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Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.
Zhang, Bo; Wang, Kai Biao; Wang, Wen; Wang, Xin; Liu, Fang; Zhu, Jiapeng; Shi, Jing; Li, Ling Yu; Han, Hao; Xu, Kuang; Qiao, Hong Yun; Zhang, Xiao; Jiao, Rui Hua; Houk, Kendall N; Liang, Yong; Tan, Ren Xiang; Ge, Hui Ming.
Affiliation
  • Zhang B; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Wang KB; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Wang W; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Wang X; State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China.
  • Liu F; State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China.
  • Zhu J; State Key Laboratory Cultivation Base for TCM Quality and Efficacy, School of Life Sciences and Medicine, Nanjing University of Chinese Medicine, Nanjing, China.
  • Shi J; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Li LY; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Han H; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Xu K; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Qiao HY; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Zhang X; State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China.
  • Jiao RH; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China.
  • Houk KN; Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA. houk@chem.ucla.edu.
  • Liang Y; State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China. yongliang@nju.edu.cn.
  • Tan RX; State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, School of Life Sciences, Nanjing University, Nanjing, China. rxtan@nju.edu.cn.
  • Ge HM; State Key Laboratory Cultivation Base for TCM Quality and Efficacy, School of Life Sciences and Medicine, Nanjing University of Chinese Medicine, Nanjing, China. rxtan@nju.edu.cn.
Nature ; 568(7750): 122-126, 2019 04.
Article in En | MEDLINE | ID: mdl-30867595
ABSTRACT
Pericyclic reactions are powerful transformations for the construction of carbon-carbon and carbon-heteroatom bonds in organic synthesis. Their role in biosynthesis is increasingly apparent, and mechanisms by which pericyclases can catalyse reactions are of major interest1. [4+2] cycloadditions (Diels-Alder reactions) have been widely used in organic synthesis2 for the formation of six-membered rings and are now well-established in biosynthesis3-6. [6+4] and other 'higher-order' cycloadditions were predicted7 in 1965, and are now increasingly common in the laboratory despite challenges arising from the generation of a highly strained ten-membered ring system8,9. However, although enzyme-catalysed [6+4] cycloadditions have been proposed10-12, they have not been proven to occur. Here we demonstrate a group of enzymes that catalyse a pericyclic [6+4] cycloaddition, which is a crucial step in the biosynthesis of streptoseomycin-type natural products. This type of pericyclase catalyses [6+4] and [4+2] cycloadditions through a single ambimodal transition state, which is consistent with previous proposals11,12. The [6+4] product is transformed to a less stable [4+2] adduct via a facile Cope rearrangement, and the [4+2] adduct is converted into the natural product enzymatically. Crystal structures of three pericyclases, computational simulations of potential energies and molecular dynamics, and site-directed mutagenesis establish the mechanism of this transformation. This work shows how enzymes are able to catalyse concerted pericyclic reactions involving ambimodal transition states.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Biological Products / Enzymes / Biocatalysis / Cycloaddition Reaction / Lactones Language: En Journal: Nature Year: 2019 Type: Article Affiliation country: China

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Biological Products / Enzymes / Biocatalysis / Cycloaddition Reaction / Lactones Language: En Journal: Nature Year: 2019 Type: Article Affiliation country: China