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Radiomics-based survival risk stratification of glioblastoma is associated with different genome alteration.
Xu, Peng-Fei; Li, Cong; Chen, Yin-Sheng; Li, De-Pei; Xi, Shao-Yan; Chen, Fu-Rong; Li, Xin; Chen, Zhong-Ping.
Affiliation
  • Xu PF; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China; Shenzhen Peking University-The Hong Kong University of Science and Technology (PKU-HKUST) Medical Center, Peking University Shenzhen Hospital, 518035, Shenzhen, PR China.
  • Li C; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China; The Second Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, Guandong, 510120, PR China; Guangdong Province Hospital of Chinese Medical, Guangzhou, Guandong, 510120, PR China.
  • Chen YS; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China.
  • Li DP; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China.
  • Xi SY; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China.
  • Chen FR; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China.
  • Li X; Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong 518107, PR China. Electronic address: lixin253@mail.sysu.edu.cn.
  • Chen ZP; Sun Yat-sen University Cancer Center, Guandong, 510060, PR China. Electronic address: chenzhp@sysucc.org.cn.
Comput Biol Med ; 159: 106878, 2023 06.
Article in En | MEDLINE | ID: mdl-37060774
ABSTRACT

BACKGROUND:

Glioblastoma (GBM) is a remarkable heterogeneous tumor with few non-invasive, repeatable, and cost-effective prognostic biomarkers reported. In this study, we aim to explore the association between radiomic features and prognosis and genomic alterations in GBM.

METHODS:

A total of 180 GBM patients (training cohort n = 119; validation cohort 1 n = 37; validation cohort 2 n = 24) were enrolled and underwent preoperative MRI scans. From the multiparametric (T1, T1-Gd, T2, and T2-FLAIR) MR images, the radscore was developed to predict overall survival (OS) in a multistep postprocessing workflow and validated in two external validation cohorts. The prognostic accuracy of the radscore was assessed with concordance index (C-index) and Brier scores. Furthermore, we used hierarchical clustering and enrichment analysis to explore the association between image features and genomic alterations.

RESULTS:

The MRI-based radscore was significantly correlated with OS in the training cohort (C-index 0.70), validation cohort 1 (C-index 0.66), and validation cohort 2 (C-index 0.74). Multivariate analysis revealed that the radscore was an independent prognostic factor. Cluster analysis and enrichment analysis revealed that two distinct phenotypic clusters involved in distinct biological processes and pathways, including the VEGFA-VEGFR2 signaling pathway (q-value = 0.033), JAK-STAT signaling pathway (q-value = 0.049), and regulation of MAPK cascade (q-value = 0.0015/0.025).

CONCLUSIONS:

Radiomic features and radiomics-derived radscores provided important phenotypic and prognostic information with great potential for risk stratification in GBM.
Subject(s)
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Glioblastoma Type of study: Etiology_studies / Observational_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Journal: Comput Biol Med Year: 2023 Type: Article

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Glioblastoma Type of study: Etiology_studies / Observational_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Journal: Comput Biol Med Year: 2023 Type: Article