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1.
Int J Mol Sci ; 23(19)2022 Oct 02.
Artigo em Inglês | MEDLINE | ID: mdl-36232994

RESUMO

Yeasts provide attractive host/vector systems for heterologous gene expression. The currently used yeast-based expression platforms include mesophilic and thermotolerant species. A eukaryotic expression system working at low temperatures could be particularly useful for the production of thermolabile proteins and proteins that tend to form insoluble aggregates. For this purpose, an expression system based on an Antarctic psychrotolerant yeast Debaryomyces macquariensis strain D50 that is capable of growing at temperatures ranging from 0 to 30 °C has been developed. The optimal physical culture conditions for D. macquariensis D50 in a fermenter are as follows: temperature 20 °C, pH 5.5, aeration rate of 1.5 vvm, and a stirring speed of 300 rpm. Four integrative plasmid vectors equipped with an expression cassette containing the constitutive GAP promoter and CYC1 transcriptional terminator from D. macquariensis D50 were constructed and used to clone and express a gene-encoding cold-active ß-d-galactosidase of Paracoccus sp. 32d. The yield was 1150 U/L of recombinant yeast culture. Recombinant D. macquariensis D50 strains were mitotically stable under both selective and non-selective conditions. The D. macquariensis D50 host/vector system has been successfully utilized for the synthesis of heterologous thermolabile protein, and it can be an alternative to other microbial expression systems.


Assuntos
Paracoccus , Saccharomycetales , beta-Galactosidase , Fermentação , Galactosidases , Paracoccus/enzimologia , Saccharomycetales/metabolismo , beta-Galactosidase/biossíntese
2.
Proc Natl Acad Sci U S A ; 115(33): 8346-8351, 2018 08 14.
Artigo em Inglês | MEDLINE | ID: mdl-30061400

RESUMO

In this paper, we report an example of the engineered expression of tetrameric ß-galactosidase (ß-gal) containing varying numbers of active monomers. Specifically, by combining wild-type and single-nucleotide polymorphism plasmids at varying ratios, tetrameric ß-gal was expressed in vitro with one to four active monomers. The kinetics of individual enzyme molecules revealed four distinct populations, corresponding to the number of active monomers in the enzyme. Using single-molecule-level enzyme kinetics, we were able to measure an accurate in vitro mistranslation frequency (5.8 × 10-4 per base). In addition, we studied the kinetics of the mistranslated ß-gal at the single-molecule level.


Assuntos
Multimerização Proteica , Subunidades Proteicas/fisiologia , beta-Galactosidase/fisiologia , Cinética , Plasmídeos , Polimorfismo de Nucleotídeo Único , Biossíntese de Proteínas , beta-Galactosidase/biossíntese , beta-Galactosidase/química , beta-Galactosidase/genética
3.
Metab Eng ; 57: 43-50, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31562926

RESUMO

Acid whey, a byproduct in cheese and yogurt production, demands high costs in disposal at large quantities. Nonetheless, it contains abundant sugars and nutrients that can potentially be utilized by microorganisms. Here we report a novel platform technology that converts acid whey into value-added products using Yarrowia lipolytica. Since wild type strains do not assimilate lactose, a major carbon source in whey, a secreted ß-galactosidase was introduced. Additionally, to accelerate galactose metabolism, we overexpressed the relevant native four genes of the Leloir pathway. The engineered strain could achieve rapid total conversion of all carbon sources in acid whey, producing 6.61 g/L of fatty acids (FAs) with a yield of 0.146 g-FAs/g-substrates. Further engineering to introduce an omega-3 desaturase enabled the synthesis of α-linolenic acid from acid whey, producing 10.5 mg/gDCW within a short fermentation time. Finally, PEX10 knockout in our platform strain was shown to minimize hyphal formation in concentrated acid whey cultures, greatly improving fatty acid content. These results demonstrate the feasibility of using acid whey as a previously untapped resource for biotechnology.


Assuntos
Ácidos Graxos/biossíntese , Engenharia Metabólica , Microrganismos Geneticamente Modificados , Soro do Leite/metabolismo , Yarrowia , Ácidos Graxos/genética , Microrganismos Geneticamente Modificados/genética , Microrganismos Geneticamente Modificados/crescimento & desenvolvimento , Yarrowia/genética , Yarrowia/crescimento & desenvolvimento , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
4.
Microb Cell Fact ; 19(1): 126, 2020 Jun 08.
Artigo em Inglês | MEDLINE | ID: mdl-32513169

RESUMO

BACKGROUND: Thermostable enzymes are commonly produced in mesophilic hosts for research and bioengineering purposes. However, these hosts do not overexpress the active forms of some biologically functional thermoenzymes. Therefore, an efficient thermophilic expression system is needed. Thermus thermophilus contains an easily manipulable genome and is therefore among the best candidate microbes for a "hot" expression system. We previously identified a strong and inducible promoter that was active in T. thermophilus under supersaturated silica conditions. Here, we report a new heterologous gene expression system based on a silica-inducible promoter in T. thermophilus. RESULTS: A Thermus sp. A4 gene encoding thermostable ß-galactosidase was cloned as a reporter gene into the expression vector pSix1, which contains a selection marker that confers thermostable resistance to hygromycin and a 600 bp DNA region containing a putative silica-inducible promoter. ß-galactosidase activity was 11-fold higher in the presence than in the absence of 10 mM silicic acid. SDS-PAGE revealed a prominent band corresponding to 73 kDa of ß-galactosidase, and this enzyme was expressed as an active and soluble protein (yield: 27 mg/L) in Thermus but as an inclusion body in Escherichia coli. Truncation of the putative silica-inducible promoter region in Thermus expression vector improved the yield of the target protein, possibly by avoiding plasmid instability due to homologous recombination. Finally, we developed an expression vector containing the pSix1 backbone and a 100 bp DNA region corresponding to the silica-inducible promoter. We used this vector to successfully express the active form of glutamate dehydrogenase from Pyrobaculum islandicum (PisGDH) without additional treatment (yield: 9.5 mg/L), whereas the expression of active PisGDH in E. coli required heat treatment. CONCLUSION: We successfully expressed the thermostable ß-galactosidase and PisGDH in T. thermophilus as active and soluble forms and achieved with our system the highest known protein expression levels in this species. These thermoenzymes were expressed in active and soluble forms. Our results validate the use of our silica-inducible expression system as a novel strategy for the intracellular overexpression of thermostable proteins.


Assuntos
Proteínas de Bactérias/biossíntese , Vetores Genéticos , Regiões Promotoras Genéticas , Thermus thermophilus/genética , Clonagem Molecular , Expressão Gênica , Regulação Bacteriana da Expressão Gênica , Glutamato Desidrogenase/biossíntese , beta-Galactosidase/biossíntese
5.
Metab Eng ; 52: 87-97, 2019 03.
Artigo em Inglês | MEDLINE | ID: mdl-30453038

RESUMO

The biosynthesis of surfactin has attracted broad interest; however, there is a bottleneck in its low yield in wild strains and the ability to engineer Bacillus producers. Because the key metabolic mechanisms in the surfactin synthesis pathway remain unclear, genetic engineering approaches are all ending up with a single or a few gene modifications. The aim of this study is to develop a systematic engineering approach to improve the biosynthesis of surfactin. First, we restored surfactin biosynthetic activity by integrating a complete sfp gene into the nonproducing Bacillus subtilis 168 strain and obtained a surfactin titer of 0.4 g/l. Second, we reduced competition by deleting biofilm formation-related genes and nonribosomal peptide synthetases/polyketide synthase pathways (3.8% of the total genome), which increased the surfactin titer by 3.3-fold. Third, we improved cellular tolerance to surfactin by overexpressing potential self-resistance-associated proteins, which further increased the surfactin titer by 8.5-fold. Fourth, we increased the supply of precursor branched-chain fatty acids by engineering the branched-chain fatty acid biosynthesis pathway, resulting in an increase of the surfactin titer to 8.5 g/l (a 20.3-fold increase). Finally, due to the preference of the glycolytic pathway for cell growth, we diverted precursor acetyl-CoA away from cell growth to surfactin biosynthesis by enhancing the transcription of srfA. The final surfactin titer increased to 12.8 g/l, with a yield of 65.0 mmol/mol sucrose (42% of the theoretical yield) in the metabolically engineered strain. To the best of our knowledge, this is the highest titer and yield that has been reported. This study may pave the way for the commercial production of green surfactin. More broadly, our work presents another successful example of the modularization of metabolic pathways for improving titer and yield in biotechnological production.


Assuntos
Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Engenharia Metabólica/métodos , Biofilmes , Endopeptidases/genética , Ácidos Graxos/farmacologia , Técnicas de Inativação de Genes , Cetoácidos/metabolismo , Redes e Vias Metabólicas/genética , Peptídeos Cíclicos/biossíntese , Plasmídeos/genética , RNA Bacteriano/genética , beta-Galactosidase/biossíntese
6.
Biotechnol Bioeng ; 115(3): 557-564, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29131302

RESUMO

We report a spore-based biocatalysis platform capable of producing and self-assembling active multimeric enzymes on a spore surface with a high loading density. This was achieved by co-expressing both a spore surface-anchoring scaffoldin protein containing multiple cohesin domains and a dockerin-tagged enzyme of interest in the mother cell compartment during Bacillus subtilis sporulation. Using this method, tetrameric ß-galactosidase was successfully displayed on the spore surface with a loading density of 1.4 × 104 active enzymes per spore particle. The resulting spore biocatalysts exhibited high conversion rates of transgalactosylation in water/organic emulsions. With easy manufacture, enhanced thermostability, excellent reusability, and long-term storage stability at ambient temperature, this approach holds a great potential in a wide range of biocatalysis applications especially involving organic phases.


Assuntos
Bacillus subtilis/enzimologia , Proteínas de Bactérias , Regulação Bacteriana da Expressão Gênica , Regulação Enzimológica da Expressão Gênica , Multimerização Proteica , Esporos Bacterianos/enzimologia , beta-Galactosidase , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/química , Biocatálise , beta-Galactosidase/biossíntese , beta-Galactosidase/química
7.
Protein Expr Purif ; 151: 72-77, 2018 11.
Artigo em Inglês | MEDLINE | ID: mdl-29894806

RESUMO

Bacillus subtilis is widely used for the large-scale industrial production of proteins. In this study, the transcriptomes of B. subtilis 168 and B. megaterium DSM319 cells grown in stationary phase were analyzed to expand the repertoire of highly-active promoters for high-level protein expression based on the transcriptomes of these Bacillus strains. 24 genes with the highest expression levels among 2048 highly expressed gene families were chosen to examine promoter activity. The activities of four promoters with the beta-galactosidase (bgaB) gene as a reporter were stronger than those of the well-characterized strong promoter P43. The expression level of recombinant Pro-transglutaminase (pro-MTG) from Streptomyces mobaraensis achieved 87.6 U/mL and 70.7 U/mL under the control of two constitutive promoter PsodA and PydzA, respectively, compared to the promoter P43. Our study provides a basis for further studies on the Bacillus transcriptome by identifying strong promoters for industrial uses.


Assuntos
Bacillus megaterium/genética , Bacillus subtilis/genética , Transcriptoma/genética , Bacillus megaterium/metabolismo , Bacillus subtilis/metabolismo , Espaço Extracelular/metabolismo , Genes Reporter , Regiões Promotoras Genéticas , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/genética , Streptomyces/genética , Streptomyces/metabolismo , Transglutaminases/biossíntese , Transglutaminases/genética , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
8.
Appl Microbiol Biotechnol ; 102(1): 17-37, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29032473

RESUMO

Oligosaccharides are polymers with two to ten monosaccharide residues which have sweetener functions and sensory characteristics, in addition to exerting physiological effects on human health. The ones called nondigestible exhibit a prebiotic behavior being fermented by colonic microflora or stimulating the growth of beneficial bacteria, playing roles in the immune system, protecting against cancer, and preventing cardiovascular and metabolic issues. The global prebiotics market is expected to grow around 12.7% in the next 8 years, so manufacturers are developing new alternatives to obtain sustainable and efficient processes for application on a large scale. Most studied examples of biotechnological processes involve the development of new strategies for fructooligosaccharide, galactooligosaccharide, xylooligosaccharide, and mannanooligosaccharide synthesis. Among these, the use of whole cells in fermentation, synthesis of microbial enzymes (ß-fructofuranosidases, ß-galactosidases, xylanases, and ß-mannanases), and enzymatic process development (permeabilization, immobilization, gene expression) can be highlighted, especially if the production costs are reduced by the use of agro-industrial residues or by-products such as molasses, milk whey, cotton stalks, corncobs, wheat straw, poplar wood, sugarcane bagasse, and copra meal. This review comprises recent studies to demonstrate the potential for biotechnological production of oligosaccharides, and also aspects that need more investigation for future applications in a large scale.


Assuntos
Biotecnologia/métodos , Indústria Alimentícia , Oligossacarídeos/genética , Oligossacarídeos/metabolismo , Prebióticos , Biotecnologia/economia , Colo/microbiologia , Laticínios , Fermentação , Glucuronatos/biossíntese , Glucuronatos/metabolismo , Humanos , Oligossacarídeos/biossíntese , Oligossacarídeos/economia , Polissacarídeos/metabolismo , beta-Galactosidase/biossíntese , beta-Galactosidase/metabolismo , beta-Manosidase/biossíntese , beta-Manosidase/metabolismo
9.
J Basic Microbiol ; 58(6): 475-491, 2018 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-29660847

RESUMO

As of date the two temperature sensitive mutations isolated in pheST operon include pheS5 (G293 →A293 ) and pheT354. Recently, we reported that G673 of pheS defines a hot spot for intragenic suppressors of pheS5. In this investigation, in 13 independent experiments, a collection of temperature sensitive mutants were isolated by localized mutagenesis. Complementation using clones bearing pheS+ , pheT+ , and pheS+ T+ indicated that 34 mutants could harbor lesion(s) in pheS and four could be in pheT and one mutant might be a double mutant. Surprisingly, all the 34 pheS mutants harbored the very same (G293 →A293 ) transition mutation as present in the classical pheS5 mutant. Most unexpectedly, the four pheT mutants isolated harbored the same G1711 →A1711 transition, a mutation which is hitherto unreported. Since all the four pheT mutants were defined by the same G1711 →A1711 base change, we believe that getting other mutations could be hard hitting and therefore it is proposed that G1711 itself could be a "hot spot" for emergence of Ts mutations in pheT and similarly G293 itself could be a "hot spot" for Ts lesions in pheS. These results clearly imply a vital role for Glutamic acid571 (Glu571 ) of PheT and reinforce criticality of Glycine98 (Gly98 ) of PheS in the thermal stability of PheRS enzyme.


Assuntos
Sequência de Bases/fisiologia , Estabilidade Enzimática/genética , Estabilidade Enzimática/fisiologia , Escherichia coli K12/enzimologia , Escherichia coli K12/genética , Mutagênese , Mapeamento Cromossômico , DNA Bacteriano/análise , Escherichia coli K12/fisiologia , Genes Bacterianos/genética , Teste de Complementação Genética , Proteínas Mutantes/genética , Proteínas Mutantes/metabolismo , Óperon , Fenótipo , Mutação Puntual , Análise de Sequência , Temperatura , Transdução Genética , beta-Galactosidase/biossíntese
10.
Biophys J ; 112(9): 1984-1996, 2017 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-28494968

RESUMO

The Escherichia coli lac operon is regulated by a positive feedback loop whose potential to generate an all-or-none response in single cells has been a paradigm for bistable gene expression. However, so far bistable lac induction has only been observed using gratuitous inducers, raising the question about the biological relevance of bistable lac induction in the natural setting with lactose as the inducer. In fact, the existing experimental evidence points to a graded rather than an all-or-none response in the natural lactose uptake system. In contrast, predictions based on computational models of the lactose uptake pathway remain controversial. Although some argue in favor of bistability, others argue against it. Here, we reinvestigate lac operon expression in single cells using a combined experimental/modeling approach. To this end, we parameterize a well-supported mathematical model using transient measurements of LacZ activity upon induction with different amounts of lactose. The resulting model predicts a monostable induction curve for the wild-type system, but indicates that overexpression of the LacI repressor would drive the system into the bistable regime. Both predictions were confirmed experimentally supporting the view that the wild-type lac induction circuit generates a graded response rather than bistability. More interestingly, we find that the lac induction curve exhibits a pronounced maximum at intermediate lactose concentrations. Supported by our data, a model-based analysis suggests that the nonmonotonic response results from saturation of the LacI repressor at low inducer concentrations and dilution of Lac enzymes due to an increased growth rate beyond the saturation point. We speculate that the observed maximum in the lac expression level helps to save cellular resources by limiting Lac enzyme expression at high inducer concentrations.


Assuntos
Proteínas de Escherichia coli/metabolismo , Escherichia coli/genética , Óperon Lac , Lactose/metabolismo , Modelos Biológicos , Meios de Cultura , Indução Enzimática , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Galactose/metabolismo , Regulação Bacteriana da Expressão Gênica , Glucose/metabolismo , Microscopia de Fluorescência , Ácido Succínico/metabolismo , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
11.
Hum Mol Genet ; 24(15): 4353-64, 2015 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-25964428

RESUMO

GM1 gangliosidosis (GM1) is an autosomal recessive lysosomal storage disease where GLB1 gene mutations result in a reduction or absence of lysosomal acid ß-galactosidase (ßgal) activity. ßgal deficiency leads to accumulation of GM1-ganglioside in the central nervous system (CNS). GM1 is characterized by progressive neurological decline resulting in generalized paralysis, extreme emaciation and death. In this study, we assessed the therapeutic efficacy of an adeno-associated virus (AAV) 9-mßgal vector infused systemically in adult GM1 mice (ßGal(-/-)) at 1 × 10(11) or 3 × 10(11) vector genomes (vg). Biochemical analysis of AAV9-treated GM1 mice showed high ßGal activity in liver and serum. Moderate ßGal levels throughout CNS resulted in a 36-76% reduction in GM1-ganglioside content in the brain and 75-86% in the spinal cord. Histological analyses of the CNS of animals treated with 3 × 10(11) vg dose revealed increased presence of ßgal and clearance of lysosomal storage throughout cortex, hippocampus, brainstem and spinal cord. Storage reduction in these regions was accompanied by a marked decrease in astrogliosis. AAV9 treatment resulted in improved performance in multiple tests of motor function and behavior. Also the majority of GM1 mice in the 3 × 10(11) vg cohort retained ambulation and rearing despite reaching the humane endpoint due to weight loss. Importantly, the median survival of AAV9 treatment groups (316-576 days) was significantly increased over controls (250-264 days). This study shows that moderate widespread expression of ßgal in the CNS of GM1 gangliosidosis mice is sufficient to achieve significant biochemical impact with phenotypic amelioration and extension in lifespan.


Assuntos
Sistema Nervoso Central/metabolismo , Gangliosidose GM1/genética , Terapia Genética , beta-Galactosidase/genética , Animais , Astrócitos/metabolismo , Astrócitos/patologia , Tronco Encefálico/metabolismo , Tronco Encefálico/patologia , Sistema Nervoso Central/patologia , Dependovirus/genética , Modelos Animais de Doenças , Gangliosídeos/metabolismo , Gangliosidose GM1/metabolismo , Gangliosidose GM1/terapia , Vetores Genéticos , Humanos , Camundongos , Medula Espinal/metabolismo , Medula Espinal/patologia , beta-Galactosidase/biossíntese , beta-Galactosidase/sangue
12.
Anal Biochem ; 516: 65-74, 2017 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-27771392

RESUMO

High throughput methods for recombinant protein production using E. coli typically involve the use of affinity tags for simple purification of the protein of interest. One drawback of these techniques is the occasional need for tag removal before study, which can be hard to predict. In this work, we demonstrate two high throughput purification methods for untagged protein targets based on simple and cost-effective self-cleaving intein tags. Two model proteins, E. coli beta-galactosidase (ßGal) and superfolder green fluorescent protein (sfGFP), were purified using self-cleaving versions of the conventional chitin-binding domain (CBD) affinity tag and the nonchromatographic elastin-like-polypeptide (ELP) precipitation tag in a 96-well filter plate format. Initial tests with shake flask cultures confirmed that the intein purification scheme could be scaled down, with >90% pure product generated in a single step using both methods. The scheme was then validated in a high throughput expression platform using 24-well plate cultures followed by purification in 96-well plates. For both tags and with both target proteins, the purified product was consistently obtained in a single-step, with low well-to-well and plate-to-plate variability. This simple method thus allows the reproducible production of highly pure untagged recombinant proteins in a convenient microtiter plate format.


Assuntos
Proteínas de Escherichia coli/isolamento & purificação , Escherichia coli , Proteínas de Fluorescência Verde/isolamento & purificação , Inteínas , Proteínas Recombinantes de Fusão/isolamento & purificação , beta-Galactosidase/isolamento & purificação , Proteínas de Escherichia coli/biossíntese , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Fluorescência Verde/biossíntese , Proteínas de Fluorescência Verde/química , Proteínas de Fluorescência Verde/genética , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
13.
Exp Dermatol ; 25(2): 113-9, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26441147

RESUMO

Dermal fibroblasts play a key role in maintaining skin homoeostasis by synthesizing and degrading extracellular matrix components. During ageing, they are subjected to changes, such as the loss of type I collagen expression and an increased synthesis of metalloproteinase I, leading to fragmentation of collagen fibrils with consequent reduction of the mechanical tension and defects of skin wound healing. Most information about fibroblast ageing was obtained from experiments performed on replicative-senescent dermal fibroblasts in vitro. However, the senescence status of fibroblasts isolated from intrinsically aged skins and its consequences on functionality need to be deeper investigated. Herein, we studied age-related phenotypic and functional alteration of fibroblasts from 'young' (<35 years) and 'old' (>50 years) donors. Our results brought evidence of the senescent status of 'old' fibroblasts by senescence associated ß-galactosidase (SA-ßgal) positive staining and p16 expression. A PCR array focusing on senescence highlighted a subset of downregulated genes including cell cycle progression and ECM genes in 'old' fibroblasts as well as a subset of upregulated genes involved in senescence features. In 'old' fibroblasts, we measured a downregulation of proliferative and contractile capacities of migratory potential under PDGF stimulation and activation into myofibroblasts under TGFß. Old fibroblasts were also more sensitive to oxidative stress than 'young' ones. Of interest, downregulation of p16 expression partially reversed the senescent phenotype of 'old' fibroblasts but failed to restore their functional properties. In conclusion, our data brought evidence of phenotypic and functional differences between fibroblasts from young and intrinsically aged skin that may contribute to the alterations observed with ageing.


Assuntos
Derme/citologia , Fibroblastos/citologia , Envelhecimento da Pele , Adulto , Ciclo Celular , Divisão Celular , Células Cultivadas , Senescência Celular , Colágeno/biossíntese , Colágeno/genética , Inibidor p16 de Quinase Dependente de Ciclina , Fibroblastos/efeitos dos fármacos , Fibroblastos/metabolismo , Regulação da Expressão Gênica no Desenvolvimento , Genes p16 , Humanos , Pessoa de Meia-Idade , Miofibroblastos/citologia , Proteínas de Neoplasias/biossíntese , Fenótipo , Interferência de RNA , RNA Mensageiro/biossíntese , RNA Mensageiro/genética , RNA Interferente Pequeno/genética , Fator de Crescimento Transformador beta/farmacologia , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
14.
Nucleic Acids Res ; 42(9): 5823-9, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24711367

RESUMO

Transcriptional slippage is a class of error in which ribonucleic acid (RNA) polymerase incorporates nucleotides out of register, with respect to the deoxyribonucleic acid (DNA) template. This phenomenon is involved in gene regulation mechanisms and in the development of diverse diseases. The bacteriophage λ N protein reduces transcriptional slippage within actively growing cells and in vitro. N appears to stabilize the RNA/DNA hybrid, particularly at the 5' end, preventing loss of register between transcript and template. This report provides the first evidence of a protein that directly influences transcriptional slippage, and provides a clue about the molecular mechanism of transcription termination and N-mediated antitermination.


Assuntos
Bacteriófago lambda , RNA Polimerases Dirigidas por DNA/química , Proteínas de Escherichia coli/química , Escherichia coli/enzimologia , Proteínas Virais Reguladoras e Acessórias/química , Sequência de Bases , Escherichia coli/virologia , Genes Reporter , Transcrição Gênica , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
15.
Nucleic Acids Res ; 42(9): 5495-504, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24598256

RESUMO

The Escherichia coli lactose operon provides a paradigm for understanding gene control by DNA looping where the lac repressor (LacI) protein competes with RNA polymerase for DNA binding. Not all promoter loops involve direct competition between repressor and RNA polymerase. This raises the possibility that positioning a promoter within a tightly constrained DNA loop is repressive per se, an idea that has previously only been considered in vitro. Here, we engineer living E. coli bacteria to measure repression due to promoter positioning within such a tightly constrained DNA loop in the absence of protein-protein binding competition. We show that promoters held within such DNA loops are repressed ∼100-fold, with up to an additional ∼10-fold repression (∼1000-fold total) dependent on topological positioning of the promoter on the inner or outer face of the DNA loop. Chromatin immunoprecipitation data suggest that repression involves inhibition of both RNA polymerase initiation and elongation. These in vivo results show that gene repression can result from tightly looping promoter DNA even in the absence of direct competition between repressor and RNA polymerase binding.


Assuntos
Escherichia coli/genética , Regulação Bacteriana da Expressão Gênica , Óperon Lac , Regiões Promotoras Genéticas , Ligação Competitiva , DNA Bacteriano/genética , RNA Polimerases Dirigidas por DNA/metabolismo , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Inativação Gênica , Genes Reporter , Repressores Lac/genética , Repressores Lac/metabolismo , Modelos Genéticos , Modelos Moleculares , Conformação de Ácido Nucleico , Ligação Proteica , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
16.
Food Microbiol ; 60: 29-38, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27554143

RESUMO

This study aimed to select autochthonous lactic acid bacteria (LAB) with probiotic and functional properties from goat dairies and test their addition to artisanal cheese for the inhibition of Salmonella typhi. In vitro tests, including survival in the gastrointestinal tract (GIT), auto- and co-aggregation, the hemolytic test, DNase activity, antimicrobial susceptibility, antibacterial activity, tolerance to NaCl and exopolysaccharide (EPS), gas and diacetyl production were conducted for sixty isolates. Based on these tests, four LAB isolates (UNIVASF CAP 16, 45, 84 and 279) were selected and identified. Additional tests, such as production of lactic and citric acids by UNIVASF CAP isolates were performed in addition to assays of bile salt hydrolase (BSH), ß-galactosidase and decarboxylase activity. The four selected LAB produced high lactic acid (>17 g/L) and low citric acid (0.2 g/L) concentrations. All selected strains showed BSH and ß-galactosidase activity and none showed decarboxylase activity. Three goat cheeses (1, 2 and control) were produced and evaluated for the inhibitory action of selected LAB against Salmonella typhi. The cheese inoculated with LAB (cheese 2) decreased 0.38 log10 CFU/g of S. Typhy population while in the cheese without LAB inoculation (cheese 1) the pathogen population increased by 0.29 log units. Further, the pH value increased linearly over time, by 0.004 units per day in cheese 1. In the cheese 2, the pH value decreased linearly over time, by 0.066 units per day. The cocktail containing selected Lactobacillus strains with potential probiotic and technological properties showed antibacterial activity against S. typhi in vitro and in artisanal goat cheese. Thus, goat milk is important source of potential probiotic LAB which may be used to inhibit the growth of Salmonella population in cheese goat, contributing to safety and functional value of the product.


Assuntos
Antibiose , Queijo/microbiologia , Lacticaseibacillus paracasei/fisiologia , Levilactobacillus brevis/fisiologia , Leite/microbiologia , Salmonella typhi/fisiologia , Amidoidrolases/biossíntese , Animais , Ácido Cítrico/metabolismo , Indústria de Laticínios , Microbiologia de Alimentos , Inocuidade dos Alimentos , Cabras , Concentração de Íons de Hidrogênio , Ácido Láctico/biossíntese , Lactobacillaceae/classificação , Lactobacillaceae/efeitos dos fármacos , Lactobacillaceae/isolamento & purificação , Lactobacillaceae/fisiologia , Levilactobacillus brevis/isolamento & purificação , Lacticaseibacillus paracasei/isolamento & purificação , Probióticos/isolamento & purificação , Probióticos/metabolismo , beta-Galactosidase/biossíntese
17.
Bull Exp Biol Med ; 161(5): 736-740, 2016 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27704345

RESUMO

Transcription activity of NF-κB in sensory neurons was analyzed in vitro using classical immunocytochemical methods and transgenic technologies. Activation of NF-κB in NIH3T3 cells and in murine sensory neurons after in vitro stimulation with TNF-α was demonstrated by the immunocytochemical method; however, the expression of the reporter NF-κB/LacZ transgene was detected only after addition of histon deacetylase inhibitor. Hence, formally contradictory conclusions from the results of immunocytochemical analysis and reporter transgene expression were in line with the hypothesis on epigenetic repression of NF-κB activity in sensory neurons mediated by histon deacetylases.


Assuntos
Células Receptoras Sensoriais/metabolismo , Fator de Transcrição RelA/metabolismo , Ativação Transcricional , Animais , Núcleo Celular/metabolismo , Gânglios Espinais/citologia , Genes Reporter , Camundongos , Camundongos Transgênicos , Células NIH 3T3 , Transcrição Gênica , Fator de Necrose Tumoral alfa/fisiologia , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
18.
Carcinogenesis ; 36(10): 1169-79, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26168818

RESUMO

Berberine (BBR) is a natural isoquinoline alkaloid with proven antiangiogenic and anticancer activities. We recently demonstrated that BBR and its synthetic derivative 13-(4-chlorophenylethyl)berberine iodide, NAX014, exert antiproliferative activity against HER2-overexpressing breast cancer cells, inducing apoptosis, modulating the expression of cell cycle checkpoint molecules involved in cell senescence, and reducing both HER2 expression and phosphorylation on tumor cells. In this study, we examined the anticancer properties of BBR and NAX014 in a transgenic mouse model which spontaneously develops HER2-positive mammary tumors. Repeated intraperitoneal injections of a safety dose (2.5mg/kg) of NAX014 delayed the development of tumors, reducing both the number and size of tumor masses. In vivo sidestream dark field videomicroscopy revealed a significant lower vessel density in mammary tumors from NAX014-treated mice in comparison with the control group. Immunohistochemical evaluation using CD34 antibody confirmed the reduced vessel density in NAX014 group. Statistically significant increase of senescence associated ß-galactosidase and p16 expression, and reduced expression of heparanase were observed in tumors from NAX014-treated mice than in tumors from control animals. Finally, NAX014 treatment decreased the level of perforine and granzyme mRNA in mammary tumors. Berberine did not show any statistically significant modulation in comparison with control mice. The results of the present study indicate that NAX014 is more effective than BBR in exerting anticancer activity delaying the development of mammary tumors in mice transgenic for the HER-2/neu oncogene. The antitumor efficacy of NAX014 is mainly related to its effect on tumor vascular network and on induction of tumor cell senescence.


Assuntos
Alcaloides de Berberina/administração & dosagem , Berberina/administração & dosagem , Neoplasias da Mama/tratamento farmacológico , Neoplasias Mamárias Animais/tratamento farmacológico , Neovascularização Patológica/tratamento farmacológico , Inibidores da Angiogênese/administração & dosagem , Animais , Apoptose/efeitos dos fármacos , Berberina/análogos & derivados , Neoplasias da Mama/genética , Neoplasias da Mama/patologia , Proliferação de Células/efeitos dos fármacos , Inibidor p16 de Quinase Dependente de Ciclina , Modelos Animais de Doenças , Feminino , Regulação Neoplásica da Expressão Gênica/efeitos dos fármacos , Humanos , Neoplasias Mamárias Animais/genética , Neoplasias Mamárias Animais/patologia , Camundongos , Camundongos Transgênicos , Proteínas de Neoplasias/biossíntese , Neovascularização Patológica/genética , Neovascularização Patológica/patologia , Receptor ErbB-2/genética , beta-Galactosidase/biossíntese
19.
Biochim Biophys Acta ; 1840(7): 2171-83, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24667034

RESUMO

BACKGROUND: During evolution, organisms with renewable tissues have developed mechanisms to prevent tumorigenesis, including cellular senescence and apoptosis. Cellular senescence is characterized by a permanent cell cycle arrest triggered by both endogenous stress and exogenous stress. The p19INK4d, a member of the family of cyclin-dependent kinase inhibitors (INK4), plays an important role on cell cycle regulation and in the cellular DNA damage response. We hypothesize that p19INK4d is a potential factor involved in the onset and/or maintenance of the senescent state. METHODS: Senescence was confirmed by measuring the cell cycle arrest and the senescence-associated ß-galactosidase activity. Changes in p19INK4d expression and localization during senescence were determined by Western blot and immunofluorescence assays. Chromatin condensation was measured by microccocal nuclease digestion and histone salt extraction. RESULTS: The data presented here show for the first time that p19INK4d expression is up-regulated by different types of senescence. Changes in senescence-associated hallmarks were driven by modulation of p19 expression indicating a direct link between p19INK4d induction and the establishment of cellular senescence. Following a senescence stimulus, p19INK4d translocates to the nucleus and tightly associates with chromatin. Moreover, reduced levels of p19INK4d impair senescence-related global genomic heterochromatinization. Analysis of p19INK4d mRNA and protein levels in tissues from differently aged mice revealed an up-regulation of p19INK4d that correlates with age. CONCLUSION: We propose that p19INK4d participates in the cellular mechanisms that trigger senescence by contributing to chromatin compaction. GENERAL SIGNIFICANCE: This study provides novel insights into the dynamics process of cellular senescence, a central tumor suppressive mechanism.


Assuntos
Envelhecimento/genética , Senescência Celular/genética , Inibidor de Quinase Dependente de Ciclina p19/genética , Heterocromatina/genética , Animais , Carcinogênese , Pontos de Checagem do Ciclo Celular/genética , Inibidor de Quinase Dependente de Ciclina p19/metabolismo , Dano ao DNA/genética , Regulação da Expressão Gênica , Camundongos , beta-Galactosidase/biossíntese
20.
Hum Mol Genet ; 22(7): 1300-15, 2013 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-23257288

RESUMO

Adult neurogenesis, the generation of new neurons during the adulthood, is a process controlled by several kinases and phosphatases among which GSK3ß exerts important functions. This protein is particularly abundant in the central nervous system, and its activity deregulation is believed to play a key role in chronic disorders such as Alzheimer's disease. Previously, we reported that in vivo overexpression of GSK3ß (Tet/GSK3ß mice) causes alterations in adult neurogenesis, leading to a depletion of the neurogenic niches. Here, we have further characterized those alterations, finding a delay in the switching-off of doublecortin marker as well as changes in the survival and death rates of immature precursors and a decrease in the total number of mature neurons. Besides, we have highlighted the importance of the inflammatory environment, identifying eotaxin as a possible modulator of the detrimental effects on adult neurogenesis. Taking advantage of the conditional system, we have also explored whether these negative consequences of increasing GSK3 activity are susceptible to revert after doxycycline treatment. We show that transgene shutdown in symptomatic mice reverts microgliosis, abnormal eotaxin levels as well as the aforementioned alterations concerning immature neurons. Unexpectedly, the decrease in the number of mature neurons and neuronal precursor cells of the subgranular zone of Tet/GSK3ß mice could not be reverted. Thus, alterations in adult neurogenesis and likely in neurodegenerative disorders can be restored in part, although neurogenic niche depletion represents a non-reversible damage persisting during lifetime with a remarkable impact in adult mature neurons.


Assuntos
Quinase 3 da Glicogênio Sintase/metabolismo , Neurogênese , Animais , Biomarcadores/metabolismo , Sobrevivência Celular , Quimiocina CCL11/metabolismo , Proteínas de Ligação a DNA , Giro Denteado/citologia , Giro Denteado/enzimologia , Proteínas do Domínio Duplacortina , Indução Enzimática , Genes Reporter , Proteína Glial Fibrilar Ácida/metabolismo , Quinase 3 da Glicogênio Sintase/genética , Glicogênio Sintase Quinase 3 beta , Proteínas de Filamentos Intermediários/metabolismo , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Transgênicos , Proteínas Associadas aos Microtúbulos/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Nestina , Células-Tronco Neurais/fisiologia , Neurônios/enzimologia , Neuropeptídeos/metabolismo , Proteínas Nucleares/metabolismo , Nicho de Células-Tronco , beta-Galactosidase/biossíntese , beta-Galactosidase/genética
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