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Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA.
Ovaskainen, Otso; Abrego, Nerea; Furneaux, Brendan; Hardwick, Bess; Somervuo, Panu; Palorinne, Isabella; Andrew, Nigel R; Babiy, Ulyana V; Bao, Tan; Bazzano, Gisela; Bondarchuk, Svetlana N; Bonebrake, Timothy C; Brennan, Georgina L; Bret-Harte, Syndonia; Bässler, Claus; Cagnolo, Luciano; Cameron, Erin K; Chapurlat, Elodie; Creer, Simon; D'Acqui, Luigi P; de Vere, Natasha; Desprez-Loustau, Marie-Laure; Dongmo, Michel A K; Dyrholm Jacobsen, Ida B; Fisher, Brian L; Flores de Jesus, Miguel; Gilbert, Gregory S; Griffith, Gareth W; Gritsuk, Anna A; Gross, Andrin; Grudd, Håkan; Halme, Panu; Hanna, Rachid; Hansen, Jannik; Hansen, Lars Holst; Hegbe, Apollon D M T; Hill, Sarah; Hogg, Ian D; Hultman, Jenni; Hyde, Kevin D; Hynson, Nicole A; Ivanova, Natalia; Karisto, Petteri; Kerdraon, Deirdre; Knorre, Anastasia; Krisai-Greilhuber, Irmgard; Kurhinen, Juri; Kuzmina, Masha; Lecomte, Nicolas; Lecomte, Erin.
Affiliation
  • Ovaskainen O; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland. otso.t.ovaskainen@jyu.fi.
  • Abrego N; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland. otso.t.ovaskainen@jyu.fi.
  • Furneaux B; Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Trondheim, N-7491, Norway. otso.t.ovaskainen@jyu.fi.
  • Hardwick B; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.
  • Somervuo P; Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland.
  • Palorinne I; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.
  • Andrew NR; Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland.
  • Babiy UV; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland.
  • Bao T; Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland.
  • Bazzano G; Natural History Museum, Zoology, University of New England, Armidale, NSW, 2351, Australia.
  • Bondarchuk SN; Faculty of Science and Engineering, Southern Cross University, Northern Rivers, NSW, 2480, Australia.
  • Bonebrake TC; Wrangel Island State Nature Reserve, Pevek, Russia.
  • Brennan GL; Department of Biological Sciences, MacEwan University, 10, 700 - 104 Avenue, Edmonton, AB, T5J 2P2, Canada.
  • Bret-Harte S; Universidad Nacional de Còrdoba, Facultad de Ciencias Exactas Físicas y Naturales, Centro de Zoología Aplicada, Córdoba, Argentina.
  • Bässler C; Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia.
  • Cagnolo L; School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.
  • Cameron EK; CSIC, Institute of Marine Sciences, Passeig Marítim de la Barceloneta, 37-49ES08003, Barcelona, Spain.
  • Chapurlat E; Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA.
  • Creer S; Goethe-University Frankfurt, Faculty of Biological Sciences, Institute for Ecology, Evolution and Diversity, Conservation Biology, D- 60438, Frankfurt am Main, Germany.
  • D'Acqui LP; Bavarian Forest National Park, Freyunger Str. 2, D-94481, Grafenau, Germany.
  • de Vere N; Ecology of Fungi, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Universitätsstraße 30, 95440, Bayreuth, Germany.
  • Desprez-Loustau ML; Consejo de Investigaciones Científicas y Técnicas (CONICET), Instituto Multidisciplinario de Biología Vegetal, Córdoba, Argentina.
  • Dongmo MAK; Department of Environmental Science, Saint Mary's University, 923 Robie St., Halifax, NS, B3H 3C3, Canada.
  • Dyrholm Jacobsen IB; Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.
  • Fisher BL; Molecular Ecology and Evolution at Bangor (MEEB), School of Environmental and Natural Sciences, Bangor University, Environment Centre Wales, Deiniol Road, Bangor, Gwynedd, Wales, LL57 2UW, UK.
  • Flores de Jesus M; Research Institute on Terrestrial Ecosystems - IRET, National Research Council - CNR, Via Madonna del Piano n° 10, 50019, Sesto Fiorentino, Firenze, Italy.
  • Gilbert GS; National Biodiversity Future Center, Palermo, Italy.
  • Griffith GW; Natural History Museum of Denmark, University of Copenhagen, Gothersgade 130, 1123, København K, Denmark.
  • Gritsuk AA; INRAE, BIOGECO, F-33610, Cestas, France.
  • Gross A; University of Bordeaux, BIOGECO, F-33615, Bordeaux, France.
  • Grudd H; School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.
  • Halme P; International Institute of Tropical Agriculture (IITA), P.O. Box 2008 (Messa), Yaoundé, Cameroon.
  • Hanna R; Greenland Institute of Natural Resources, Kivioq 2, P.O. Box 570, 3900, Nuuk, Greenland.
  • Hansen J; Entomology, 55 Music Concourse Drive, California Academy of Sciences, San Francisco, CA, 94118, USA.
  • Hansen LH; Madagascar Biodiversity Center, Parc Botanique et Zoologique de Tsimbazaza, Antananarivo, 101, Madagascar.
  • Hegbe ADMT; Legado das Águas, Reserva Votorantin, TPR 188 Km 22, Tapiraí, SP, 18180-000, Brazil.
  • Hill S; Environmental Studies Department, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA, 95065, USA.
  • Hogg ID; Department of Life Sciences, Aberystwyth University, Aberystwyth, Ceredigion, WALES SY23 3DD, UK.
  • Hultman J; Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia.
  • Hyde KD; Research Unit Biodiversity and Conservation Biology, SwissFungi, Swiss Federal Research Institute WSL, Zürcherstrasse 111, CH-8903, Birmensdorf, Switzerland.
  • Hynson NA; Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden.
  • Ivanova N; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.
  • Karisto P; Center for Tropical Research, Congo Basin Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095, USA.
  • Kerdraon D; Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark.
  • Knorre A; Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark.
  • Krisai-Greilhuber I; Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123, Parakou, Republic of Benin.
  • Kurhinen J; Natural History Museum, Zoology, University of New England, Armidale, NSW, 2351, Australia.
  • Kuzmina M; Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada.
  • Lecomte N; Department of Integrative Biology, College of Biological Science, University of Guelph, 50 Stone Road East, Guelph, Ontario, N1G 2W1, Canada.
  • Lecomte E; School of Science, University of Waikato, Private Bag 3105, Hamilton, 3240, New Zealand.
Sci Data ; 11(1): 561, 2024 May 30.
Article in En | MEDLINE | ID: mdl-38816458
ABSTRACT
Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Spores, Fungal / DNA, Fungal / Air Microbiology Language: En Journal: Sci Data Year: 2024 Type: Article Affiliation country: Finland
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Spores, Fungal / DNA, Fungal / Air Microbiology Language: En Journal: Sci Data Year: 2024 Type: Article Affiliation country: Finland