NGSPanPipe: A Pipeline for Pan-genome Identification in Microbial Strains from Experimental Reads.

Kulsum, Umay; Kapil, Arti; Singh, Harpreet; Kaur, Punit

Kulsum, Umay; Kapil, Arti; Singh, Harpreet; Kaur, Punit.

Affiliation

Kulsum U; Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India.
Kapil A; Department of Microbiology, All India Institute of Medical Sciences, New Delhi, India.
Singh H; Indian Council of Medical Research, New Delhi, 110029, India.
Kaur P; Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India. kaurpunit@gmail.com.

Adv Exp Med Biol ; 1052: 39-49, 2018.

Article in En | MEDLINE | ID: mdl-29785479

Subject(s)

Bacteria/genetics; Genome, Bacterial; Bacteria/classification; Bacteria/isolation & purification; Databases, Genetic; High-Throughput Nucleotide Sequencing

Key words

Accessory genome; Bacterial species; Core genome; Next-generation sequencing; Pan-genome; Short reads

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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Bacteria / Genome, Bacterial Type of study: Diagnostic_studies Language: En Journal: Adv Exp Med Biol Year: 2018 Type: Article Affiliation country: India

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