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An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.
Grubaugh, Nathan D; Gangavarapu, Karthik; Quick, Joshua; Matteson, Nathaniel L; De Jesus, Jaqueline Goes; Main, Bradley J; Tan, Amanda L; Paul, Lauren M; Brackney, Doug E; Grewal, Saran; Gurfield, Nikos; Van Rompay, Koen K A; Isern, Sharon; Michael, Scott F; Coffey, Lark L; Loman, Nicholas J; Andersen, Kristian G.
Affiliation
  • Grubaugh ND; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, 92037, USA. nathan.grubaugh@yale.edu.
  • Gangavarapu K; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA. nathan.grubaugh@yale.edu.
  • Quick J; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, 92037, USA. gkarthik@scripps.edu.
  • Matteson NL; Institute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.
  • De Jesus JG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
  • Main BJ; Institute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.
  • Tan AL; Laboratory of Experimental Pathology, Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Salvador, Bahia, Brazil.
  • Paul LM; Department of Pathology, Microbiology and Immunology, University of California, Davis, CA, 95616, USA.
  • Brackney DE; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965, USA.
  • Grewal S; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965, USA.
  • Gurfield N; Department of Environmental Sciences, The Connecticut Agricultural Experiment Station, New Haven, CT, 06504, USA.
  • Van Rompay KKA; Department of Environmental Health, San Diego County Vector Control Program, San Diego, CA, 92123, USA.
  • Isern S; Department of Environmental Health, San Diego County Vector Control Program, San Diego, CA, 92123, USA.
  • Michael SF; California National Primate Research Center and Department of Pathology, Microbiology and Immunology, University of California, Davis, CA, 95616, USA.
  • Coffey LL; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965, USA.
  • Loman NJ; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965, USA.
  • Andersen KG; Department of Pathology, Microbiology and Immunology, University of California, Davis, CA, 95616, USA.
Genome Biol ; 20(1): 8, 2019 01 08.
Article in En | MEDLINE | ID: mdl-30621750
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: West Nile virus / Genomics / Zika Virus Type of study: Evaluation_studies Language: En Journal: Genome Biol Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2019 Type: Article Affiliation country: United States
Fulltext
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PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: West Nile virus / Genomics / Zika Virus Type of study: Evaluation_studies Language: En Journal: Genome Biol Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2019 Type: Article Affiliation country: United States