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ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion.
Adebimpe, Azeez; Bertolero, Maxwell; Dolui, Sudipto; Cieslak, Matthew; Murtha, Kristin; Baller, Erica B; Boeve, Bradley; Boxer, Adam; Butler, Ellyn R; Cook, Phil; Colcombe, Stan; Covitz, Sydney; Davatzikos, Christos; Davila, Diego G; Elliott, Mark A; Flounders, Matthew W; Franco, Alexandre R; Gur, Raquel E; Gur, Ruben C; Jaber, Basma; McMillian, Corey; Milham, Michael; Mutsaerts, Henk J M M; Oathes, Desmond J; Olm, Christopher A; Phillips, Jeffrey S; Tackett, Will; Roalf, David R; Rosen, Howard; Tapera, Tinashe M; Tisdall, M Dylan; Zhou, Dale; Esteban, Oscar; Poldrack, Russell A; Detre, John A; Satterthwaite, Theodore D.
Affiliation
  • Adebimpe A; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Bertolero M; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Dolui S; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Cieslak M; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Murtha K; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Baller EB; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Boeve B; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Boxer A; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Butler ER; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Cook P; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Colcombe S; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Covitz S; Lifespan Brain Institute, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
  • Davatzikos C; Department of Neurology, Mayo Clinic, Rochester, MN, USA.
  • Davila DG; Department of Neurology, University of California, San Francisco, CA, USA.
  • Elliott MA; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Flounders MW; Penn Image Computing and Science Laboratory, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Franco AR; Child Mind Institute, New York, NY, USA.
  • Gur RE; Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.
  • Gur RC; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Jaber B; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • McMillian C; Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Milham M; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Mutsaerts HJMM; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Oathes DJ; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Olm CA; Center for Neuromodulation in Depression and Stress, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Phillips JS; Child Mind Institute, New York, NY, USA.
  • Tackett W; Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.
  • Roalf DR; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Rosen H; Lifespan Brain Institute, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
  • Tapera TM; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Tisdall MD; Lifespan Brain Institute, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
  • Zhou D; Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Esteban O; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Poldrack RA; Frontotemporal Degeneration Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Satterthwaite TD; Child Mind Institute, New York, NY, USA.
Nat Methods ; 19(6): 683-686, 2022 06.
Article in En | MEDLINE | ID: mdl-35689029
ABSTRACT
Arterial spin labeled (ASL) magnetic resonance imaging (MRI) is the primary method for noninvasively measuring regional brain perfusion in humans. We introduce ASLPrep, a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Brain / Magnetic Resonance Imaging Limits: Humans Language: En Journal: Nat Methods Journal subject: TECNICAS E PROCEDIMENTOS DE LABORATORIO Year: 2022 Type: Article Affiliation country: United States
Fulltext
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PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Brain / Magnetic Resonance Imaging Limits: Humans Language: En Journal: Nat Methods Journal subject: TECNICAS E PROCEDIMENTOS DE LABORATORIO Year: 2022 Type: Article Affiliation country: United States