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Active sparse Bayesian committee machine potential for isothermal-isobaric molecular dynamics simulations.
Willow, Soohaeng Yoo; Kim, Dong Geon; Sundheep, R; Hajibabaei, Amir; Kim, Kwang S; Myung, Chang Woo.
Affiliation
  • Willow SY; Department of Energy Science, Sungkyunkwan University, Seobu-ro 2066, Suwon 16419, Korea. cwmyung@skku.edu.
  • Kim DG; Department of Energy Science, Sungkyunkwan University, Seobu-ro 2066, Suwon 16419, Korea. cwmyung@skku.edu.
  • Sundheep R; Department of Energy Science, Sungkyunkwan University, Seobu-ro 2066, Suwon 16419, Korea. cwmyung@skku.edu.
  • Hajibabaei A; Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.
  • Kim KS; Center for Superfunctional Materials, Department of Chemistry, Ulsan National Institute of Science and Technology, Ulsan 44919, Korea.
  • Myung CW; Department of Energy Science, Sungkyunkwan University, Seobu-ro 2066, Suwon 16419, Korea. cwmyung@skku.edu.
Phys Chem Chem Phys ; 26(33): 22073-22082, 2024 Aug 22.
Article in En | MEDLINE | ID: mdl-39113586
ABSTRACT
Recent advancements in machine learning potentials (MLPs) have significantly impacted the fields of chemistry, physics, and biology by enabling large-scale first-principles simulations. Among different machine learning approaches, kernel-based MLPs distinguish themselves through their ability to handle small datasets, quantify uncertainties, and minimize over-fitting. Nevertheless, their extensive computational requirements present considerable challenges. To alleviate these, sparsification methods have been developed, aiming to reduce computational scaling without compromising accuracy. In the context of isothermal and isobaric ML molecular dynamics (MD) simulations, achieving precise pressure estimation is crucial for reproducing reliable system behavior under constant pressure. Despite progress, sparse kernel MLPs struggle with precise pressure prediction. Here, we introduce a virial kernel function that significantly enhances the pressure estimation accuracy of MLPs. Additionally, we propose the active sparse Bayesian committee machine (BCM) potential, an on-the-fly MLP architecture that aggregates local sparse Gaussian process regression (SGPR) MLPs. The sparse BCM potential overcomes the steep computational scaling with the kernel size, and a predefined restriction on the size of kernel allows for fast and efficient on-the-fly training. Our advancements facilitate accurate and computationally efficient machine learning-enhanced MD (MLMD) simulations across diverse systems, including ice-liquid coexisting phases, Li10Ge(PS6)2 lithium solid electrolyte, and high-pressure liquid boron nitride.

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Phys Chem Chem Phys Journal subject: BIOFISICA / QUIMICA Year: 2024 Type: Article

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Phys Chem Chem Phys Journal subject: BIOFISICA / QUIMICA Year: 2024 Type: Article