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1.
Nucleic Acids Res ; 52(8): 4344-4360, 2024 May 08.
Article En | MEDLINE | ID: mdl-38381902

The first step toward eukaryotic genome duplication is loading of the replicative helicase onto chromatin. This 'licensing' step initiates with the recruitment of the origin recognition complex (ORC) to chromatin, which is thought to occur via ORC's ATP-dependent DNA binding and encirclement activity. However, we have previously shown that ATP binding is dispensable for the chromatin recruitment of fly ORC, raising the question of how metazoan ORC binds chromosomes. We show here that the intrinsically disordered region (IDR) of fly Orc1 is both necessary and sufficient for recruitment of ORC to chromosomes in vivo and demonstrate that this is regulated by IDR phosphorylation. Consistently, we find that the IDR confers the ORC holocomplex with ATP-independent DNA binding activity in vitro. Using phylogenetic analysis, we make the surprising observation that metazoan Orc1 IDRs have diverged so markedly that they are unrecognizable as orthologs and yet we find that these compositionally homologous sequences are functionally conserved. Altogether, these data suggest that chromatin is recalcitrant to ORC's ATP-dependent DNA binding activity, necessitating IDR-dependent chromatin tethering, which we propose poises ORC to opportunistically encircle nucleosome-free regions as they become available.


Chromatin , Intrinsically Disordered Proteins , Origin Recognition Complex , Animals , Humans , Adenosine Triphosphate/metabolism , Chromatin/metabolism , Chromatin/genetics , DNA/metabolism , DNA/chemistry , DNA/genetics , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Drosophila Proteins/metabolism , Drosophila Proteins/genetics , Drosophila Proteins/chemistry , Intrinsically Disordered Proteins/metabolism , Intrinsically Disordered Proteins/genetics , Intrinsically Disordered Proteins/chemistry , Origin Recognition Complex/metabolism , Origin Recognition Complex/genetics , Phosphorylation , Phylogeny , Protein Binding , Evolution, Molecular
2.
Plant Physiol ; 185(4): 1617-1637, 2021 04 23.
Article En | MEDLINE | ID: mdl-33694362

Mammalian phase II metabolism of dietary plant flavonoid compounds generally involves substitution with glucuronic acid. In contrast, flavonoids mainly exist as glucose conjugates in plants, and few plant UDP-glucuronosyltransferase enzymes have been identified to date. In the model legume Medicago truncatula, the major flavonoid compounds in the aerial parts of the plant are glucuronides of the flavones apigenin and luteolin. Here we show that the M. truncatula glycosyltransferase UGT84F9 is a bi-functional glucosyl/glucuronosyl transferase in vitro, with activity against a wide range of flavonoid acceptor molecules including flavones. However, analysis of metabolite profiles in leaves and roots of M. truncatula ugt84f9 loss of function mutants revealed that the enzyme is essential for formation of flavonoid glucuronides, but not most flavonoid glucosides, in planta. We discuss the use of plant UGATs for the semi-synthesis of flavonoid phase II metabolites for clinical studies.


Flavonoids/metabolism , Glucuronosyltransferase/genetics , Glucuronosyltransferase/metabolism , Medicago truncatula/genetics , Medicago truncatula/metabolism , Plant Leaves/metabolism , Plant Roots/metabolism , Flavonoids/genetics , Gene Expression Regulation, Plant , Genes, Plant , Plant Leaves/genetics , Plant Roots/genetics
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