Correcting palindromes in long reads after whole-genome amplification.

Warris, Sven; Schijlen, Elio; van de Geest, Henri; Vegesna, Rahulsimham; Hesselink, Thamara; Te Lintel Hekkert, Bas; Sanchez Perez, Gabino; Medvedev, Paul; Makova, Kateryna D; de Ridder, Dick

Warris, Sven; Schijlen, Elio; van de Geest, Henri; Vegesna, Rahulsimham; Hesselink, Thamara; Te Lintel Hekkert, Bas; Sanchez Perez, Gabino; Medvedev, Paul; Makova, Kateryna D; de Ridder, Dick.

Afiliação

Warris S; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands. sven.warris@wur.nl.
Schijlen E; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands.
van de Geest H; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands.
Vegesna R; Present address Genetwister Technologies BV, Wageningen, The Netherlands.
Hesselink T; Bioinformatics and Genomics Graduate Program, Pennsylvania State University, University Park, State College, PA, 16802, USA.
Te Lintel Hekkert B; Computation, Bioinformatics, Statistics Graduate Training Program, Pennsylvania State University, University Park, State College, PA, 16802, USA.
Sanchez Perez G; The Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, State College, PA, 16802, USA.
Medvedev P; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands.
Makova KD; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands.
de Ridder D; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands.

BMC Genomics ; 19(1): 798, 2018 Nov 06.

Article em En | MEDLINE | ID: mdl-30400848

Assuntos

Arabidopsis/genética; DNA/análise; Gorilla gorilla/genética; Nucleotídeos/genética; Análise de Sequência de DNA/métodos; Sequenciamento Completo do Genoma/métodos; Cromossomo Y/genética; Algoritmos; Animais; DNA/genética; Projetos de Pesquisa

Palavras-chave

Chimeric reads; High molecular weight DNA; Long read sequencing; Palindromes; Read mapping; Whole-genome amplification; de novo assembly

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Cromossomo Y / DNA / Análise de Sequência de DNA / Arabidopsis / Sequenciamento Completo do Genoma / Gorilla gorilla / Nucleotídeos Limite: Animals Idioma: En Revista: BMC Genomics Assunto da revista: GENETICA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Holanda

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