos fármacos , Flores/ultraestrutura , Hidrocarbonetos Bromados/farmacologia , Meristema/efeitos dos fármacos , Meristema/metabolismo , Meristema/ultraestrutura , Dados de Sequência Molecular , Oligopeptídeos/farmacologia , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Tubérculos/efeitos dos fármacos , Tubérculos/ultraestrutura , Preservação Biológica , Solanum tuberosum/efeitos dos fármacos , Solanum tuberosum/ultraestrutura
10.
J Exp Bot ; 63(8): 3011-29, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22378944

RESUMO

Parenchyma cells from tubers of Solanum tuberosum L. convert several externally supplied sugars to starch but the rates vary largely. Conversion of glucose 1-phosphate to starch is exceptionally efficient. In this communication, tuber slices were incubated with either of four solutions containing equimolar [U-¹4C]glucose 1-phosphate, [U-¹4C]sucrose, [U-¹4C]glucose 1-phosphate plus unlabelled equimolar sucrose or [U-¹4C]sucrose plus unlabelled equimolar glucose 1-phosphate. C¹4-incorporation into starch was monitored. In slices from freshly harvested tubers each unlabelled compound strongly enhanced ¹4C incorporation into starch indicating closely interacting paths of starch biosynthesis. However, enhancement disappeared when the tubers were stored. The two paths (and, consequently, the mutual enhancement effect) differ in temperature dependence. At lower temperatures, the glucose 1-phosphate-dependent path is functional, reaching maximal activity at approximately 20 °C but the flux of the sucrose-dependent route strongly increases above 20 °C. Results are confirmed by in vitro experiments using [U-¹4C]glucose 1-phosphate or adenosine-[U-¹4C]glucose and by quantitative zymograms of starch synthase or phosphorylase activity. In mutants almost completely lacking the plastidial phosphorylase isozyme(s), the glucose 1-phosphate-dependent path is largely impeded. Irrespective of the size of the granules, glucose 1-phosphate-dependent incorporation per granule surface area is essentially equal. Furthermore, within the granules no preference of distinct glucosyl acceptor sites was detectable. Thus, the path is integrated into the entire granule biosynthesis. In vitro C¹4C-incorporation into starch granules mediated by the recombinant plastidial phosphorylase isozyme clearly differed from the in situ results. Taken together, the data clearly demonstrate that two closely but flexibly interacting general paths of starch biosynthesis are functional in potato tuber cells.


Assuntos
Ciclo do Carbono , Solanum tuberosum/citologia , Solanum tuberosum/metabolismo , Amido/metabolismo , Ciclo do Carbono/efeitos dos fármacos , Isótopos de Carbono , Misturas Complexas , Glucanos/metabolismo , Glucofosfatos/farmacologia , Isoenzimas/metabolismo , Tubérculos/citologia , Tubérculos/efeitos dos fármacos , Tubérculos/fisiologia , Tubérculos/ultraestrutura , Plantas Geneticamente Modificadas , Plastídeos/efeitos dos fármacos , Plastídeos/enzimologia , Polissacarídeos/metabolismo , Solanum tuberosum/genética , Solanum tuberosum/fisiologia , Solubilidade/efeitos dos fármacos , Amido/ultraestrutura , Amido Fosforilase/metabolismo , Sintase do Amido/metabolismo , Sacarose/farmacologia , Temperatura
11.
Plant Mol Biol ; 73(6): 697-704, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20506035

RESUMO

Subcellular localization of mRNA is a widespread and efficient way for targeting proteins to specific regions of a cell. Messenger RNA sorting appears as a key mechanism for posttranscriptional gene regulation, and its involvement in organelle biogenesis has been described in different organisms. Here we demonstrate that mRNA targeting to the surface of mitochondria occurs in higher plants. Cytosolic mRNAs corresponding to mitochondrial proteins, but also to some particular cytosolic proteins, were found associated to mitochondria, offering new perspectives for mitochondria biogenesis in plant cells.


Assuntos
Mitocôndrias/metabolismo , Plantas/genética , RNA Mensageiro/metabolismo , RNA de Plantas/metabolismo , Northern Blotting , Western Blotting , Citosol/metabolismo , Proteínas Mitocondriais/genética , Proteínas Mitocondriais/metabolismo , Células Vegetais , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Tubérculos/citologia , Tubérculos/genética , Tubérculos/metabolismo , Plantas/metabolismo , Transporte de RNA , RNA Mensageiro/genética , RNA de Plantas/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Solanum tuberosum/citologia , Solanum tuberosum/genética , Solanum tuberosum/metabolismo
12.
New Phytol ; 185(3): 663-75, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20028468

RESUMO

Reserve starch is an important plant product but the actual biosynthetic process is not yet fully understood. Potato (Solanum tuberosum) tuber discs from various transgenic plants were used to analyse the conversion of external sugars or sugar derivatives to starch. By using in vitro assays, a direct glucosyl transfer from glucose 1-phosphate to native starch granules as mediated by recombinant plastidial phosphorylase was analysed. Compared with labelled glucose, glucose 6-phosphate or sucrose, tuber discs converted externally supplied [(14)C]glucose 1-phosphate into starch at a much higher rate. Likewise, tuber discs from transgenic lines with a strongly reduced expression of cytosolic phosphoglucomutase, phosphorylase or transglucosidase converted glucose 1-phosphate to starch with the same or even an increased rate compared with the wild-type. Similar results were obtained with transgenic potato lines possessing a strongly reduced activity of both the cytosolic and the plastidial phosphoglucomutase. Starch labelling was, however, significantly diminished in transgenic lines, with a reduced concentration of the plastidial phosphorylase isozymes. Two distinct paths of reserve starch biosynthesis are proposed that explain, at a biochemical level, the phenotype of several transgenic plant lines.


Assuntos
Glucofosfatos/metabolismo , Tubérculos/citologia , Tubérculos/metabolismo , Solanum tuberosum/metabolismo , Amido/biossíntese , Carbono/metabolismo , Isótopos de Carbono , Citosol/enzimologia , Glucosiltransferases/metabolismo , Isoenzimas/metabolismo , Fosfoglucomutase/metabolismo , Fosforilases/metabolismo , Tubérculos/enzimologia , Plantas Geneticamente Modificadas , Plastídeos/metabolismo , Solanum tuberosum/enzimologia , Solanum tuberosum/genética
13.
Sci Data ; 7(1): 371, 2020 10 27.
Artigo em Inglês | MEDLINE | ID: mdl-33110087

RESUMO

We present a new large-scale three-fold annotated microscopy image dataset, aiming to advance the plant cell biology research by exploring different cell microstructures including cell size and shape, cell wall thickness, intercellular space, etc. in deep learning (DL) framework. This dataset includes 9,811 unstained and 6,127 stained (safranin-o, toluidine blue-o, and lugol's-iodine) images with three-fold annotation including physical, morphological, and tissue grading based on weight, different section area, and tissue zone respectively. In addition, we prepared ground truth segmentation labels for three different tuber weights. We have validated the pertinence of annotations by performing multi-label cell classification, employing convolutional neural network (CNN), VGG16, for unstained and stained images. The accuracy has been achieved up to 0.94, while, F2-score reaches to 0.92. Furthermore, the ground truth labels have been verified by semantic segmentation algorithm using UNet architecture which presents the mean intersection of union up to 0.70. Hence, the overall results show that the data are very much efficient and could enrich the domain of microscopy plant cell analysis for DL-framework.


Assuntos
Aprendizado Profundo , Microscopia , Células Vegetais , Tubérculos/citologia , Solanum tuberosum/citologia , Processamento de Imagem Assistida por Computador , Redes Neurais de Computação
14.
Plant Sci ; 298: 110597, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32771154

RESUMO

Anthocyanins are antioxidant pigments widely used in drugs and food preparations. Flesh-coloured tubers of the cultivated potato Solanum tuberosum are important sources of different anthocyanins. Due to the high degree of decoration achieved by acylation, anthocyanins from potato are very stable and suitable for the food processing industry. The use of cell culture allows to extract anthocyanins on-demand, avoiding seasonality and consequences associated with land-based-tuber production. However, a well-known limit of cell culture is the metabolic instability and loss of anthocyanin production during successive subcultures. To get a general picture of mechanisms responsible for this instability, we explored both genetic and epigenetic regulation that may affect anthocyanin production in cell culture. We selected two clonally related populations of anthocyanin-producing (purple) and non-producing (white) potato cells. Through targeted molecular investigations, we identified and functionally characterized an R3-MYB, here named StMYBATV. This transcription factor can interact with bHLHs belonging to the MBW (R2R3-MYB, bHLH and WD40) anthocyanin activator complex and, potentially, may interfere with its formation. Genome methylation analysis revealed that, for several genomic loci, anthocyanin-producing cells were more methylated than clonally related white cells. In particular, we localized some methylation events in ribosomal protein-coding genes. Overall, our study explores novel molecular aspects associated with loss of anthocyanins in cell culture systems.


Assuntos
Antocianinas/biossíntese , Técnicas de Cultura de Células , Epigênese Genética , Células Vegetais/metabolismo , Tubérculos/metabolismo , Solanum tuberosum/metabolismo , Antocianinas/genética , Epigênese Genética/fisiologia , Tubérculos/citologia , Solanum tuberosum/citologia , Solanum tuberosum/genética
15.
Proteomics ; 9(17): 4154-75, 2009 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-19688748

RESUMO

Proteins from potato (Solanum tuberosum L.) tuber slices, related to the wound-healing process, were separated by 2-DE and identified by an MS analysis in MS and MS/MS mode. Slicing triggered differentiation processes that lead to changes in metabolism, activation of defence and cell-wall reinforcement. Proteins related to storage, cell growth and division, cell structure, signal transduction, energy production, disease/defence mechanisms and secondary metabolism were detected. Image analysis of the 2-DE gels revealed a time-dependent change in the complexity of the polypeptide patterns. By microscopic observation the polyalyphatic domain of suberin was clearly visible by D4, indicating that a closing layer (primary suberisation) was formed by then. A PCA of the six sampling dates revealed two time phases, D0-D2 and D4-D8, with a border position between D2 and D4. Moreover, a PCA of differentially expressed proteins indicated the existence of a succession of proteomic events leading to wound-periderm reconstruction. Some late-expressed proteins (D6-D8), including a suberisation-associated anionic peroxidase, have also been identified in the native periderm. Despite this, protein patterns of D8 slices and native periderm were still different, suggesting that the processes of wound-periderm formation are extended in time and not fully equivalent. The information presented in this study gives clues for further work on wound healing-periderm formation processes.


Assuntos
Doenças das Plantas , Tubérculos/metabolismo , Proteômica , Solanum tuberosum/metabolismo , Eletroforese em Gel Bidimensional , Perfilação da Expressão Gênica , Espectrometria de Massas , Peptídeos/química , Proteínas de Plantas/análise , Proteínas de Plantas/química , Tubérculos/citologia , Análise de Componente Principal , Solanum tuberosum/citologia
16.
Ann Bot ; 103(2): 295-302, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18515404

RESUMO

BACKGROUND AND AIMS: In recent years, Cyperus rotundus has become a problem weed in lowland rice (Oryza sativa) grown in rotation with vegetables in the Philippines. As the growth of C. rotundus is commonly suppressed by prolonged flooding, the ability of the weed to grow vigorously in flooded as well as upland conditions suggests that adapted ecotypes occur in these rotations. Studies were conducted to elucidate the mechanisms that permit C. rotundus to tolerate flooded soil conditions. METHODS: Upland and lowland ecotypes of C. rotundus were compared in terms of growth habit, carbohydrate reserves and metabolism, and activities of enzymes involved in alcoholic fermentation - alcohol dehydrogenase (ADH) and pyruvate decarboxylase (PDC). KEY RESULTS: The lowland ecotype has much larger tubers than the upland ecotype. Prior to germination, the amylase activity and total non-structural carbohydrate content in the form of soluble sugars were greater in the tubers of lowland plants than in those of upland C. rotundus. At 24 h after germination in hypoxic conditions, PDC and ADH activities in the lowland plants increased, before decreasing at 48 h following germination. In contrast, ADH and PDC activities in the upland plants increased from 24 to 48 h after germination. CONCLUSIONS: Tolerance of lowland C. rotundus of flooding may be attributed to large carbohydrate content and amylase activity, and the ability to maintain high levels of soluble sugars in the tubers during germination and early growth. This is coupled with the modulation of ADH and PDC activities during germination, possibly to control the use of carbohydrate reserves and sustain substrate supply in order to avoid starvation and death of seedlings with prolonged flooding.


Assuntos
Adaptação Fisiológica , Agricultura , Metabolismo dos Carboidratos , Cyperus/fisiologia , Inundações , Oryza/fisiologia , Tubérculos/anatomia & histologia , Álcool Desidrogenase/metabolismo , Amilases/metabolismo , Biomassa , Hipóxia Celular , Cyperus/enzimologia , Raízes de Plantas/citologia , Raízes de Plantas/enzimologia , Tubérculos/citologia , Tubérculos/enzimologia , Piruvato Descarboxilase/metabolismo , Solubilidade , Amido/metabolismo
17.
Tsitol Genet ; 43(3): 20-5, 2009.
Artigo em Ucraniano | MEDLINE | ID: mdl-19938633

RESUMO

Antitumor and antibacterial activity of complex preparations consisting of yeast mannan, diacetile-2,4-dioxohexahidro-1,3,5-triasine, cianohyanidine, alcansulfonic acids (emulsifier E-30), and microbial metabolites was studied. The investigation was carrying out on explants of tuber potato parenchyma infected by Agrobacterium tumefaciens. We found that preparations have the antitumor activity. The most activity was exhibited by addition of preparations to the cultural medium and treatment of explants before of infection.


Assuntos
Agrobacterium tumefaciens/efeitos dos fármacos , Antibacterianos/farmacologia , Tubérculos/microbiologia , Tumores de Planta/microbiologia , Solanum tuberosum/microbiologia , Agrobacterium tumefaciens/crescimento & desenvolvimento , Contagem de Colônia Microbiana , Meios de Cultura , Doenças das Plantas/microbiologia , Doenças das Plantas/prevenção & controle , Tubérculos/citologia , Tubérculos/efeitos dos fármacos , Solanum tuberosum/citologia , Solanum tuberosum/efeitos dos fármacos
18.
Food Chem ; 279: 416-425, 2019 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-30611509

RESUMO

Macronutrients in whole plant foods are enclosed inside cells. The metabolic response from these entrapped nutrients may depend on cell-wall porosity, by controlling the passage of digestive enzymes. As non-interacting size mimics of digestive enzymes, we investigated the diffusion of fluorescently-labelled probes across the walls of isolated plant cells from potato tuber, red kidney bean and banana. Diffusion properties of permeable probes, dextran (20-kDa and 70-kDa) and albumin, were quantified, using fluorescence recovery after photobleaching. The consistent reduction of diffusion rate in the presence of cell walls (around 40%) compared to free-diffusion rate was attributed to the limiting porosity of the wall matrix. A combination of the physical barrier effects demonstrated here and non-catalytic binding of enzymes to cell walls limits the hydrolysis of intracellular macronutrients. This and further understanding of the structural basis for the physical barrier properties would help to design foods from plant materials with enhanced nutrition.


Assuntos
Parede Celular/química , Musa/citologia , Nutrientes/metabolismo , Phaseolus/citologia , Solanum tuberosum/citologia , Parede Celular/metabolismo , Dextranos/química , Dextranos/metabolismo , Difusão , Enzimas/química , Enzimas/metabolismo , Recuperação de Fluorescência Após Fotodegradação/métodos , Hidrólise , Musa/química , Nutrientes/química , Phaseolus/química , Células Vegetais/química , Tubérculos/citologia , Porosidade , Solanum tuberosum/química
19.
J Exp Bot ; 59(6): 1175-86, 2008.
Artigo em Inglês | MEDLINE | ID: mdl-18356146

RESUMO

Rapid wound-healing is crucial in protecting potato tubers from infection and dehydration. Wound-induced suberization and the accumulation of hydrophobic barriers to reduce water vapour conductance/loss are principal protective wound-healing processes. However, little is known about the cognate mechanisms that effect or regulate these processes. The objective of this research was to determine the involvement of abscisic acid (ABA) in the regulation of wound-induced suberization and tuber water vapour loss (dehydration). Analysis by liquid chromatography-mass spectrometry showed that ABA concentrations varied little throughout the tuber, but were slightly higher near the periderm and lowest in the pith. ABA concentrations increase then decrease during tuber storage. Tuber wounding induced changes in ABA content. ABA content in wound-healing tuber discs decreased after wounding, reached a minimum by 24 h, and then increased from the 3rd to the 7th day after wounding. Wound-induced ABA accumulations were reduced by fluridone (FLD); an inhibitor of de novo ABA biosynthesis. Wound-induced phenylalanine ammonia lyase activity was slightly reduced and the accumulation of suberin poly(phenolics) and poly(aliphatics) noticeably reduced in FLD-treated tissues. Addition of ABA to the FLD treatment restored phenylalanine ammonia lyase activity and suberization, unequivocally indicating that endogenous ABA is involved in the regulation of these wound-healing processes. Similar experiments showed that endogenous ABA is involved in the regulation of water vapour loss, a process linked to wax accumulation in wound-healing tubers. Rapid reduction of water vapour loss across the wound surface is essential in preventing desiccation and death of cells at the wound site; live cells are required for suberization. These results unequivocally show that endogenous ABA is involved in the regulation of wound-induced suberization and the processes that protect surface cells from water vapour loss and death by dehydration.


Assuntos
Ácido Abscísico/metabolismo , Reguladores de Crescimento de Plantas/metabolismo , Tubérculos/fisiologia , Solanum tuberosum/fisiologia , Ácido Abscísico/antagonistas & inibidores , Fenilalanina Amônia-Liase/metabolismo , Reguladores de Crescimento de Plantas/antagonistas & inibidores , Proteínas de Plantas/metabolismo , Transpiração Vegetal/efeitos dos fármacos , Tubérculos/citologia , Piridonas/farmacologia
20.
J Integr Plant Biol ; 50(6): 733-41, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18713414

RESUMO

APase activity is involved in regulating many physiological and developmental events by affecting the resorption process. In this study, we investigate the role of APase activity in tuber development in potato. APase activities were mainly localized in cytoplasm, gaps among cells and stroma of amyloplasts of parenchyma cells at the stage of tuber swelling. AP1, encoding a putative APase, was also highly expressed in swelling tubers and a low level of expression was observed in elongated stolons and matured tubers. Inhibition of APase activity by applying Brefeldin A, an inhibitor of APase production and secretion, significantly suppressed the tuber swelling and moderately affected the stolon elongation and the tuberization frequency. During tuber development, sucrose serves as the main soluble sugar for long-distance transportation and resorption. Moreover, inhibition of APase activity by Brefeldin A markedly reduced the sucrose content in tubers and further decreased the starch accumulation, suggesting that the function of APase in regulating the tuber swelling might be at least partially mediated by the sugar resorption. Exogenous sucrose treatments further indicate the important role of sucrose-mediated sugar resorption in tuber swelling. These results suggest that the APase activity might affect the tuber swelling by partially regulating the sucrose-mediated sugar resorption.


Assuntos
Fosfatase Ácida/metabolismo , Metabolismo dos Carboidratos , Tubérculos/enzimologia , Solanum tuberosum/enzimologia , Sacarose/metabolismo , Fosfatase Ácida/antagonistas & inibidores , Fosfatase Ácida/genética , Metabolismo dos Carboidratos/efeitos dos fármacos , Inibidores Enzimáticos/farmacologia , Regulação da Expressão Gênica no Desenvolvimento/efeitos dos fármacos , Regulação Enzimológica da Expressão Gênica/efeitos dos fármacos , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Tubérculos/citologia , Tubérculos/efeitos dos fármacos , Tubérculos/crescimento & desenvolvimento , Solanum tuberosum/citologia , Solanum tuberosum/genética , Solanum tuberosum/crescimento & desenvolvimento , Amido/metabolismo
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