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Analysis of genome comparison of two Indian isolates of Cowpea aphid-borne mosaic virus from India.
Mishra, Ritesh; Verma, Rakesh Kumar; Gaur, Rajarshi Kumar.
Affiliation
  • Mishra R; Department of Science, College of Arts, Science and Humanities, Mody University of Science and Technology, Lakshmangarh, Sikar, 332311, Rajasthan, India.
  • Verma RK; Department of Science, College of Arts, Science and Humanities, Mody University of Science and Technology, Lakshmangarh, Sikar, 332311, Rajasthan, India.
  • Gaur RK; Department of Science, College of Arts, Science and Humanities, Mody University of Science and Technology, Lakshmangarh, Sikar, 332311, Rajasthan, India. gaurrajarshi@hotmail.com.
Virus Genes ; 51(2): 306-9, 2015 Oct.
Article in En | MEDLINE | ID: mdl-26184969
ABSTRACT
The complete sequence of two Cowpea aphid-borne mosaic virus (CABMV) isolates (RR3 and RR4) from India was determined. Phylogenetic analysis showed that both isolates showed different closeness with other isolates of CABMV. CABMV-RR3 showed maximum identity of 99 % with CABMV-BR1 from Brazil at nucleotide and protein levels, whereas CABMV-RR4 showed identity of 73 and 95 % with CABMV-Z isolate from Zimbabwe at nucleotide and protein levels respectively. Similarity identity matrix revealed 69 % identity at nucleotide level and 91 % at protein level with each other. Recombination breakpoint detection showed that CABMV-MG-Avr from Brazil and CABMV-Z from Zimbabwe act as major parents in our isolates RR3 and RR4, respectively.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Aphids / RNA, Viral / Genome, Viral / Sequence Analysis, DNA / Mosaic Viruses Limits: Animals Country/Region as subject: Asia Language: En Journal: Virus Genes Journal subject: BIOLOGIA MOLECULAR / VIROLOGIA Year: 2015 Type: Article Affiliation country: India
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Aphids / RNA, Viral / Genome, Viral / Sequence Analysis, DNA / Mosaic Viruses Limits: Animals Country/Region as subject: Asia Language: En Journal: Virus Genes Journal subject: BIOLOGIA MOLECULAR / VIROLOGIA Year: 2015 Type: Article Affiliation country: India