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Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Knyazev, Sergey; Tsyvina, Viachaslau; Shankar, Anupama; Melnyk, Andrew; Artyomenko, Alexander; Malygina, Tatiana; Porozov, Yuri B; Campbell, Ellsworth M; Switzer, William M; Skums, Pavel; Mangul, Serghei; Zelikovsky, Alex.
Affiliation
  • Knyazev S; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.
  • Tsyvina V; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
  • Shankar A; Oak Ridge Institute for Science and Education, Oak Ridge, TN 37830, USA.
  • Melnyk A; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.
  • Artyomenko A; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
  • Malygina T; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.
  • Porozov YB; Guardant Health Inc., Redwood City, CA 94063, USA.
  • Campbell EM; International Scientific and Research Institute of Bioengineering, ITMO University, St. Petersburg 197101, Russia.
  • Switzer WM; World-Class Research Center "Digital biodesign and personalized healthcare", I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia.
  • Skums P; Department of Computational Biology, Sirius University of Science and Technology, Sochi 354340, Russia.
  • Mangul S; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
  • Zelikovsky A; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
Nucleic Acids Res ; 49(17): e102, 2021 09 27.
Article in En | MEDLINE | ID: mdl-34214168
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: RNA Virus Infections / RNA Viruses / Algorithms / Haplotypes / Computational Biology / High-Throughput Nucleotide Sequencing Type of study: Diagnostic_studies / Prognostic_studies / Screening_studies Limits: Humans Language: En Journal: Nucleic Acids Res Year: 2021 Type: Article Affiliation country: United States
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: RNA Virus Infections / RNA Viruses / Algorithms / Haplotypes / Computational Biology / High-Throughput Nucleotide Sequencing Type of study: Diagnostic_studies / Prognostic_studies / Screening_studies Limits: Humans Language: En Journal: Nucleic Acids Res Year: 2021 Type: Article Affiliation country: United States