Your browser doesn't support javascript.
loading
Machine learning active-nematic hydrodynamics.
Colen, Jonathan; Han, Ming; Zhang, Rui; Redford, Steven A; Lemma, Linnea M; Morgan, Link; Ruijgrok, Paul V; Adkins, Raymond; Bryant, Zev; Dogic, Zvonimir; Gardel, Margaret L; de Pablo, Juan J; Vitelli, Vincenzo.
Afiliação
  • Colen J; Department of Physics, University of Chicago, Chicago, IL 60637.
  • Han M; James Franck Institute, University of Chicago, Chicago, IL 60637.
  • Zhang R; James Franck Institute, University of Chicago, Chicago, IL 60637.
  • Redford SA; Pritzer School of Molecular Engineering, University of Chicago, Chicago, IL 60637.
  • Lemma LM; Pritzer School of Molecular Engineering, University of Chicago, Chicago, IL 60637.
  • Morgan L; Department of Physics, Hong Kong University of Science and Technology, Kowloon, Hong Kong SAR, People's Republic of China.
  • Ruijgrok PV; James Franck Institute, University of Chicago, Chicago, IL 60637.
  • Adkins R; Graduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637.
  • Bryant Z; Department of Physics, Brandeis University, Waltham, MA 02454.
  • Dogic Z; Department of Physics, University of California, Santa Barbara, CA 92111.
  • Gardel ML; Department of Physics, University of California, Santa Barbara, CA 92111.
  • de Pablo JJ; Department of Bioengineering, Stanford University, Stanford, CA 94305.
  • Vitelli V; Department of Physics, University of California, Santa Barbara, CA 92111.
Proc Natl Acad Sci U S A ; 118(10)2021 03 09.
Article em En | MEDLINE | ID: mdl-33653956
ABSTRACT
Hydrodynamic theories effectively describe many-body systems out of equilibrium in terms of a few macroscopic parameters. However, such parameters are difficult to determine from microscopic information. Seldom is this challenge more apparent than in active matter, where the hydrodynamic parameters are in fact fields that encode the distribution of energy-injecting microscopic components. Here, we use active nematics to demonstrate that neural networks can map out the spatiotemporal variation of multiple hydrodynamic parameters and forecast the chaotic dynamics of these systems. We analyze biofilament/molecular-motor experiments with microtubule/kinesin and actin/myosin complexes as computer vision problems. Our algorithms can determine how activity and elastic moduli change as a function of space and time, as well as adenosine triphosphate (ATP) or motor concentration. The only input needed is the orientation of the biofilaments and not the coupled velocity field which is harder to access in experiments. We can also forecast the evolution of these chaotic many-body systems solely from image sequences of their past using a combination of autoencoders and recurrent neural networks with residual architecture. In realistic experimental setups for which the initial conditions are not perfectly known, our physics-inspired machine-learning algorithms can surpass deterministic simulations. Our study paves the way for artificial-intelligence characterization and control of coupled chaotic fields in diverse physical and biological systems, even in the absence of knowledge of the underlying dynamics.
Assuntos
Palavras-chave

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Hidrodinâmica / Aprendizado de Máquina Idioma: En Revista: Proc Natl Acad Sci U S A Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Hidrodinâmica / Aprendizado de Máquina Idioma: En Revista: Proc Natl Acad Sci U S A Ano de publicação: 2021 Tipo de documento: Article